Wall clock time and date at job start Mon Mar 30 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00302 * 66.03980 * 13 12 10 15 15 C 1.53040 * 109.52612 * 185.83953 * 14 13 12 16 16 C 1.53121 * 109.27852 * 300.82379 * 15 14 13 17 17 C 1.53122 * 109.15829 * 57.65537 * 16 15 14 18 18 H 1.08994 * 109.50471 * 62.32443 * 17 16 15 19 19 N 1.46905 * 109.50084 * 182.40314 * 17 16 15 20 20 C 1.46850 * 111.00092 * 190.25451 * 13 12 10 21 21 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 23 23 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 24 24 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 25 25 H 1.09000 * 109.46560 * 305.86063 * 14 13 12 26 26 H 1.09005 * 109.45982 * 65.82575 * 14 13 12 27 27 H 1.09004 * 109.50209 * 60.76140 * 15 14 13 28 28 H 1.08996 * 109.50263 * 180.84485 * 15 14 13 29 29 H 1.09005 * 109.52136 * 177.55753 * 16 15 14 30 30 H 1.08999 * 109.52316 * 297.74847 * 16 15 14 31 31 H 1.00891 * 111.00020 * 299.99971 * 19 17 16 32 32 H 1.00904 * 110.99885 * 63.95624 * 19 17 16 33 33 H 1.08998 * 109.45898 * 294.17075 * 20 13 12 34 34 H 1.09001 * 109.46248 * 54.14334 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9634 -6.0118 1.2713 15 6 4.0435 -7.0923 1.1834 16 6 3.3813 -8.4500 0.9328 17 6 2.5518 -8.3750 -0.3521 18 1 3.2078 -8.1653 -1.1970 19 7 1.8668 -9.6563 -0.5691 20 6 1.5148 -7.2573 -0.2196 21 1 -0.4850 0.8400 -0.0004 22 1 0.3533 -2.3906 0.0005 23 1 0.6167 -4.9162 0.9030 24 1 0.6174 -4.9252 -0.8769 25 1 3.4325 -5.0417 1.4355 26 1 2.2925 -6.2355 2.1008 27 1 4.7229 -6.8618 0.3627 28 1 4.6015 -7.1261 2.1191 29 1 4.1495 -9.2159 0.8263 30 1 2.7315 -8.6987 1.7719 31 1 2.5307 -10.4109 -0.6566 32 1 1.2039 -9.8414 0.1687 33 1 0.8508 -7.4752 0.6169 34 1 0.9320 -7.1918 -1.1384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041028836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:36 Heat of formation + Delta-G solvation = -63.006919 kcal Electronic energy + Delta-G solvation = -15990.221126 eV Core-core repulsion = 13342.379391 eV Total energy + Delta-G solvation = -2647.841735 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72312 -39.34415 -36.14051 -35.40139 -33.43645 -33.06667 -29.54565 -28.57879 -26.49829 -23.99167 -23.29355 -21.00501 -20.80644 -19.85974 -17.83886 -17.04727 -16.71423 -16.49943 -16.26195 -15.71816 -15.45530 -15.11064 -14.67929 -14.56042 -14.14547 -13.86401 -13.47907 -13.30897 -12.95372 -12.67472 -12.42951 -12.20850 -12.12544 -11.94289 -11.76235 -11.50955 -11.37374 -10.25328 -9.99548 -9.57909 -9.19641 -8.45731 -5.94583 1.40136 1.41819 1.52902 2.05594 2.28540 2.69385 3.20766 3.37595 3.70603 3.82795 3.92741 4.10296 4.25270 4.33576 4.35741 4.46769 4.52971 4.66078 4.67088 4.76045 4.94637 5.03406 5.11388 5.22879 5.39670 5.41759 5.89945 6.09420 6.17751 6.30697 6.61317 6.65373 7.13452 7.56833 8.12776 8.71610 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.063232 B = 0.005396 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.709329 B = 5187.338376 C = 5472.714090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.613 6.613 12 C 0.059 3.941 13 N -0.533 5.533 14 C 0.052 3.948 15 C -0.106 4.106 16 C -0.143 4.143 17 C 0.100 3.900 18 H 0.073 0.927 19 N -0.843 5.843 20 C 0.065 3.935 21 H 0.278 0.722 22 H 0.396 0.604 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.353 0.647 32 H 0.346 0.654 33 H 0.039 0.961 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 -15.666 2.524 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.499 6.499 12 C -0.073 4.073 13 N -0.258 5.258 14 C -0.076 4.076 15 C -0.145 4.145 16 C -0.182 4.182 17 C -0.012 4.012 18 H 0.091 0.909 19 N -0.374 5.374 20 C -0.062 4.062 21 H 0.087 0.913 22 H 0.229 0.771 23 H 0.083 0.917 24 H 0.126 0.874 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.057 0.943 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.315 -15.123 1.453 15.250 hybrid contribution -0.271 0.751 1.519 1.716 sum 1.044 -14.373 2.971 14.714 Atomic orbital electron populations 1.69671 1.06860 1.29348 1.50371 1.26036 0.96530 1.02388 0.96265 0.84986 0.77752 0.76636 0.78937 1.19755 1.19453 1.19678 1.19630 0.92691 0.83988 1.49986 0.90310 1.41934 1.09291 1.04691 1.65281 1.20732 0.88312 0.85872 0.82207 1.90458 1.15629 1.87732 1.56087 1.21702 0.93620 0.88689 1.03254 1.61362 1.25753 1.02357 1.36368 1.22176 0.95964 1.00446 0.88967 1.21443 0.97114 0.93930 1.02005 1.22391 1.00121 0.97075 0.98645 1.21267 0.93944 0.89313 0.96672 0.90906 1.58771 1.21754 1.03769 1.53095 1.22075 0.95326 0.87710 1.01129 0.91302 0.77061 0.91688 0.87384 0.92145 0.95160 0.92601 0.90512 0.90256 0.91453 0.83252 0.84072 0.94253 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.33 13.05 21.66 0.28 -50.04 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.37 29.55 68.60 2.03 45.39 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -30.15 5.29 -306.98 -1.62 -31.77 16 10 C 0.44 21.63 7.46 87.66 0.65 22.28 16 11 O -0.61 -34.49 13.92 -3.07 -0.04 -34.53 16 12 C 0.06 2.14 5.45 85.56 0.47 2.60 16 13 N -0.53 -18.12 4.39 -900.91 -3.96 -22.07 16 14 C 0.05 1.74 5.11 86.33 0.44 2.18 16 15 C -0.11 -2.82 6.09 30.65 0.19 -2.63 16 16 C -0.14 -2.84 5.57 30.68 0.17 -2.67 16 17 C 0.10 2.20 3.41 44.97 0.15 2.35 16 18 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 19 N -0.84 -14.13 9.26 -168.45 -1.56 -15.68 16 20 C 0.07 1.70 5.00 86.33 0.43 2.13 16 21 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 22 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 23 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 24 H 0.11 3.52 7.98 -2.39 -0.02 3.51 16 25 H 0.06 2.55 5.80 -2.39 -0.01 2.54 16 26 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.35 4.60 9.04 -89.70 -0.81 3.79 16 32 H 0.35 4.82 8.98 -89.69 -0.81 4.02 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 2.07 8.01 -2.39 -0.02 2.05 16 Total: -1.00 -66.37 278.35 -2.31 -68.68 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -1.23 Total: 32.40 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 3.78 Total: 7.63 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -6.86 Total: -119.57 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.04 Total: -34.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.37 -2.31 -68.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041028836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.675 kcal (2) G-P(sol) polarization free energy of solvation -66.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds