Wall clock time and date at job start Mon Mar 30 2020 03:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48508 * 109.46889 * 240.00036 * 3 2 1 5 5 H 1.48494 * 109.47270 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46934 * 120.00567 * 3 2 1 7 7 C 1.37871 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00271 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47272 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47223 * 179.97438 * 10 9 7 12 12 C 1.42895 * 113.99867 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46702 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46989 * 180.02562 * 13 12 11 15 15 H 1.09007 * 109.49622 * 304.91348 * 14 13 12 16 16 C 1.53203 * 109.49217 * 184.82188 * 14 13 12 17 17 C 1.53123 * 109.11533 * 182.41941 * 16 14 13 18 18 C 1.53039 * 109.31189 * 57.63615 * 17 16 14 19 19 N 1.46856 * 109.51787 * 300.79882 * 18 17 16 20 20 C 1.46846 * 111.19871 * 61.74404 * 19 18 17 21 21 H 0.97003 * 119.99568 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47118 * 59.99671 * 9 7 2 23 23 H 1.09004 * 109.46649 * 299.99603 * 9 7 2 24 24 H 1.09000 * 109.47255 * 59.99313 * 10 9 7 25 25 H 1.09004 * 109.46690 * 299.99248 * 10 9 7 26 26 H 1.08999 * 109.47322 * 59.99949 * 12 11 10 27 27 H 1.09003 * 109.47238 * 299.99307 * 12 11 10 28 28 H 1.08999 * 109.47431 * 59.99823 * 13 12 11 29 29 H 1.09002 * 109.47076 * 299.99537 * 13 12 11 30 30 H 1.08994 * 109.57907 * 62.50732 * 16 14 13 31 31 H 1.08997 * 109.51203 * 302.28996 * 16 14 13 32 32 H 1.09002 * 109.50371 * 297.67165 * 17 16 14 33 33 H 1.09003 * 109.50070 * 177.59325 * 17 16 14 34 34 H 1.09000 * 109.46148 * 60.81334 * 18 17 16 35 35 H 1.09001 * 109.46317 * 180.79820 * 18 17 16 36 36 H 1.00903 * 110.99558 * 185.83726 * 19 18 17 37 37 H 1.09004 * 109.46012 * 58.27074 * 20 19 18 38 38 H 1.08994 * 109.46057 * 178.23653 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 8 1.5308 -4.8997 -0.0020 12 6 2.3707 -6.0557 -0.0024 13 6 1.5034 -7.3161 -0.0035 14 6 2.4028 -8.5540 -0.0033 15 1 3.0930 -8.5023 -0.8454 16 6 1.5390 -9.8134 -0.1259 17 6 2.4419 -11.0486 -0.0640 18 6 3.2334 -11.0318 1.2458 19 7 4.0431 -9.8086 1.3141 20 6 3.1954 -8.6095 1.3045 21 1 -0.4849 0.8401 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 2.8713 -3.6047 0.8890 25 1 2.8725 -3.6040 -0.8910 26 1 2.9999 -6.0480 0.8876 27 1 3.0000 -6.0473 -0.8924 28 1 0.8745 -7.3236 -0.8937 29 1 0.8739 -7.3248 0.8863 30 1 1.0056 -9.7994 -1.0762 31 1 0.8223 -9.8446 0.6948 32 1 3.1328 -11.0369 -0.9069 33 1 1.8296 -11.9494 -0.1077 34 1 2.5421 -11.0574 2.0882 35 1 3.8875 -11.9028 1.2860 36 1 4.6459 -9.8188 2.1232 37 1 2.5044 -8.6465 2.1467 38 1 3.8217 -7.7214 1.3876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051917861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:12 Heat of formation + Delta-G solvation = -100.500346 kcal Electronic energy + Delta-G solvation = -15502.096166 eV Core-core repulsion = 12956.168938 eV Total energy + Delta-G solvation = -2545.927229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98796 -38.73849 -35.53067 -34.60245 -32.71393 -31.91578 -29.11654 -26.57069 -24.90328 -24.32654 -22.93016 -21.86055 -20.58567 -18.72239 -17.63384 -17.15206 -16.78587 -16.58648 -15.88215 -15.40167 -15.36364 -14.87811 -14.47630 -14.32652 -13.99032 -13.79936 -13.32560 -13.15958 -12.93541 -12.61648 -12.48483 -12.19373 -12.08375 -11.83183 -11.61360 -11.53509 -11.38941 -11.23914 -11.09327 -10.64367 -10.39482 -9.41126 -8.24248 -6.38003 1.40843 1.45291 1.53354 2.37437 2.85930 3.09349 3.28689 3.78059 3.86809 3.98442 4.13670 4.28147 4.34777 4.40502 4.44220 4.48611 4.51040 4.54743 4.67747 4.78648 4.88123 4.90774 4.96070 4.97016 5.10441 5.13418 5.22940 5.32988 5.36319 5.49711 5.56182 5.72027 6.06468 6.10790 6.44119 6.48803 6.77747 7.31963 8.88772 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.073724 B = 0.003646 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.705057 B = 7677.230792 C = 7914.130973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.027 3.973 10 C 0.085 3.915 11 O -0.418 6.418 12 C 0.054 3.946 13 C -0.105 4.105 14 C -0.075 4.075 15 H 0.075 0.925 16 C -0.116 4.116 17 C -0.116 4.116 18 C 0.054 3.946 19 N -0.698 5.698 20 C 0.059 3.941 21 H 0.266 0.734 22 H -0.007 1.007 23 H -0.006 1.006 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.086 0.914 36 H 0.351 0.649 37 H 0.029 0.971 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 -21.476 1.924 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.587 4.587 8 H 0.086 0.914 9 C -0.010 4.010 10 C 0.009 3.991 11 O -0.338 6.338 12 C -0.022 4.022 13 C -0.144 4.144 14 C -0.094 4.094 15 H 0.093 0.907 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.075 4.075 19 N -0.330 5.330 20 C -0.070 4.070 21 H 0.075 0.925 22 H 0.012 0.988 23 H 0.012 0.988 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.169 0.831 37 H 0.047 0.953 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.007 -21.376 1.256 22.531 hybrid contribution -0.125 1.027 0.906 1.375 sum 6.882 -20.349 2.162 21.590 Atomic orbital electron populations 1.70126 1.08088 1.28206 1.50809 1.26075 0.95844 1.03753 0.94203 0.85337 0.78121 0.77159 0.79429 1.18833 1.20693 1.18820 1.21462 0.93777 0.91465 1.51948 0.91363 1.18946 0.94659 0.91976 0.95447 1.22472 0.94763 0.82763 0.99128 1.87859 1.35776 1.14677 1.95490 1.22713 0.93604 0.85431 1.00453 1.21502 0.98138 0.91796 1.02919 1.21061 0.96469 0.93468 0.98359 0.90656 1.21641 0.97616 0.93840 1.02286 1.21593 0.98156 0.97805 0.97832 1.22005 0.95919 0.92611 0.96956 1.60266 1.22806 1.01952 1.47991 1.22008 0.95353 0.93359 0.96301 0.92493 0.98813 0.98798 0.93649 0.93703 0.92821 0.93165 0.91306 0.91772 0.91244 0.92185 0.91625 0.90081 0.95239 0.89569 0.83051 0.95262 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.98 44.37 29.54 68.60 2.03 46.39 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 9 C 0.03 1.53 5.34 29.85 0.16 1.69 16 10 C 0.08 3.86 5.88 71.98 0.42 4.28 16 11 O -0.42 -17.70 10.34 -148.98 -1.54 -19.24 16 12 C 0.05 1.67 5.69 71.98 0.41 2.08 16 13 C -0.11 -2.70 5.06 30.60 0.15 -2.55 16 14 C -0.07 -1.54 2.35 -10.71 -0.03 -1.56 16 15 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 16 C -0.12 -2.03 5.30 30.70 0.16 -1.87 16 17 C -0.12 -1.71 6.09 30.65 0.19 -1.53 16 18 C 0.05 0.78 6.55 86.32 0.57 1.35 16 19 N -0.70 -11.90 6.85 -514.00 -3.52 -15.42 16 20 C 0.06 1.16 5.57 86.32 0.48 1.64 16 21 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 24 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.05 1.53 6.59 -2.39 -0.02 1.51 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.35 4.86 8.90 -89.69 -0.80 4.06 16 37 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.07 1.49 6.61 -2.39 -0.02 1.48 16 Total: -1.00 -66.78 304.00 0.67 -66.10 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.21 Total: 7.92 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.21 Total: -27.88 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -3.23 Total: -73.30 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.54 Total: -19.24 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.78 0.67 -66.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051917861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.396 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds