Wall clock time and date at job start Mon Mar 30 2020 03:11:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.34780 * 119.99518 * 2 1
4 4 O 1.21281 * 120.00051 * 359.97438 * 3 2 1
5 5 C 1.50704 * 119.99610 * 179.97438 * 3 2 1
6 6 N 1.46900 * 109.46849 * 179.97438 * 5 3 2
7 7 C 1.46896 * 110.99954 * 170.00056 * 6 5 3
8 8 C 1.53233 * 109.34272 * 187.25300 * 7 6 5
9 9 N 1.47079 * 108.52065 * 306.17040 * 8 7 6
10 10 C 1.36937 * 120.88181 * 231.18552 * 9 8 7
11 11 H 1.08003 * 119.99949 * 153.44537 * 10 9 8
12 12 C 1.38808 * 119.99950 * 333.72880 * 10 9 8
13 13 N 1.31620 * 120.00264 * 159.04819 * 12 10 9
14 14 Si 1.86799 * 119.99769 * 339.04035 * 12 10 9
15 15 H 1.48497 * 109.47143 * 92.11599 * 14 12 10
16 16 H 1.48505 * 109.47027 * 212.10995 * 14 12 10
17 17 H 1.48502 * 109.47370 * 332.11164 * 14 12 10
18 18 C 1.47082 * 118.23885 * 51.45445 * 9 8 7
19 19 C 1.46903 * 110.99793 * 294.30113 * 6 5 3
20 20 H 1.09001 * 109.47469 * 60.00890 * 1 2 3
21 21 H 1.09010 * 109.47159 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.47873 * 300.00174 * 1 2 3
23 23 H 0.96995 * 120.00133 * 179.97438 * 2 1 3
24 24 H 1.08996 * 109.47131 * 59.99590 * 5 3 2
25 25 H 1.09004 * 109.46783 * 299.99787 * 5 3 2
26 26 H 1.09000 * 109.49240 * 67.28649 * 7 6 5
27 27 H 1.09005 * 109.49196 * 307.21486 * 7 6 5
28 28 H 1.08998 * 109.63465 * 186.45775 * 8 7 6
29 29 H 1.09002 * 109.63126 * 65.87577 * 8 7 6
30 30 H 0.96999 * 119.99883 * 179.97438 * 13 12 10
31 31 H 1.08996 * 109.62991 * 68.25381 * 18 9 8
32 32 H 1.08998 * 109.63134 * 188.83646 * 18 9 8
33 33 H 1.09004 * 109.49009 * 292.70338 * 19 6 5
34 34 H 1.08999 * 109.49270 * 52.78635 * 19 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1388 1.1673 0.0000
4 8 1.5323 2.2176 -0.0005
5 6 3.6458 1.1673 0.0006
6 7 4.1354 2.5523 -0.0002
7 6 5.5841 2.5987 0.2385
8 6 6.0237 4.0565 0.4105
9 7 5.5606 4.8248 -0.7551
10 6 6.4245 5.6167 -1.4633
11 1 6.2342 5.8258 -2.5057
12 6 7.5481 6.1457 -0.8432
13 7 8.5732 6.5434 -1.5666
14 14 7.6050 6.2934 1.0181
15 1 8.2239 5.0720 1.5928
16 1 8.4117 7.4816 1.3959
17 1 6.2249 6.4440 1.5452
18 6 4.1435 4.7247 -1.1361
19 6 3.7792 3.2359 -1.2507
20 1 -0.3634 0.5137 -0.8901
21 1 -0.3634 -1.0278 0.0005
22 1 -0.3635 0.5138 0.8899
23 1 1.9500 -0.8400 0.0004
24 1 4.0095 0.6532 -0.8891
25 1 4.0088 0.6537 0.8909
26 1 6.1069 2.1588 -0.6108
27 1 5.8219 2.0380 1.1425
28 1 7.1108 4.1063 0.4733
29 1 5.5825 4.4674 1.3186
30 1 9.3581 6.9134 -1.1332
31 1 3.5250 5.1984 -0.3738
32 1 3.9869 5.2162 -2.0962
33 1 4.3272 2.7872 -2.0793
34 1 2.7080 3.1373 -1.4267
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000070130894.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:57
Heat of formation + Delta-G solvation = 9.665272 kcal
Electronic energy + Delta-G solvation = -16324.731470 eV
Core-core repulsion = 13680.041037 eV
Total energy + Delta-G solvation = -2644.690432 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.137 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.81173 -37.82309 -34.70925 -34.29939 -31.56419 -30.30519 -29.07574 -26.68421
-24.48136 -23.20432 -22.14491 -20.50972 -19.37989 -17.23995 -16.81428 -16.05412
-15.57369 -15.21096 -14.42310 -14.34964 -14.01294 -13.93092 -13.55862 -12.99965
-12.70624 -12.49301 -12.39356 -11.88758 -11.73359 -11.52574 -10.86136 -10.59350
-10.22052 -10.00989 -9.92669 -9.61895 -9.38186 -9.21051 -8.56863 -7.94597
-6.88476 -5.89163 -3.23224 2.69093 3.06811 3.36714 3.54192 3.60732
4.29664 4.59539 4.75433 5.06186 5.08487 5.23056 5.31792 5.34927
5.41260 5.60979 5.73587 5.80392 6.02700 6.07888 6.15328 6.26703
6.38465 6.49137 6.65475 6.74898 7.00962 7.23726 7.50989 7.51442
8.01380 8.26869 8.38788 9.00096 9.78444 10.19118 11.27105
Molecular weight = 227.14amu
Principal moments of inertia in cm(-1)
A = 0.059729 B = 0.006493 C = 0.006295
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 468.675360 B = 4311.282613 C = 4447.080333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.744 5.744
3 C 0.511 3.489
4 O -0.513 6.513
5 C 0.035 3.965
6 N -0.519 5.519
7 C 0.044 3.956
8 C 0.131 3.869
9 N -0.610 5.610
10 C -0.256 4.256
11 H 0.085 0.915
12 C 0.021 3.979
13 N -0.912 5.912
14 Si 0.883 3.117
15 H -0.289 1.289
16 H -0.304 1.304
17 H -0.269 1.269
18 C 0.155 3.845
19 C 0.039 3.961
20 H 0.057 0.943
21 H 0.071 0.929
22 H 0.058 0.942
23 H 0.399 0.601
24 H 0.058 0.942
25 H 0.099 0.901
26 H 0.037 0.963
27 H 0.066 0.934
28 H 0.076 0.924
29 H 0.033 0.967
30 H 0.262 0.738
31 H 0.033 0.967
32 H 0.064 0.936
33 H 0.027 0.973
34 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.926 -15.897 3.747 20.223
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.398 5.398
3 C 0.297 3.703
4 O -0.387 6.387
5 C -0.096 4.096
6 N -0.244 5.244
7 C -0.085 4.085
8 C 0.005 3.995
9 N -0.334 5.334
10 C -0.385 4.385
11 H 0.103 0.897
12 C -0.178 4.178
13 N -0.555 5.555
14 Si 0.713 3.287
15 H -0.217 1.217
16 H -0.232 1.232
17 H -0.194 1.194
18 C 0.029 3.971
19 C -0.090 4.090
20 H 0.076 0.924
21 H 0.090 0.910
22 H 0.076 0.924
23 H 0.232 0.768
24 H 0.076 0.924
25 H 0.117 0.883
26 H 0.055 0.945
27 H 0.084 0.916
28 H 0.094 0.906
29 H 0.051 0.949
30 H 0.071 0.929
31 H 0.051 0.949
32 H 0.082 0.918
33 H 0.045 0.955
34 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -12.448 -14.740 4.096 19.723
hybrid contribution 0.771 -0.857 0.427 1.229
sum -11.677 -15.597 4.523 20.002
Atomic orbital electron populations
1.21474 0.79879 1.01800 1.02285 1.45847 1.07599 1.08791 1.77598
1.20777 0.90297 0.83484 0.75746 1.90698 1.70052 1.30967 1.46986
1.21964 0.91728 0.93324 1.02613 1.61660 1.14390 1.11407 1.36929
1.22689 0.86107 1.00098 0.99624 1.21416 0.98534 0.88866 0.90696
1.44469 1.04858 1.51227 1.32857 1.18956 1.02185 1.23654 0.93657
0.89691 1.25253 0.96396 0.98585 0.97537 1.69844 1.04837 1.45689
1.35136 0.86956 0.77765 0.76183 0.87766 1.21665 1.23206 1.19408
1.21068 0.85229 0.92043 0.98808 1.22859 1.00572 0.97189 0.88363
0.92388 0.90979 0.92362 0.76759 0.92379 0.88298 0.94497 0.91591
0.90650 0.94895 0.92853 0.94904 0.91767 0.95502 0.89940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.73 10.70 59.85 0.64 1.37 16
2 N -0.74 -6.88 5.71 -67.07 -0.38 -7.27 16
3 C 0.51 6.96 7.49 -10.98 -0.08 6.88 16
4 O -0.51 -9.28 14.33 5.56 0.08 -9.20 16
5 C 0.04 0.46 5.45 -4.97 -0.03 0.44 16
6 N -0.52 -9.29 4.37 -235.46 -1.03 -10.32 16
7 C 0.04 0.82 5.62 -3.71 -0.02 0.79 16
8 C 0.13 3.01 4.35 -3.61 -0.02 3.00 16
9 N -0.61 -15.44 2.81 -171.74 -0.48 -15.92 16
10 C -0.26 -7.44 10.07 -15.06 -0.15 -7.59 16
11 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16
12 C 0.02 0.61 5.23 -17.43 -0.09 0.52 16
13 N -0.91 -28.51 13.97 55.49 0.78 -27.74 16
14 Si 0.88 23.06 24.31 -169.99 -4.13 18.93 16
15 H -0.29 -7.17 6.59 56.52 0.37 -6.80 16
16 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16
17 H -0.27 -7.06 6.63 56.52 0.37 -6.68 16
18 C 0.15 3.42 6.72 -3.36 -0.02 3.39 16
19 C 0.04 0.74 5.27 -3.46 -0.02 0.73 16
20 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
21 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16
22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
23 H 0.40 2.34 8.83 -40.82 -0.36 1.98 16
24 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16
25 H 0.10 1.05 7.97 -51.93 -0.41 0.64 16
26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.07 1.03 7.99 -51.93 -0.41 0.62 16
28 H 0.08 1.84 4.61 -51.93 -0.24 1.60 16
29 H 0.03 0.78 6.96 -51.93 -0.36 0.42 16
30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16
31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.06 1.38 7.95 -51.93 -0.41 0.97 16
33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.08 1.54 5.77 -51.93 -0.30 1.24 16
LS Contribution 270.16 15.07 4.07 4.07
Total: -1.00 -34.91 270.16 -5.97 -40.88
By element:
Atomic # 1 Polarization: 2.11 SS G_CDS: -5.07 Total: -2.96 kcal
Atomic # 6 Polarization: 9.32 SS G_CDS: 0.21 Total: 9.53 kcal
Atomic # 7 Polarization: -60.13 SS G_CDS: -1.12 Total: -61.25 kcal
Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal
Atomic # 14 Polarization: 23.06 SS G_CDS: -4.13 Total: 18.93 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -34.91 -5.97 -40.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070130894.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.541 kcal
(2) G-P(sol) polarization free energy of solvation -34.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.631 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds