Wall clock time and date at job start Mon Mar 30 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99518 * 2 1 4 4 O 1.21281 * 120.00051 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99610 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.46849 * 179.97438 * 5 3 2 7 7 C 1.46896 * 110.99954 * 170.00056 * 6 5 3 8 8 C 1.53233 * 109.34272 * 187.25300 * 7 6 5 9 9 N 1.47079 * 108.52065 * 306.17040 * 8 7 6 10 10 C 1.36937 * 120.88181 * 231.18552 * 9 8 7 11 11 H 1.08003 * 119.99949 * 153.44537 * 10 9 8 12 12 C 1.38808 * 119.99950 * 333.72880 * 10 9 8 13 13 N 1.31620 * 120.00264 * 159.04819 * 12 10 9 14 14 Si 1.86799 * 119.99769 * 339.04035 * 12 10 9 15 15 H 1.48497 * 109.47143 * 92.11599 * 14 12 10 16 16 H 1.48505 * 109.47027 * 212.10995 * 14 12 10 17 17 H 1.48502 * 109.47370 * 332.11164 * 14 12 10 18 18 C 1.47082 * 118.23885 * 51.45445 * 9 8 7 19 19 C 1.46903 * 110.99793 * 294.30113 * 6 5 3 20 20 H 1.09001 * 109.47469 * 60.00890 * 1 2 3 21 21 H 1.09010 * 109.47159 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47873 * 300.00174 * 1 2 3 23 23 H 0.96995 * 120.00133 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47131 * 59.99590 * 5 3 2 25 25 H 1.09004 * 109.46783 * 299.99787 * 5 3 2 26 26 H 1.09000 * 109.49240 * 67.28649 * 7 6 5 27 27 H 1.09005 * 109.49196 * 307.21486 * 7 6 5 28 28 H 1.08998 * 109.63465 * 186.45775 * 8 7 6 29 29 H 1.09002 * 109.63126 * 65.87577 * 8 7 6 30 30 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.62991 * 68.25381 * 18 9 8 32 32 H 1.08998 * 109.63134 * 188.83646 * 18 9 8 33 33 H 1.09004 * 109.49009 * 292.70338 * 19 6 5 34 34 H 1.08999 * 109.49270 * 52.78635 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 7 4.1354 2.5523 -0.0002 7 6 5.5841 2.5987 0.2385 8 6 6.0237 4.0565 0.4105 9 7 5.5606 4.8248 -0.7551 10 6 6.4245 5.6167 -1.4633 11 1 6.2342 5.8258 -2.5057 12 6 7.5481 6.1457 -0.8432 13 7 8.5732 6.5434 -1.5666 14 14 7.6050 6.2934 1.0181 15 1 8.2239 5.0720 1.5928 16 1 8.4117 7.4816 1.3959 17 1 6.2249 6.4440 1.5452 18 6 4.1435 4.7247 -1.1361 19 6 3.7792 3.2359 -1.2507 20 1 -0.3634 0.5137 -0.8901 21 1 -0.3634 -1.0278 0.0005 22 1 -0.3635 0.5138 0.8899 23 1 1.9500 -0.8400 0.0004 24 1 4.0095 0.6532 -0.8891 25 1 4.0088 0.6537 0.8909 26 1 6.1069 2.1588 -0.6108 27 1 5.8219 2.0380 1.1425 28 1 7.1108 4.1063 0.4733 29 1 5.5825 4.4674 1.3186 30 1 9.3581 6.9134 -1.1332 31 1 3.5250 5.1984 -0.3738 32 1 3.9869 5.2162 -2.0962 33 1 4.3272 2.7872 -2.0793 34 1 2.7080 3.1373 -1.4267 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070130894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:57 Heat of formation + Delta-G solvation = 9.665272 kcal Electronic energy + Delta-G solvation = -16324.731470 eV Core-core repulsion = 13680.041037 eV Total energy + Delta-G solvation = -2644.690432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.81173 -37.82309 -34.70925 -34.29939 -31.56419 -30.30519 -29.07574 -26.68421 -24.48136 -23.20432 -22.14491 -20.50972 -19.37989 -17.23995 -16.81428 -16.05412 -15.57369 -15.21096 -14.42310 -14.34964 -14.01294 -13.93092 -13.55862 -12.99965 -12.70624 -12.49301 -12.39356 -11.88758 -11.73359 -11.52574 -10.86136 -10.59350 -10.22052 -10.00989 -9.92669 -9.61895 -9.38186 -9.21051 -8.56863 -7.94597 -6.88476 -5.89163 -3.23224 2.69093 3.06811 3.36714 3.54192 3.60732 4.29664 4.59539 4.75433 5.06186 5.08487 5.23056 5.31792 5.34927 5.41260 5.60979 5.73587 5.80392 6.02700 6.07888 6.15328 6.26703 6.38465 6.49137 6.65475 6.74898 7.00962 7.23726 7.50989 7.51442 8.01380 8.26869 8.38788 9.00096 9.78444 10.19118 11.27105 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.059729 B = 0.006493 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.675360 B = 4311.282613 C = 4447.080333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.744 5.744 3 C 0.511 3.489 4 O -0.513 6.513 5 C 0.035 3.965 6 N -0.519 5.519 7 C 0.044 3.956 8 C 0.131 3.869 9 N -0.610 5.610 10 C -0.256 4.256 11 H 0.085 0.915 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 0.883 3.117 15 H -0.289 1.289 16 H -0.304 1.304 17 H -0.269 1.269 18 C 0.155 3.845 19 C 0.039 3.961 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.399 0.601 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 -15.897 3.747 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.398 5.398 3 C 0.297 3.703 4 O -0.387 6.387 5 C -0.096 4.096 6 N -0.244 5.244 7 C -0.085 4.085 8 C 0.005 3.995 9 N -0.334 5.334 10 C -0.385 4.385 11 H 0.103 0.897 12 C -0.178 4.178 13 N -0.555 5.555 14 Si 0.713 3.287 15 H -0.217 1.217 16 H -0.232 1.232 17 H -0.194 1.194 18 C 0.029 3.971 19 C -0.090 4.090 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.232 0.768 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.448 -14.740 4.096 19.723 hybrid contribution 0.771 -0.857 0.427 1.229 sum -11.677 -15.597 4.523 20.002 Atomic orbital electron populations 1.21474 0.79879 1.01800 1.02285 1.45847 1.07599 1.08791 1.77598 1.20777 0.90297 0.83484 0.75746 1.90698 1.70052 1.30967 1.46986 1.21964 0.91728 0.93324 1.02613 1.61660 1.14390 1.11407 1.36929 1.22689 0.86107 1.00098 0.99624 1.21416 0.98534 0.88866 0.90696 1.44469 1.04858 1.51227 1.32857 1.18956 1.02185 1.23654 0.93657 0.89691 1.25253 0.96396 0.98585 0.97537 1.69844 1.04837 1.45689 1.35136 0.86956 0.77765 0.76183 0.87766 1.21665 1.23206 1.19408 1.21068 0.85229 0.92043 0.98808 1.22859 1.00572 0.97189 0.88363 0.92388 0.90979 0.92362 0.76759 0.92379 0.88298 0.94497 0.91591 0.90650 0.94895 0.92853 0.94904 0.91767 0.95502 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.70 59.85 0.64 1.37 16 2 N -0.74 -6.88 5.71 -67.07 -0.38 -7.27 16 3 C 0.51 6.96 7.49 -10.98 -0.08 6.88 16 4 O -0.51 -9.28 14.33 5.56 0.08 -9.20 16 5 C 0.04 0.46 5.45 -4.97 -0.03 0.44 16 6 N -0.52 -9.29 4.37 -235.46 -1.03 -10.32 16 7 C 0.04 0.82 5.62 -3.71 -0.02 0.79 16 8 C 0.13 3.01 4.35 -3.61 -0.02 3.00 16 9 N -0.61 -15.44 2.81 -171.74 -0.48 -15.92 16 10 C -0.26 -7.44 10.07 -15.06 -0.15 -7.59 16 11 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 12 C 0.02 0.61 5.23 -17.43 -0.09 0.52 16 13 N -0.91 -28.51 13.97 55.49 0.78 -27.74 16 14 Si 0.88 23.06 24.31 -169.99 -4.13 18.93 16 15 H -0.29 -7.17 6.59 56.52 0.37 -6.80 16 16 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 17 H -0.27 -7.06 6.63 56.52 0.37 -6.68 16 18 C 0.15 3.42 6.72 -3.36 -0.02 3.39 16 19 C 0.04 0.74 5.27 -3.46 -0.02 0.73 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.40 2.34 8.83 -40.82 -0.36 1.98 16 24 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 25 H 0.10 1.05 7.97 -51.93 -0.41 0.64 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.03 7.99 -51.93 -0.41 0.62 16 28 H 0.08 1.84 4.61 -51.93 -0.24 1.60 16 29 H 0.03 0.78 6.96 -51.93 -0.36 0.42 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.38 7.95 -51.93 -0.41 0.97 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.54 5.77 -51.93 -0.30 1.24 16 LS Contribution 270.16 15.07 4.07 4.07 Total: -1.00 -34.91 270.16 -5.97 -40.88 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.07 Total: -2.96 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 0.21 Total: 9.53 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -1.12 Total: -61.25 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.13 Total: 18.93 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.91 -5.97 -40.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070130894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.541 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds