Wall clock time and date at job start Mon Mar 30 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99518 * 2 1 4 4 O 1.21281 * 120.00051 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99610 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.46849 * 179.97438 * 5 3 2 7 7 C 1.46896 * 110.99954 * 170.00056 * 6 5 3 8 8 C 1.53233 * 109.34272 * 187.25300 * 7 6 5 9 9 N 1.47079 * 108.52065 * 306.17040 * 8 7 6 10 10 C 1.36937 * 120.88181 * 231.18552 * 9 8 7 11 11 H 1.08003 * 119.99949 * 153.44537 * 10 9 8 12 12 C 1.38808 * 119.99950 * 333.72880 * 10 9 8 13 13 N 1.31620 * 120.00264 * 159.04819 * 12 10 9 14 14 Si 1.86799 * 119.99769 * 339.04035 * 12 10 9 15 15 H 1.48497 * 109.47143 * 92.11599 * 14 12 10 16 16 H 1.48505 * 109.47027 * 212.10995 * 14 12 10 17 17 H 1.48502 * 109.47370 * 332.11164 * 14 12 10 18 18 C 1.47082 * 118.23885 * 51.45445 * 9 8 7 19 19 C 1.46903 * 110.99793 * 294.30113 * 6 5 3 20 20 H 1.09001 * 109.47469 * 60.00890 * 1 2 3 21 21 H 1.09010 * 109.47159 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47873 * 300.00174 * 1 2 3 23 23 H 0.96995 * 120.00133 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47131 * 59.99590 * 5 3 2 25 25 H 1.09004 * 109.46783 * 299.99787 * 5 3 2 26 26 H 1.09000 * 109.49240 * 67.28649 * 7 6 5 27 27 H 1.09005 * 109.49196 * 307.21486 * 7 6 5 28 28 H 1.08998 * 109.63465 * 186.45775 * 8 7 6 29 29 H 1.09002 * 109.63126 * 65.87577 * 8 7 6 30 30 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.62991 * 68.25381 * 18 9 8 32 32 H 1.08998 * 109.63134 * 188.83646 * 18 9 8 33 33 H 1.09004 * 109.49009 * 292.70338 * 19 6 5 34 34 H 1.08999 * 109.49270 * 52.78635 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 7 4.1354 2.5523 -0.0002 7 6 5.5841 2.5987 0.2385 8 6 6.0237 4.0565 0.4105 9 7 5.5606 4.8248 -0.7551 10 6 6.4245 5.6167 -1.4633 11 1 6.2342 5.8258 -2.5057 12 6 7.5481 6.1457 -0.8432 13 7 8.5732 6.5434 -1.5666 14 14 7.6050 6.2934 1.0181 15 1 8.2239 5.0720 1.5928 16 1 8.4117 7.4816 1.3959 17 1 6.2249 6.4440 1.5452 18 6 4.1435 4.7247 -1.1361 19 6 3.7792 3.2359 -1.2507 20 1 -0.3634 0.5137 -0.8901 21 1 -0.3634 -1.0278 0.0005 22 1 -0.3635 0.5138 0.8899 23 1 1.9500 -0.8400 0.0004 24 1 4.0095 0.6532 -0.8891 25 1 4.0088 0.6537 0.8909 26 1 6.1069 2.1588 -0.6108 27 1 5.8219 2.0380 1.1425 28 1 7.1108 4.1063 0.4733 29 1 5.5825 4.4674 1.3186 30 1 9.3581 6.9134 -1.1332 31 1 3.5250 5.1984 -0.3738 32 1 3.9869 5.2162 -2.0962 33 1 4.3272 2.7872 -2.0793 34 1 2.7080 3.1373 -1.4267 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070130894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:57 Heat of formation + Delta-G solvation = -19.549933 kcal Electronic energy + Delta-G solvation = -16325.998336 eV Core-core repulsion = 13680.041037 eV Total energy + Delta-G solvation = -2645.957299 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.92986 -39.33024 -36.18983 -35.48489 -33.65651 -31.96218 -30.39845 -27.98962 -25.90864 -24.87188 -23.87982 -21.51818 -21.07584 -18.84849 -18.21434 -17.44225 -16.81260 -16.61338 -15.99274 -15.77021 -15.63891 -15.45216 -14.98518 -14.42268 -14.11548 -14.05510 -13.81032 -13.39034 -13.03885 -12.83666 -12.69711 -12.31253 -12.09817 -11.85464 -11.66187 -11.51058 -10.92869 -10.61739 -10.06481 -9.34230 -8.91234 -8.17796 -5.49379 1.28543 1.42077 1.52719 1.69172 2.19438 2.40943 2.97284 3.08646 3.35613 3.90486 4.11206 4.22086 4.27035 4.35705 4.49584 4.51524 4.54073 4.59230 4.66890 4.72546 4.82488 4.96029 4.98936 5.00185 5.25527 5.51377 5.81040 6.01150 6.07679 6.14152 6.65609 6.87844 7.36438 7.59145 8.02819 9.02246 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.059729 B = 0.006493 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.675360 B = 4311.282613 C = 4447.080333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.724 5.724 3 C 0.507 3.493 4 O -0.568 6.568 5 C 0.036 3.964 6 N -0.536 5.536 7 C 0.055 3.945 8 C 0.122 3.878 9 N -0.623 5.623 10 C -0.252 4.252 11 H 0.052 0.948 12 C -0.032 4.032 13 N -0.956 5.956 14 Si 0.948 3.052 15 H -0.264 1.264 16 H -0.308 1.308 17 H -0.272 1.272 18 C 0.150 3.850 19 C 0.056 3.944 20 H 0.045 0.955 21 H 0.112 0.888 22 H 0.046 0.954 23 H 0.419 0.581 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.035 0.965 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.684 -18.795 5.377 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.378 5.378 3 C 0.294 3.706 4 O -0.446 6.446 5 C -0.094 4.094 6 N -0.261 5.261 7 C -0.074 4.074 8 C -0.003 4.003 9 N -0.348 5.348 10 C -0.382 4.382 11 H 0.069 0.931 12 C -0.227 4.227 13 N -0.602 5.602 14 Si 0.777 3.223 15 H -0.190 1.190 16 H -0.237 1.237 17 H -0.197 1.197 18 C 0.025 3.975 19 C -0.073 4.073 20 H 0.064 0.936 21 H 0.131 0.869 22 H 0.064 0.936 23 H 0.256 0.744 24 H 0.099 0.901 25 H 0.151 0.849 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.232 -17.739 5.743 22.863 hybrid contribution 0.904 -0.021 -0.141 0.915 sum -12.329 -17.760 5.601 22.334 Atomic orbital electron populations 1.21617 0.78975 1.04075 1.01106 1.45699 1.08224 1.08496 1.75415 1.20944 0.90631 0.83801 0.75230 1.90686 1.70956 1.33028 1.49920 1.22088 0.91373 0.90693 1.05269 1.61528 1.13913 1.14693 1.35998 1.22499 0.86542 0.96894 1.01433 1.21490 0.97678 0.91698 0.89401 1.44587 1.05584 1.51324 1.33321 1.18893 1.02650 1.23898 0.92744 0.93062 1.25850 0.96061 0.98861 1.01920 1.69960 1.05652 1.47566 1.37055 0.85900 0.77444 0.76716 0.82245 1.19037 1.23709 1.19708 1.21162 0.83535 0.94679 0.98129 1.22551 1.00638 0.94864 0.89235 0.93639 0.86948 0.93561 0.74396 0.90098 0.84938 0.94719 0.87665 0.92170 0.95214 0.92804 0.95713 0.92376 0.95745 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 10.70 127.77 1.37 2.52 16 2 N -0.72 -10.84 5.71 -484.50 -2.77 -13.61 16 3 C 0.51 12.39 7.49 87.66 0.66 13.05 16 4 O -0.57 -19.81 14.33 -3.03 -0.04 -19.85 16 5 C 0.04 0.80 5.45 85.56 0.47 1.27 16 6 N -0.54 -17.73 4.37 -898.87 -3.93 -21.66 16 7 C 0.06 1.87 5.62 86.38 0.49 2.36 16 8 C 0.12 5.44 4.35 86.35 0.38 5.81 16 9 N -0.62 -31.62 2.81 -697.25 -1.96 -33.58 16 10 C -0.25 -15.02 10.07 84.03 0.85 -14.17 16 11 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 12 C -0.03 -1.93 5.23 84.86 0.44 -1.49 16 13 N -0.96 -61.18 13.97 21.65 0.30 -60.88 16 14 Si 0.95 48.03 24.31 68.60 1.67 49.70 16 15 H -0.26 -12.24 6.59 99.48 0.66 -11.58 16 16 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 17 H -0.27 -13.76 6.63 99.48 0.66 -13.10 16 18 C 0.15 6.69 6.72 86.50 0.58 7.28 16 19 C 0.06 2.08 5.27 86.54 0.46 2.54 16 20 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 22 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.42 2.98 8.83 -92.71 -0.82 2.16 16 24 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 25 H 0.13 2.07 7.97 -2.38 -0.02 2.05 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.11 2.76 7.99 -2.38 -0.02 2.75 16 28 H 0.06 2.84 4.61 -2.39 -0.01 2.83 16 29 H 0.03 1.35 6.96 -2.39 -0.02 1.33 16 30 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 2.58 7.95 -2.39 -0.02 2.56 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 3.19 5.77 -2.39 -0.01 3.18 16 Total: -1.00 -77.55 270.16 -0.88 -78.43 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 0.17 Total: 2.28 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 5.68 Total: 19.17 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -8.36 Total: -129.73 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.04 Total: -19.85 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 1.67 Total: 49.70 kcal Total: -77.55 -0.88 -78.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070130894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.878 kcal (2) G-P(sol) polarization free energy of solvation -77.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds