Wall clock time and date at job start Mon Mar 30 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99936 * 2 1 4 4 C 1.50697 * 109.47191 * 293.95004 * 3 2 1 5 5 O 1.21297 * 120.00167 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00479 * 179.97438 * 4 3 2 7 7 C 1.37098 * 120.00060 * 180.27318 * 6 4 3 8 8 H 1.07994 * 120.00323 * 359.73294 * 7 6 4 9 9 C 1.38952 * 119.99845 * 179.72587 * 7 6 4 10 10 N 1.31410 * 120.00081 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99949 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.47130 * 90.00015 * 11 9 7 13 13 H 1.48499 * 109.47279 * 209.99665 * 11 9 7 14 14 H 1.48503 * 109.47389 * 329.99969 * 11 9 7 15 15 C 1.46901 * 110.99803 * 123.95041 * 2 1 3 16 16 H 1.09006 * 110.64420 * 297.17230 * 15 2 1 17 17 C 1.54594 * 110.72191 * 174.02145 * 15 2 1 18 18 C 1.53997 * 105.14042 * 219.68553 * 17 15 2 19 19 N 1.47902 * 107.05756 * 358.77555 * 18 17 15 20 20 C 1.48536 * 105.82053 * 25.32826 * 19 18 17 21 21 H 1.08996 * 109.47351 * 65.72867 * 1 2 3 22 22 H 1.08998 * 109.47344 * 185.73642 * 1 2 3 23 23 H 1.09002 * 109.46942 * 305.73321 * 1 2 3 24 24 H 1.09002 * 109.47430 * 173.95605 * 3 2 1 25 25 H 1.08999 * 109.47714 * 53.95487 * 3 2 1 26 26 H 0.97004 * 119.99658 * 0.02562 * 6 4 3 27 27 H 0.97004 * 120.00121 * 179.97438 * 10 9 7 28 28 H 1.08996 * 110.31462 * 338.60235 * 17 15 2 29 29 H 1.09004 * 110.30997 * 100.66934 * 17 15 2 30 30 H 1.08994 * 109.91755 * 118.12671 * 18 17 15 31 31 H 1.09002 * 109.91697 * 239.22552 * 18 17 15 32 32 H 1.00901 * 110.99795 * 264.81646 * 19 18 17 33 33 H 1.08993 * 110.66868 * 202.35773 * 20 19 18 34 34 H 1.09002 * 110.66325 * 79.22455 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0047 1.4455 -2.1409 6 7 2.0180 3.3201 -1.5234 7 6 1.6871 3.9366 -2.7024 8 1 1.1248 3.4007 -3.4527 9 6 2.0750 5.2510 -2.9319 10 7 1.7574 5.8421 -4.0618 11 14 3.0481 6.1777 -1.6343 12 1 4.5007 5.9707 -1.8632 13 1 2.7349 7.6267 -1.7217 14 1 2.6824 5.6726 -0.2866 15 6 1.9954 -0.7659 1.1377 16 1 1.6982 -0.3067 2.0806 17 6 3.5340 -0.8883 1.0497 18 6 3.8495 -2.3265 1.5008 19 7 2.5617 -2.9635 1.8518 20 6 1.5261 -2.2409 1.0697 21 1 -0.3634 0.4224 -0.9368 22 1 -0.3634 -1.0225 0.1027 23 1 -0.3633 0.6002 0.8342 24 1 3.0797 1.3444 0.1082 25 1 1.5611 1.9274 0.8309 26 1 2.5233 3.8014 -0.8496 27 1 2.0279 6.7598 -4.2218 28 1 3.8680 -0.7316 0.0241 29 1 4.0095 -0.1683 1.7159 30 1 4.3255 -2.8746 0.6878 31 1 4.5068 -2.3072 2.3701 32 1 2.3816 -2.8931 2.8421 33 1 0.5458 -2.3544 1.5324 34 1 1.5087 -2.5919 0.0379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070894458.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:25 Heat of formation + Delta-G solvation = -16.339882 kcal Electronic energy + Delta-G solvation = -16015.017871 eV Core-core repulsion = 13369.199771 eV Total energy + Delta-G solvation = -2645.818101 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.43992 -38.13167 -35.40055 -33.84423 -31.67612 -29.77190 -28.86689 -27.46189 -24.97116 -23.22463 -21.56496 -19.98703 -19.29292 -18.21699 -16.85229 -16.42161 -15.56265 -15.02820 -14.43686 -14.37290 -13.83380 -13.76179 -13.35396 -13.00875 -12.74786 -12.47240 -12.17741 -11.88870 -11.72113 -11.37084 -11.12561 -11.00531 -10.88254 -10.73289 -10.60316 -9.97853 -9.54306 -8.88265 -8.53492 -8.18191 -7.95735 -6.31090 -3.82334 3.01578 3.06114 3.14230 3.73922 3.82668 4.09789 4.17628 4.58872 4.79585 4.87508 4.93550 5.19246 5.24859 5.31433 5.48563 5.55410 5.63684 5.75622 5.78131 5.87194 5.89358 5.94475 5.99114 6.13687 6.51889 6.53958 7.15076 7.17555 7.34003 7.58861 8.14957 8.60600 8.95582 9.42678 9.84081 10.82122 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.046808 B = 0.005972 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.047255 B = 4687.279150 C = 5030.811616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.506 5.506 3 C 0.042 3.958 4 C 0.454 3.546 5 O -0.558 6.558 6 N -0.592 5.592 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.042 3.958 10 N -0.882 5.882 11 Si 0.879 3.121 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.271 1.271 15 C 0.046 3.954 16 H 0.042 0.958 17 C -0.150 4.150 18 C 0.045 3.955 19 N -0.674 5.674 20 C 0.053 3.947 21 H 0.098 0.902 22 H 0.062 0.938 23 H 0.015 0.985 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.370 0.630 27 H 0.273 0.727 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.333 0.667 33 H 0.071 0.929 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -10.429 14.604 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.230 5.230 3 C -0.090 4.090 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.232 5.232 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.161 4.161 10 N -0.522 5.522 11 Si 0.705 3.295 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.196 1.196 15 C -0.065 4.065 16 H 0.059 0.941 17 C -0.189 4.189 18 C -0.085 4.085 19 N -0.300 5.300 20 C -0.077 4.077 21 H 0.116 0.884 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.202 0.798 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.982 -11.491 13.016 17.617 hybrid contribution 0.515 2.396 2.203 3.295 sum 3.497 -9.095 15.219 18.071 Atomic orbital electron populations 1.22588 0.86475 1.00969 1.02762 1.61700 1.08679 1.12377 1.40243 1.21944 1.00902 0.89299 0.96852 1.19633 0.85048 0.82456 0.88934 1.90522 1.42552 1.64126 1.46797 1.42215 1.51059 1.11907 1.17984 1.19429 1.33803 0.96129 0.93905 0.86252 1.25027 0.97893 0.96472 0.96735 1.69620 1.45728 1.13464 1.23379 0.86685 0.80945 0.80497 0.81325 1.19589 1.20178 1.19614 1.23305 0.95146 0.95788 0.92212 0.94056 1.22884 0.95048 0.97587 1.03398 1.22684 0.92247 0.92618 1.00913 1.62781 1.02479 1.54094 1.10693 1.23171 0.94412 0.89684 1.00436 0.88359 0.91963 0.96676 0.89313 0.93585 0.79784 0.91627 0.89525 0.91718 0.90358 0.91781 0.85203 0.91004 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.07 60.06 0.54 0.86 16 2 N -0.51 -8.18 4.33 -234.09 -1.01 -9.19 16 3 C 0.04 0.72 5.30 -4.98 -0.03 0.69 16 4 C 0.45 10.40 7.54 -10.99 -0.08 10.31 16 5 O -0.56 -14.93 13.88 5.54 0.08 -14.85 16 6 N -0.59 -14.22 5.09 -10.96 -0.06 -14.27 16 7 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 10 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 11 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 15 C 0.05 0.58 2.75 -65.85 -0.18 0.40 16 16 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 17 C -0.15 -1.71 5.32 -25.37 -0.14 -1.85 16 18 C 0.05 0.45 7.52 -2.75 -0.02 0.43 16 19 N -0.67 -6.98 7.51 -110.08 -0.83 -7.81 16 20 C 0.05 0.61 5.90 -1.90 -0.01 0.59 16 21 H 0.10 1.91 6.00 -51.93 -0.31 1.60 16 22 H 0.06 0.83 6.62 -51.93 -0.34 0.49 16 23 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 24 H 0.09 1.36 6.77 -51.93 -0.35 1.01 16 25 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 26 H 0.37 7.81 5.76 -40.82 -0.24 7.58 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 28 H 0.09 1.15 7.81 -51.93 -0.41 0.74 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.33 2.83 8.92 -39.29 -0.35 2.48 16 33 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 274.51 15.07 4.14 4.14 Total: -1.00 -31.72 274.51 -6.69 -38.42 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.91 Total: 10.22 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.16 Total: 3.70 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -1.12 Total: -56.34 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.72 -6.69 -38.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894458.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.078 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds