Wall clock time and date at job start Mon Mar 30 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99936 * 2 1 4 4 C 1.50697 * 109.47191 * 293.95004 * 3 2 1 5 5 O 1.21297 * 120.00167 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00479 * 179.97438 * 4 3 2 7 7 C 1.37098 * 120.00060 * 180.27318 * 6 4 3 8 8 H 1.07994 * 120.00323 * 359.73294 * 7 6 4 9 9 C 1.38952 * 119.99845 * 179.72587 * 7 6 4 10 10 N 1.31410 * 120.00081 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99949 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.47130 * 90.00015 * 11 9 7 13 13 H 1.48499 * 109.47279 * 209.99665 * 11 9 7 14 14 H 1.48503 * 109.47389 * 329.99969 * 11 9 7 15 15 C 1.46901 * 110.99803 * 123.95041 * 2 1 3 16 16 H 1.09006 * 110.64420 * 297.17230 * 15 2 1 17 17 C 1.54594 * 110.72191 * 174.02145 * 15 2 1 18 18 C 1.53997 * 105.14042 * 219.68553 * 17 15 2 19 19 N 1.47902 * 107.05756 * 358.77555 * 18 17 15 20 20 C 1.48536 * 105.82053 * 25.32826 * 19 18 17 21 21 H 1.08996 * 109.47351 * 65.72867 * 1 2 3 22 22 H 1.08998 * 109.47344 * 185.73642 * 1 2 3 23 23 H 1.09002 * 109.46942 * 305.73321 * 1 2 3 24 24 H 1.09002 * 109.47430 * 173.95605 * 3 2 1 25 25 H 1.08999 * 109.47714 * 53.95487 * 3 2 1 26 26 H 0.97004 * 119.99658 * 0.02562 * 6 4 3 27 27 H 0.97004 * 120.00121 * 179.97438 * 10 9 7 28 28 H 1.08996 * 110.31462 * 338.60235 * 17 15 2 29 29 H 1.09004 * 110.30997 * 100.66934 * 17 15 2 30 30 H 1.08994 * 109.91755 * 118.12671 * 18 17 15 31 31 H 1.09002 * 109.91697 * 239.22552 * 18 17 15 32 32 H 1.00901 * 110.99795 * 264.81646 * 19 18 17 33 33 H 1.08993 * 110.66868 * 202.35773 * 20 19 18 34 34 H 1.09002 * 110.66325 * 79.22455 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0047 1.4455 -2.1409 6 7 2.0180 3.3201 -1.5234 7 6 1.6871 3.9366 -2.7024 8 1 1.1248 3.4007 -3.4527 9 6 2.0750 5.2510 -2.9319 10 7 1.7574 5.8421 -4.0618 11 14 3.0481 6.1777 -1.6343 12 1 4.5007 5.9707 -1.8632 13 1 2.7349 7.6267 -1.7217 14 1 2.6824 5.6726 -0.2866 15 6 1.9954 -0.7659 1.1377 16 1 1.6982 -0.3067 2.0806 17 6 3.5340 -0.8883 1.0497 18 6 3.8495 -2.3265 1.5008 19 7 2.5617 -2.9635 1.8518 20 6 1.5261 -2.2409 1.0697 21 1 -0.3634 0.4224 -0.9368 22 1 -0.3634 -1.0225 0.1027 23 1 -0.3633 0.6002 0.8342 24 1 3.0797 1.3444 0.1082 25 1 1.5611 1.9274 0.8309 26 1 2.5233 3.8014 -0.8496 27 1 2.0279 6.7598 -4.2218 28 1 3.8680 -0.7316 0.0241 29 1 4.0095 -0.1683 1.7159 30 1 4.3255 -2.8746 0.6878 31 1 4.5068 -2.3072 2.3701 32 1 2.3816 -2.8931 2.8421 33 1 0.5458 -2.3544 1.5324 34 1 1.5087 -2.5919 0.0379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070894458.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:25 Heat of formation + Delta-G solvation = -43.789005 kcal Electronic energy + Delta-G solvation = -16016.208155 eV Core-core repulsion = 13369.199771 eV Total energy + Delta-G solvation = -2647.008384 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76566 -39.60678 -36.69760 -35.78434 -33.76592 -30.69907 -30.12550 -28.62656 -26.73802 -24.65502 -22.43962 -21.37027 -20.90763 -20.09769 -17.94108 -17.67793 -16.95720 -16.85522 -15.91635 -15.75792 -15.23481 -14.99870 -14.66317 -14.49195 -14.21818 -13.94275 -13.53357 -13.25308 -12.98206 -12.79992 -12.43316 -12.36437 -12.09384 -11.98262 -11.87477 -11.59848 -11.48570 -10.41870 -10.24721 -9.61804 -9.23539 -8.41963 -6.02776 1.28618 1.34422 1.43137 1.94090 2.21986 2.55836 3.12128 3.16149 3.38520 3.71033 3.99537 4.04653 4.13104 4.30283 4.35122 4.42134 4.46747 4.57211 4.59377 4.73356 4.95523 5.04726 5.08852 5.13891 5.26890 5.52058 5.70111 5.88628 5.98858 6.23192 6.50065 6.59156 6.87776 7.38745 7.96288 8.75795 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.046808 B = 0.005972 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.047255 B = 4687.279150 C = 5030.811616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.529 5.529 3 C 0.055 3.945 4 C 0.451 3.549 5 O -0.605 6.605 6 N -0.592 5.592 7 C -0.328 4.328 8 H 0.055 0.945 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.964 3.036 12 H -0.256 1.256 13 H -0.274 1.274 14 H -0.233 1.233 15 C 0.048 3.952 16 H 0.060 0.940 17 C -0.149 4.149 18 C 0.048 3.952 19 N -0.677 5.677 20 C 0.056 3.944 21 H 0.053 0.947 22 H 0.083 0.917 23 H 0.030 0.970 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.389 0.611 27 H 0.279 0.721 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.348 0.652 33 H 0.086 0.914 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -10.423 18.563 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C -0.076 4.076 4 C 0.239 3.761 5 O -0.489 6.489 6 N -0.234 5.234 7 C -0.457 4.457 8 H 0.073 0.927 9 C -0.213 4.213 10 N -0.575 5.575 11 Si 0.784 3.216 12 H -0.181 1.181 13 H -0.199 1.199 14 H -0.156 1.156 15 C -0.062 4.062 16 H 0.078 0.922 17 C -0.188 4.188 18 C -0.082 4.082 19 N -0.305 5.305 20 C -0.074 4.074 21 H 0.072 0.928 22 H 0.101 0.899 23 H 0.048 0.952 24 H 0.133 0.867 25 H 0.092 0.908 26 H 0.224 0.776 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.164 0.836 33 H 0.105 0.895 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.662 -11.516 17.010 21.064 hybrid contribution -0.079 2.266 0.881 2.432 sum 4.583 -9.250 17.890 20.655 Atomic orbital electron populations 1.22443 0.86726 1.02218 1.00895 1.61611 1.08764 1.12101 1.42931 1.21841 1.02619 0.89724 0.93460 1.20868 0.82979 0.81831 0.90449 1.90516 1.44109 1.65152 1.49080 1.42039 1.51806 1.12518 1.17071 1.18999 1.34876 0.96929 0.94896 0.92675 1.26099 0.98625 0.96908 0.99652 1.69804 1.47213 1.14250 1.26269 0.85378 0.79065 0.78186 0.78972 1.18083 1.19939 1.15600 1.23397 0.95793 0.95615 0.91351 0.92208 1.22892 0.94262 0.99071 1.02561 1.22674 0.92395 0.91463 1.01649 1.62707 1.02245 1.53928 1.11633 1.23067 0.95602 0.89124 0.99566 0.92836 0.89863 0.95150 0.86706 0.90768 0.77594 0.91132 0.91833 0.89735 0.91375 0.89298 0.83594 0.89522 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.07 127.69 1.16 1.93 16 2 N -0.53 -16.23 4.33 -894.54 -3.88 -20.11 16 3 C 0.05 1.75 5.30 85.56 0.45 2.20 16 4 C 0.45 20.77 7.54 87.66 0.66 21.43 16 5 O -0.60 -33.90 13.88 -3.08 -0.04 -33.95 16 6 N -0.59 -28.32 5.09 -306.98 -1.56 -29.89 16 7 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 8 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 9 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 10 N -0.93 -56.68 13.96 21.66 0.30 -56.38 16 11 Si 0.96 38.88 27.74 68.60 1.90 40.79 16 12 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 15 C 0.05 1.06 2.75 46.12 0.13 1.19 16 16 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 17 C -0.15 -2.93 5.32 31.47 0.17 -2.76 16 18 C 0.05 0.81 7.52 86.45 0.65 1.46 16 19 N -0.68 -12.01 7.51 -502.20 -3.77 -15.78 16 20 C 0.06 1.17 5.90 86.65 0.51 1.68 16 21 H 0.05 2.14 6.00 -2.39 -0.01 2.13 16 22 H 0.08 2.14 6.62 -2.39 -0.02 2.12 16 23 H 0.03 0.82 8.07 -2.39 -0.02 0.80 16 24 H 0.12 3.10 6.77 -2.39 -0.02 3.08 16 25 H 0.07 2.00 8.06 -2.39 -0.02 1.98 16 26 H 0.39 15.38 5.76 -92.71 -0.53 14.84 16 27 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.06 1.57 7.81 -2.39 -0.02 1.55 16 29 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.35 4.59 8.92 -89.69 -0.80 3.79 16 33 H 0.09 1.51 7.77 -2.39 -0.02 1.50 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -74.48 274.51 -2.28 -76.76 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.28 Total: 30.30 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.05 Total: 8.26 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -8.91 Total: -122.16 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.04 Total: -33.95 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.90 Total: 40.79 kcal Total: -74.48 -2.28 -76.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894458.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.973 kcal (2) G-P(sol) polarization free energy of solvation -74.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds