Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46903 * 110.99673 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46899 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47054 * 304.99730 * 13 12 11 15 15 C 1.52996 * 109.47125 * 64.99825 * 13 12 11 16 16 C 1.53003 * 109.47125 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47291 * 300.00064 * 16 15 13 18 18 C 1.52995 * 109.47066 * 59.99517 * 17 16 15 19 19 C 1.52997 * 109.46971 * 184.99686 * 13 12 11 20 20 H 1.09002 * 109.47268 * 299.99913 * 19 13 12 21 21 O 1.42896 * 109.47074 * 59.99749 * 19 13 12 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.00894 * 110.99951 * 56.04708 * 11 10 9 28 28 H 1.09003 * 109.46666 * 299.99374 * 12 11 10 29 29 H 1.08993 * 109.47307 * 59.99613 * 12 11 10 30 30 H 1.09005 * 109.47199 * 299.99364 * 15 13 12 31 31 H 1.08990 * 109.47596 * 59.99880 * 15 13 12 32 32 H 1.09002 * 109.47054 * 59.99905 * 16 15 13 33 33 H 1.09002 * 109.47326 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47588 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.46942 * 299.99909 * 17 16 15 36 36 H 1.09002 * 109.47609 * 60.00675 * 18 17 16 37 37 H 1.09006 * 109.47185 * 180.02562 * 18 17 16 38 38 H 0.96703 * 114.00253 * 179.97438 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4355 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0019 14 1 0.9421 -7.3818 0.8392 15 6 0.8505 -7.4955 -1.3100 16 6 0.0510 -8.8000 -1.3116 17 6 1.0094 -9.9858 -1.1856 18 6 1.7944 -9.8703 0.1225 19 6 2.5935 -8.5661 0.1244 20 1 3.2868 -8.5644 -0.7167 21 8 3.3267 -8.4583 1.3462 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.8748 -4.9841 -0.7827 28 1 3.0640 -6.0347 -0.8902 29 1 3.0628 -6.0348 0.8898 30 1 0.1678 -6.6504 -1.4000 31 1 1.5437 -7.4937 -2.1511 32 1 -0.6423 -8.8022 -0.4705 33 1 -0.5086 -8.8821 -2.2434 34 1 0.4399 -10.9152 -1.1872 35 1 1.7027 -9.9836 -2.0268 36 1 1.1013 -9.8726 0.9637 37 1 2.4777 -10.7149 0.2121 38 1 3.9548 -9.1788 1.4930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083014417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = -87.141119 kcal Electronic energy + Delta-G solvation = -15875.866474 eV Core-core repulsion = 13330.518545 eV Total energy + Delta-G solvation = -2545.347929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40466 -36.02696 -35.40136 -33.10093 -31.38338 -29.76595 -28.58597 -25.11233 -23.51323 -22.40670 -20.95443 -20.43041 -19.82009 -17.32407 -16.26467 -15.67964 -15.30705 -14.55615 -14.40771 -14.29059 -13.90796 -13.42320 -13.04479 -12.94571 -12.80859 -12.15381 -11.85584 -11.71049 -11.44860 -11.13615 -10.97312 -10.90307 -10.75778 -10.51270 -10.36665 -10.17770 -9.91018 -9.83603 -9.26870 -9.07474 -8.31379 -7.70626 -5.95780 -3.97983 3.34009 3.41113 3.45622 4.09541 4.44233 4.52721 4.58031 4.79963 4.92778 5.03403 5.18048 5.27119 5.36374 5.39323 5.40218 5.43826 5.64135 5.76920 5.85015 5.92378 5.96737 6.06677 6.13069 6.21357 6.34343 6.42207 6.47439 6.56997 7.05429 7.56818 7.59613 7.79327 7.89962 8.05378 8.15049 8.49179 9.09618 9.65590 11.15820 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052953 B = 0.004383 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.645850 B = 6387.089343 C = 6748.899616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.067 3.933 13 C -0.077 4.077 14 H 0.085 0.915 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.150 4.150 19 C 0.111 3.889 20 H 0.051 0.949 21 O -0.562 6.562 22 H 0.259 0.741 23 H 0.013 0.987 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.058 0.942 27 H 0.332 0.668 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -20.679 -2.510 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.323 5.323 12 C -0.063 4.063 13 C -0.096 4.096 14 H 0.104 0.896 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.188 4.188 19 C 0.051 3.949 20 H 0.069 0.931 21 O -0.367 6.367 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.706 -20.009 -1.769 20.269 hybrid contribution 1.111 0.421 -1.020 1.566 sum 3.817 -19.589 -2.789 20.151 Atomic orbital electron populations 1.69983 1.06032 1.26423 1.50902 1.25003 0.94836 0.99203 0.95359 0.86535 0.80093 0.83802 0.77549 1.19773 1.21063 1.20972 1.21235 0.93040 0.91050 1.50547 0.92717 1.19079 0.94058 0.90499 0.97664 1.22142 0.96935 0.88569 0.98562 1.60606 1.19983 1.02211 1.49526 1.21893 0.94325 0.89788 1.00266 1.21143 0.96660 0.92981 0.98780 0.89642 1.21611 0.99020 0.97985 0.96832 1.21561 0.97905 0.94357 1.02030 1.21481 0.98319 0.98472 0.97155 1.22255 0.99960 0.97651 0.98941 1.21810 0.92406 0.94436 0.86226 0.93113 1.86598 1.57333 1.51521 1.41211 0.93085 0.96880 0.95634 0.96866 0.92381 0.84947 0.96463 0.90565 0.90586 0.92171 0.91659 0.91860 0.91941 0.92052 0.91051 0.92078 0.78168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.48 5.62 -3.82 -0.02 1.46 16 11 N -0.69 -13.22 6.50 -113.77 -0.74 -13.96 16 12 C 0.07 1.08 5.07 -3.82 -0.02 1.06 16 13 C -0.08 -1.01 2.14 -90.62 -0.19 -1.20 16 14 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.12 -1.33 4.98 -26.73 -0.13 -1.47 16 16 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 17 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 18 C -0.15 -1.33 5.54 -26.76 -0.15 -1.48 16 19 C 0.11 1.21 2.90 -26.76 -0.08 1.13 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 O -0.56 -6.53 12.56 -35.23 -0.44 -6.98 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.33 6.02 6.98 -39.29 -0.27 5.74 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 1.33 7.54 -51.93 -0.39 0.94 16 30 H 0.08 0.94 6.68 -51.93 -0.35 0.59 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.37 2.59 9.08 45.56 0.41 3.01 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -31.90 301.42 -8.45 -40.35 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.06 Total: 2.09 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.47 Total: -16.36 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.00 Total: -40.71 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.44 Total: -6.98 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.90 -8.45 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083014417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.793 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds