Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46903 * 110.99673 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46899 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47054 * 304.99730 * 13 12 11 15 15 C 1.52996 * 109.47125 * 64.99825 * 13 12 11 16 16 C 1.53003 * 109.47125 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47291 * 300.00064 * 16 15 13 18 18 C 1.52995 * 109.47066 * 59.99517 * 17 16 15 19 19 C 1.52997 * 109.46971 * 184.99686 * 13 12 11 20 20 H 1.09002 * 109.47268 * 299.99913 * 19 13 12 21 21 O 1.42896 * 109.47074 * 59.99749 * 19 13 12 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.00894 * 110.99951 * 56.04708 * 11 10 9 28 28 H 1.09003 * 109.46666 * 299.99374 * 12 11 10 29 29 H 1.08993 * 109.47307 * 59.99613 * 12 11 10 30 30 H 1.09005 * 109.47199 * 299.99364 * 15 13 12 31 31 H 1.08990 * 109.47596 * 59.99880 * 15 13 12 32 32 H 1.09002 * 109.47054 * 59.99905 * 16 15 13 33 33 H 1.09002 * 109.47326 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47588 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.46942 * 299.99909 * 17 16 15 36 36 H 1.09002 * 109.47609 * 60.00675 * 18 17 16 37 37 H 1.09006 * 109.47185 * 180.02562 * 18 17 16 38 38 H 0.96703 * 114.00253 * 179.97438 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4355 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0019 14 1 0.9421 -7.3818 0.8392 15 6 0.8505 -7.4955 -1.3100 16 6 0.0510 -8.8000 -1.3116 17 6 1.0094 -9.9858 -1.1856 18 6 1.7944 -9.8703 0.1225 19 6 2.5935 -8.5661 0.1244 20 1 3.2868 -8.5644 -0.7167 21 8 3.3267 -8.4583 1.3462 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.8748 -4.9841 -0.7827 28 1 3.0640 -6.0347 -0.8902 29 1 3.0628 -6.0348 0.8898 30 1 0.1678 -6.6504 -1.4000 31 1 1.5437 -7.4937 -2.1511 32 1 -0.6423 -8.8022 -0.4705 33 1 -0.5086 -8.8821 -2.2434 34 1 0.4399 -10.9152 -1.1872 35 1 1.7027 -9.9836 -2.0268 36 1 1.1013 -9.8726 0.9637 37 1 2.4777 -10.7149 0.2121 38 1 3.9548 -9.1788 1.4930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083014417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = -110.242338 kcal Electronic energy + Delta-G solvation = -15876.868218 eV Core-core repulsion = 13330.518545 eV Total energy + Delta-G solvation = -2546.349673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32543 -37.46675 -36.39392 -35.10544 -32.87162 -30.68989 -30.21988 -26.74998 -25.03620 -23.40966 -22.38722 -21.88202 -20.75173 -18.51917 -18.17322 -17.03962 -16.46672 -16.37795 -15.63104 -15.31060 -14.93657 -14.77734 -14.44485 -14.13686 -14.10897 -13.75291 -13.23045 -13.09757 -12.82963 -12.53811 -12.40493 -12.31355 -12.12336 -11.81973 -11.61825 -11.46321 -11.33355 -11.26794 -10.95103 -10.60556 -10.58063 -9.29877 -8.21354 -6.33298 1.39853 1.40800 1.54287 2.40140 3.11872 3.25473 3.36498 3.74750 3.82210 4.01867 4.21061 4.31609 4.34434 4.43558 4.47042 4.52671 4.56657 4.61381 4.70704 4.85857 5.00994 5.02995 5.05097 5.19968 5.23938 5.25696 5.31829 5.36783 5.42866 5.54586 5.64922 5.77167 6.12674 6.26655 6.54972 6.83562 6.97019 7.36091 8.91241 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052953 B = 0.004383 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.645850 B = 6387.089343 C = 6748.899616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.699 5.699 12 C 0.071 3.929 13 C -0.073 4.073 14 H 0.064 0.936 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.144 4.144 19 C 0.112 3.888 20 H 0.061 0.939 21 O -0.585 6.585 22 H 0.265 0.735 23 H -0.007 1.007 24 H -0.007 1.007 25 H 0.018 0.982 26 H 0.053 0.947 27 H 0.338 0.662 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -21.618 -3.200 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.331 5.331 12 C -0.058 4.058 13 C -0.092 4.092 14 H 0.082 0.918 15 C -0.153 4.153 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.182 4.182 19 C 0.053 3.947 20 H 0.079 0.921 21 O -0.393 6.393 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.012 0.988 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.157 0.843 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.904 -20.985 -2.459 21.486 hybrid contribution 0.716 0.681 -0.781 1.259 sum 4.620 -20.304 -3.240 21.074 Atomic orbital electron populations 1.70114 1.07858 1.27821 1.51386 1.25996 0.95799 1.03440 0.94490 0.85334 0.78961 0.78428 0.77904 1.18625 1.20097 1.20257 1.21637 0.93522 0.92253 1.51044 0.92227 1.18927 0.94274 0.92300 0.95066 1.21776 0.95653 0.88615 0.98507 1.60513 1.20562 1.01879 1.50104 1.21905 0.94142 0.89979 0.99805 1.21096 0.96663 0.92490 0.98952 0.91777 1.21583 0.98922 0.98713 0.96039 1.21554 0.97959 0.93807 1.02372 1.21486 0.98226 0.98359 0.97061 1.22200 0.99948 0.97123 0.98911 1.21781 0.92312 0.94213 0.86370 0.92115 1.86548 1.58152 1.53088 1.41544 0.92664 0.98857 0.98841 0.96339 0.92871 0.84298 0.95606 0.92088 0.92152 0.91357 0.92372 0.90705 0.90384 0.91133 0.92125 0.89784 0.75860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.78 5.23 29.85 0.16 1.94 16 10 C 0.08 3.81 5.62 86.31 0.49 4.29 16 11 N -0.70 -27.20 6.50 -513.87 -3.34 -30.54 16 12 C 0.07 2.27 5.07 86.30 0.44 2.71 16 13 C -0.07 -1.89 2.14 -10.79 -0.02 -1.91 16 14 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 15 C -0.11 -2.53 4.98 30.59 0.15 -2.37 16 16 C -0.12 -2.07 5.92 30.59 0.18 -1.89 16 17 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 18 C -0.14 -2.21 5.54 30.58 0.17 -2.04 16 19 C 0.11 2.26 2.90 30.58 0.09 2.35 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 O -0.59 -12.86 12.56 -148.98 -1.87 -14.73 16 22 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 23 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.34 12.53 6.98 -89.70 -0.63 11.90 16 28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 2.14 7.54 -2.39 -0.02 2.13 16 30 H 0.06 1.50 6.68 -2.38 -0.02 1.48 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.39 4.73 9.08 -74.06 -0.67 4.05 16 Total: -1.00 -68.77 301.42 -0.65 -69.42 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.28 Total: 16.40 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 2.52 Total: -29.95 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.05 Total: -88.39 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.87 Total: -14.73 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.77 -0.65 -69.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083014417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.823 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds