Wall clock time and date at job start Mon Mar 30 2020 03:21:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1
5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1
6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1
7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7
12 12 C 1.46903 * 110.99673 * 180.02562 * 11 10 9
13 13 C 1.53003 * 109.46899 * 180.02562 * 12 11 10
14 14 H 1.09002 * 109.47054 * 304.99730 * 13 12 11
15 15 C 1.52996 * 109.47125 * 64.99825 * 13 12 11
16 16 C 1.53003 * 109.47125 * 179.97438 * 15 13 12
17 17 C 1.52998 * 109.47291 * 300.00064 * 16 15 13
18 18 C 1.52995 * 109.47066 * 59.99517 * 17 16 15
19 19 C 1.52997 * 109.46971 * 184.99686 * 13 12 11
20 20 H 1.09002 * 109.47268 * 299.99913 * 19 13 12
21 21 O 1.42896 * 109.47074 * 59.99749 * 19 13 12
22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7
26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7
27 27 H 1.00894 * 110.99951 * 56.04708 * 11 10 9
28 28 H 1.09003 * 109.46666 * 299.99374 * 12 11 10
29 29 H 1.08993 * 109.47307 * 59.99613 * 12 11 10
30 30 H 1.09005 * 109.47199 * 299.99364 * 15 13 12
31 31 H 1.08990 * 109.47596 * 59.99880 * 15 13 12
32 32 H 1.09002 * 109.47054 * 59.99905 * 16 15 13
33 33 H 1.09002 * 109.47326 * 179.97438 * 16 15 13
34 34 H 1.08995 * 109.47588 * 180.02562 * 17 16 15
35 35 H 1.09002 * 109.46942 * 299.99909 * 17 16 15
36 36 H 1.09002 * 109.47609 * 60.00675 * 18 17 16
37 37 H 1.09006 * 109.47185 * 180.02562 * 18 17 16
38 38 H 0.96703 * 114.00253 * 179.97438 * 21 19 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8904 2.3964 1.2126
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 7 1.5109 -4.9342 -0.0012
12 6 2.4355 -6.0758 -0.0006
13 6 1.6354 -7.3800 -0.0019
14 1 0.9421 -7.3818 0.8392
15 6 0.8505 -7.4955 -1.3100
16 6 0.0510 -8.8000 -1.3116
17 6 1.0094 -9.9858 -1.1856
18 6 1.7944 -9.8703 0.1225
19 6 2.5935 -8.5661 0.1244
20 1 3.2868 -8.5644 -0.7167
21 8 3.3267 -8.4583 1.3462
22 1 -0.4851 0.8400 0.0004
23 1 0.6242 -2.5567 -0.8904
24 1 0.6248 -2.5571 0.8896
25 1 2.8721 -3.6042 -0.8905
26 1 2.8721 -3.6043 0.8895
27 1 0.8748 -4.9841 -0.7827
28 1 3.0640 -6.0347 -0.8902
29 1 3.0628 -6.0348 0.8898
30 1 0.1678 -6.6504 -1.4000
31 1 1.5437 -7.4937 -2.1511
32 1 -0.6423 -8.8022 -0.4705
33 1 -0.5086 -8.8821 -2.2434
34 1 0.4399 -10.9152 -1.1872
35 1 1.7027 -9.9836 -2.0268
36 1 1.1013 -9.8726 0.9637
37 1 2.4777 -10.7149 0.2121
38 1 3.9548 -9.1788 1.4930
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000083014417.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:59
Heat of formation + Delta-G solvation = -110.242338 kcal
Electronic energy + Delta-G solvation = -15876.868218 eV
Core-core repulsion = 13330.518545 eV
Total energy + Delta-G solvation = -2546.349673 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.32543 -37.46675 -36.39392 -35.10544 -32.87162 -30.68989 -30.21988 -26.74998
-25.03620 -23.40966 -22.38722 -21.88202 -20.75173 -18.51917 -18.17322 -17.03962
-16.46672 -16.37795 -15.63104 -15.31060 -14.93657 -14.77734 -14.44485 -14.13686
-14.10897 -13.75291 -13.23045 -13.09757 -12.82963 -12.53811 -12.40493 -12.31355
-12.12336 -11.81973 -11.61825 -11.46321 -11.33355 -11.26794 -10.95103 -10.60556
-10.58063 -9.29877 -8.21354 -6.33298 1.39853 1.40800 1.54287 2.40140
3.11872 3.25473 3.36498 3.74750 3.82210 4.01867 4.21061 4.31609
4.34434 4.43558 4.47042 4.52671 4.56657 4.61381 4.70704 4.85857
5.00994 5.02995 5.05097 5.19968 5.23938 5.25696 5.31829 5.36783
5.42866 5.54586 5.64922 5.77167 6.12674 6.26655 6.54972 6.83562
6.97019 7.36091 8.91241
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.052953 B = 0.004383 C = 0.004148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 528.645850 B = 6387.089343 C = 6748.899616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.001 3.999
3 Si 0.970 3.030
4 H -0.262 1.262
5 H -0.275 1.275
6 H -0.277 1.277
7 C -0.546 4.546
8 H 0.059 0.941
9 C 0.032 3.968
10 C 0.083 3.917
11 N -0.699 5.699
12 C 0.071 3.929
13 C -0.073 4.073
14 H 0.064 0.936
15 C -0.115 4.115
16 C -0.119 4.119
17 C -0.114 4.114
18 C -0.144 4.144
19 C 0.112 3.888
20 H 0.061 0.939
21 O -0.585 6.585
22 H 0.265 0.735
23 H -0.007 1.007
24 H -0.007 1.007
25 H 0.018 0.982
26 H 0.053 0.947
27 H 0.338 0.662
28 H 0.026 0.974
29 H 0.061 0.939
30 H 0.060 0.940
31 H 0.068 0.932
32 H 0.057 0.943
33 H 0.074 0.926
34 H 0.078 0.922
35 H 0.070 0.930
36 H 0.060 0.940
37 H 0.084 0.916
38 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.481 -21.618 -3.200 22.309
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.197 4.197
3 Si 0.794 3.206
4 H -0.186 1.186
5 H -0.201 1.201
6 H -0.203 1.203
7 C -0.585 4.585
8 H 0.078 0.922
9 C -0.006 4.006
10 C -0.046 4.046
11 N -0.331 5.331
12 C -0.058 4.058
13 C -0.092 4.092
14 H 0.082 0.918
15 C -0.153 4.153
16 C -0.157 4.157
17 C -0.151 4.151
18 C -0.182 4.182
19 C 0.053 3.947
20 H 0.079 0.921
21 O -0.393 6.393
22 H 0.073 0.927
23 H 0.011 0.989
24 H 0.012 0.988
25 H 0.037 0.963
26 H 0.071 0.929
27 H 0.157 0.843
28 H 0.044 0.956
29 H 0.079 0.921
30 H 0.078 0.922
31 H 0.086 0.914
32 H 0.076 0.924
33 H 0.093 0.907
34 H 0.096 0.904
35 H 0.089 0.911
36 H 0.079 0.921
37 H 0.102 0.898
38 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges 3.904 -20.985 -2.459 21.486
hybrid contribution 0.716 0.681 -0.781 1.259
sum 4.620 -20.304 -3.240 21.074
Atomic orbital electron populations
1.70114 1.07858 1.27821 1.51386 1.25996 0.95799 1.03440 0.94490
0.85334 0.78961 0.78428 0.77904 1.18625 1.20097 1.20257 1.21637
0.93522 0.92253 1.51044 0.92227 1.18927 0.94274 0.92300 0.95066
1.21776 0.95653 0.88615 0.98507 1.60513 1.20562 1.01879 1.50104
1.21905 0.94142 0.89979 0.99805 1.21096 0.96663 0.92490 0.98952
0.91777 1.21583 0.98922 0.98713 0.96039 1.21554 0.97959 0.93807
1.02372 1.21486 0.98226 0.98359 0.97061 1.22200 0.99948 0.97123
0.98911 1.21781 0.92312 0.94213 0.86370 0.92115 1.86548 1.58152
1.53088 1.41544 0.92664 0.98857 0.98841 0.96339 0.92871 0.84298
0.95606 0.92088 0.92152 0.91357 0.92372 0.90705 0.90384 0.91133
0.92125 0.89784 0.75860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16
2 C 0.00 0.04 5.46 84.65 0.46 0.50 16
3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16
4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16
5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16
6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
7 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16
8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16
9 C 0.03 1.78 5.23 29.85 0.16 1.94 16
10 C 0.08 3.81 5.62 86.31 0.49 4.29 16
11 N -0.70 -27.20 6.50 -513.87 -3.34 -30.54 16
12 C 0.07 2.27 5.07 86.30 0.44 2.71 16
13 C -0.07 -1.89 2.14 -10.79 -0.02 -1.91 16
14 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
15 C -0.11 -2.53 4.98 30.59 0.15 -2.37 16
16 C -0.12 -2.07 5.92 30.59 0.18 -1.89 16
17 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16
18 C -0.14 -2.21 5.54 30.58 0.17 -2.04 16
19 C 0.11 2.26 2.90 30.58 0.09 2.35 16
20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
21 O -0.59 -12.86 12.56 -148.98 -1.87 -14.73 16
22 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16
23 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16
24 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16
25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16
26 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16
27 H 0.34 12.53 6.98 -89.70 -0.63 11.90 16
28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16
29 H 0.06 2.14 7.54 -2.39 -0.02 2.13 16
30 H 0.06 1.50 6.68 -2.38 -0.02 1.48 16
31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16
38 H 0.39 4.73 9.08 -74.06 -0.67 4.05 16
Total: -1.00 -68.77 301.42 -0.65 -69.42
By element:
Atomic # 1 Polarization: 16.68 SS G_CDS: -0.28 Total: 16.40 kcal
Atomic # 6 Polarization: -32.47 SS G_CDS: 2.52 Total: -29.95 kcal
Atomic # 7 Polarization: -85.33 SS G_CDS: -3.05 Total: -88.39 kcal
Atomic # 8 Polarization: -12.86 SS G_CDS: -1.87 Total: -14.73 kcal
Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal
Total: -68.77 -0.65 -69.42 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083014417.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.823 kcal
(2) G-P(sol) polarization free energy of solvation -68.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.419 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.242 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds