Wall clock time and date at job start Mon Mar 30 2020 03:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48493 * 109.47531 * 240.00441 * 3 2 1 5 5 H 1.48498 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47163 * 120.00164 * 3 2 1 7 7 C 1.37876 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00168 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99890 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99984 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47044 * 185.33188 * 11 10 9 13 13 O 1.42894 * 108.87330 * 299.42489 * 12 11 10 14 14 C 1.54245 * 108.89407 * 180.82391 * 12 11 10 15 15 C 1.50550 * 108.48517 * 159.18009 * 14 12 11 16 16 C 1.54069 * 112.41752 * 94.26421 * 15 14 12 17 17 C 1.54067 * 112.81452 * 318.28229 * 16 15 14 18 18 C 1.50476 * 112.49360 * 318.28148 * 17 16 15 19 19 C 1.45536 * 108.89547 * 58.03266 * 12 11 10 20 20 H 0.97004 * 120.00455 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46880 * 60.00397 * 9 7 2 22 22 H 1.09003 * 109.47248 * 300.00546 * 9 7 2 23 23 H 1.00903 * 110.99819 * 303.95491 * 10 9 7 24 24 H 1.08996 * 109.47074 * 305.33418 * 11 10 9 25 25 H 1.09004 * 109.47292 * 65.32853 * 11 10 9 26 26 H 0.96700 * 114.00059 * 300.00128 * 13 12 11 27 27 H 1.09003 * 109.62876 * 278.97690 * 14 12 11 28 28 H 1.08998 * 109.62786 * 39.54773 * 14 12 11 29 29 H 1.08999 * 108.92201 * 333.50677 * 15 14 12 30 30 H 1.09002 * 108.91921 * 215.01957 * 15 14 12 31 31 H 1.08994 * 108.81331 * 197.41896 * 16 15 14 32 32 H 1.08997 * 108.72460 * 79.08383 * 16 15 14 33 33 H 1.09000 * 108.87406 * 197.51172 * 17 16 15 34 34 H 1.08998 * 108.87774 * 79.06314 * 17 16 15 35 35 H 1.09002 * 109.63266 * 334.44450 * 18 17 16 36 36 H 1.09001 * 109.62700 * 213.86182 * 18 17 16 37 37 H 1.09000 * 108.89686 * 303.43678 * 19 12 11 38 38 H 1.09005 * 108.89768 * 62.03283 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5249 -6.0400 0.1329 13 8 3.4218 -5.9886 -0.9783 14 6 1.7779 -7.3893 0.1099 15 6 2.7549 -8.4693 -0.2718 16 6 3.3753 -9.1614 0.9570 17 6 3.7491 -8.1702 2.0756 18 6 4.3838 -6.9140 1.5433 19 6 3.2834 -5.8487 1.3602 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8406 -3.5485 -0.7819 24 1 0.8095 -4.9433 0.8369 25 1 0.9555 -5.0217 -0.9352 26 1 2.9894 -6.0868 -1.8376 27 1 1.3673 -7.5974 1.0980 28 1 0.9725 -7.3495 -0.6234 29 1 3.5533 -8.0287 -0.8689 30 1 2.2381 -9.2166 -0.8740 31 1 4.2735 -9.6938 0.6443 32 1 2.6592 -9.8825 1.3510 33 1 4.4465 -8.6556 2.7583 34 1 2.8472 -7.9036 2.6265 35 1 4.8565 -7.1210 0.5831 36 1 5.1295 -6.5521 2.2512 37 1 3.7471 -4.8625 1.3385 38 1 2.6008 -5.8990 2.2085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083470879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:35 Heat of formation + Delta-G solvation = -94.543618 kcal Electronic energy + Delta-G solvation = -16530.504629 eV Core-core repulsion = 13984.835703 eV Total energy + Delta-G solvation = -2545.668926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97372 -37.09870 -36.01598 -34.46252 -32.99857 -32.18008 -29.13369 -26.56359 -25.71193 -23.98181 -22.97854 -21.06953 -20.03755 -18.71148 -17.43947 -17.17414 -16.56159 -16.20216 -15.76114 -15.36151 -15.14383 -14.50706 -14.26155 -14.19153 -13.80909 -13.47730 -13.17935 -12.95173 -12.72580 -12.62554 -12.50183 -12.20969 -12.05503 -11.90984 -11.47254 -11.37469 -11.21150 -11.11876 -11.02268 -10.66739 -10.50290 -9.06849 -8.23843 -6.35322 1.40314 1.44098 1.52187 2.39288 3.09264 3.31272 3.61329 3.80043 3.92096 4.04507 4.22140 4.32002 4.34157 4.46154 4.49913 4.67208 4.74316 4.77453 4.94075 5.02214 5.05583 5.11269 5.17827 5.24438 5.34719 5.38241 5.42821 5.47492 5.58386 5.60378 5.65192 5.71291 6.00816 6.44417 6.71339 6.87171 6.95453 7.35905 8.87584 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053387 B = 0.005326 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.348547 B = 5256.000823 C = 5436.912897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.679 5.679 11 C 0.029 3.971 12 C 0.159 3.841 13 O -0.560 6.560 14 C -0.137 4.137 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.104 4.104 20 H 0.266 0.734 21 H -0.042 1.042 22 H -0.003 1.003 23 H 0.337 0.663 24 H 0.059 0.941 25 H 0.022 0.978 26 H 0.379 0.621 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -17.659 0.292 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.081 3.919 10 N -0.309 5.309 11 C -0.101 4.101 12 C 0.119 3.881 13 O -0.366 6.366 14 C -0.175 4.175 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.141 4.141 20 H 0.074 0.926 21 H -0.024 1.024 22 H 0.015 0.985 23 H 0.154 0.846 24 H 0.078 0.922 25 H 0.040 0.960 26 H 0.227 0.773 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.212 -17.463 1.461 18.592 hybrid contribution -0.951 1.070 -1.258 1.906 sum 5.261 -16.393 0.202 17.217 Atomic orbital electron populations 1.70081 1.07821 1.28106 1.51467 1.25956 0.95792 1.03402 0.94479 0.85373 0.78111 0.77566 0.79168 1.19079 1.20623 1.19378 1.21507 0.93724 0.91501 1.50759 0.91954 1.19200 0.90645 0.89147 0.92914 1.60441 1.19927 1.01096 1.49483 1.22795 0.96531 0.91191 0.99559 1.19836 0.88564 0.92117 0.87615 1.86591 1.37548 1.95575 1.16927 1.21950 0.98420 0.94224 1.02913 1.21295 0.99152 0.97063 0.98397 1.21877 1.00492 0.97528 0.95080 1.21366 1.00429 0.95685 0.98085 1.21186 0.97137 0.94727 1.01411 1.20351 0.98128 1.00154 0.95481 0.92572 1.02411 0.98481 0.84584 0.92235 0.95961 0.77258 0.90841 0.91306 0.90638 0.91552 0.91904 0.91875 0.91624 0.92635 0.91360 0.92407 0.92460 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.54 -31.45 9.32 25.60 0.24 -31.22 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.53 5.43 85.56 0.46 11.99 16 10 N -0.68 -30.08 5.38 -517.93 -2.79 -32.86 16 11 C 0.03 1.05 4.65 86.30 0.40 1.45 16 12 C 0.16 4.43 0.66 -12.65 -0.01 4.42 16 13 O -0.56 -15.06 9.41 -148.98 -1.40 -16.46 16 14 C -0.14 -2.99 4.82 30.22 0.15 -2.84 16 15 C -0.12 -2.28 5.25 30.16 0.16 -2.12 16 16 C -0.11 -1.96 5.85 31.32 0.18 -1.78 16 17 C -0.12 -2.34 5.31 30.14 0.16 -2.18 16 18 C -0.11 -2.60 5.57 30.20 0.17 -2.43 16 19 C -0.10 -3.07 4.07 28.74 0.12 -2.95 16 20 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 21 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.34 14.58 8.24 -89.69 -0.74 13.84 16 24 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 25 H 0.02 0.77 8.11 -2.39 -0.02 0.75 16 26 H 0.38 7.92 9.02 -74.06 -0.67 7.26 16 27 H 0.07 1.59 6.97 -2.39 -0.02 1.58 16 28 H 0.07 1.42 7.96 -2.39 -0.02 1.40 16 29 H 0.08 1.56 5.46 -2.39 -0.01 1.54 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.14 6.62 -2.39 -0.02 1.12 16 35 H 0.07 1.74 6.24 -2.39 -0.01 1.72 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 2.08 7.20 -2.39 -0.02 2.06 16 38 H 0.06 1.88 7.46 -2.38 -0.02 1.86 16 Total: -1.00 -64.80 289.84 0.25 -64.56 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.37 Total: 21.89 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 2.49 Total: -27.09 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -2.50 Total: -89.92 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.40 Total: -16.46 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.80 0.25 -64.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083470879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.987 kcal (2) G-P(sol) polarization free energy of solvation -64.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds