Wall clock time and date at job start Mon Mar 30 2020 03:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.50747 * 2 1 4 4 C 1.53056 * 109.49010 * 239.94170 * 2 1 3 5 5 N 1.46953 * 109.36571 * 181.63596 * 4 2 1 6 6 C 1.46899 * 111.00236 * 183.19295 * 5 4 2 7 7 C 1.50695 * 109.47381 * 169.99715 * 6 5 4 8 8 O 1.21299 * 119.99946 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00003 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99648 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00132 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99626 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00115 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99770 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47437 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47267 * 120.00198 * 14 12 10 17 17 H 1.48509 * 109.46787 * 239.99856 * 14 12 10 18 18 C 1.46954 * 110.88290 * 59.31944 * 5 4 2 19 19 C 1.53056 * 109.36346 * 300.68189 * 18 5 4 20 20 N 1.46956 * 109.36524 * 58.40368 * 19 18 5 21 21 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 22 22 H 1.08991 * 109.47174 * 300.05573 * 1 2 3 23 23 H 1.09008 * 109.46659 * 60.05722 * 1 2 3 24 24 H 1.08997 * 109.49056 * 301.60461 * 4 2 1 25 25 H 1.09004 * 109.48435 * 61.66600 * 4 2 1 26 26 H 1.09001 * 109.46672 * 289.99846 * 6 5 4 27 27 H 1.08996 * 109.46891 * 49.99582 * 6 5 4 28 28 H 0.96996 * 120.00224 * 0.02562 * 9 7 6 29 29 H 0.97002 * 120.00292 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.48555 * 60.64731 * 18 5 4 31 31 H 1.08998 * 109.48990 * 180.71711 * 18 5 4 32 32 H 1.09004 * 109.48435 * 178.36797 * 19 18 5 33 33 H 1.09000 * 109.48978 * 298.40932 * 19 18 5 34 34 H 1.00897 * 110.99884 * 176.81242 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7227 -1.2488 5 7 3.5097 -0.7555 -1.2264 6 6 4.0412 -1.3753 -2.4475 7 6 5.5334 -1.1729 -2.5051 8 8 6.0985 -0.5710 -1.6165 9 7 6.2400 -1.6607 -3.5440 10 6 7.5975 -1.4761 -3.5966 11 1 8.1005 -0.9395 -2.8058 12 6 8.3259 -1.9785 -4.6679 13 7 7.7136 -2.6302 -5.6309 14 14 10.1756 -1.7276 -4.7393 15 1 10.6186 -0.9675 -3.5430 16 1 10.8536 -3.0485 -4.7661 17 1 10.5249 -0.9669 -5.9659 18 6 3.9999 -1.4492 -0.0273 19 6 3.4892 -0.7265 1.2215 20 7 2.0202 -0.6939 1.1992 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5147 0.8894 23 1 -0.3633 0.5130 -0.8906 24 1 1.6544 -1.7418 -1.2627 25 1 1.7022 -0.1930 -2.1394 26 1 3.8193 -2.4425 -2.4394 27 1 3.5781 -0.9145 -3.3200 28 1 5.7880 -2.1417 -4.2548 29 1 8.2221 -2.9813 -6.3786 30 1 3.6359 -2.4766 -0.0273 31 1 5.0899 -1.4492 -0.0272 32 1 3.8277 -1.2562 2.1121 33 1 3.8758 0.2925 1.2356 34 1 1.6552 -0.2680 2.0379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083814645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:30 Heat of formation + Delta-G solvation = -29.157621 kcal Electronic energy + Delta-G solvation = -15999.062047 eV Core-core repulsion = 13352.688128 eV Total energy + Delta-G solvation = -2646.373919 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23259 -37.72938 -34.51258 -33.65352 -32.10937 -31.19490 -28.04741 -27.04865 -24.87843 -23.21713 -21.95700 -19.52323 -19.11123 -17.81624 -16.40668 -15.97192 -14.96680 -14.86080 -14.67060 -14.46226 -13.90276 -13.81072 -13.39756 -13.23942 -12.43869 -12.21266 -12.00286 -11.60021 -11.45665 -11.33794 -11.07046 -10.93603 -10.62600 -10.52581 -10.32573 -10.20132 -9.46262 -8.51815 -8.32482 -7.95104 -7.78276 -6.39730 -3.80401 3.17659 3.28035 3.35323 3.92977 4.03289 4.20903 4.27571 4.90544 5.05257 5.16661 5.26663 5.28673 5.45741 5.57675 5.61578 5.70137 5.74681 5.83775 5.89770 5.96450 5.98416 6.17431 6.29068 6.34359 6.48262 7.03362 7.26534 7.46741 7.48809 7.57403 8.09168 8.64407 9.20428 9.57143 10.09086 10.78213 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.063889 B = 0.005401 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.158097 B = 5183.217628 C = 5469.979810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.046 0.954 4 C 0.061 3.939 5 N -0.518 5.518 6 C 0.046 3.954 7 C 0.445 3.555 8 O -0.578 6.578 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.054 3.946 19 C 0.063 3.937 20 N -0.690 5.690 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.392 0.608 29 H 0.271 0.729 30 H 0.029 0.971 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 1.921 7.782 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.064 0.936 4 C -0.068 4.068 5 N -0.243 5.243 6 C -0.085 4.085 7 C 0.230 3.770 8 O -0.462 6.462 9 N -0.202 5.202 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.074 4.074 19 C -0.067 4.067 20 N -0.322 5.322 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.225 0.775 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.491 2.098 7.938 14.123 hybrid contribution 0.525 -0.153 -0.473 0.723 sum -10.966 1.945 7.465 13.408 Atomic orbital electron populations 1.21781 0.94341 1.02395 1.01598 1.21504 0.94490 0.96040 0.90500 0.93573 1.22205 0.88118 0.99196 0.97237 1.61727 1.06526 1.54247 1.01783 1.21835 0.95771 0.97602 0.93281 1.19757 0.87811 0.84775 0.84627 1.90476 1.71281 1.45280 1.39202 1.41880 1.08035 1.49587 1.20684 1.19751 0.82237 1.33505 1.07230 0.87876 1.25256 1.00621 0.96720 0.95379 1.69622 1.36748 1.37294 1.10733 0.85806 0.82233 0.77996 0.78336 1.19235 1.20784 1.20771 1.22330 1.02511 0.94226 0.88324 1.21970 0.86712 0.99873 0.98119 1.60618 1.09162 1.57941 1.04441 0.91929 0.92738 0.92055 0.94466 0.90685 0.93464 0.89425 0.77495 0.91954 0.95272 0.87636 0.90657 0.94130 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.46 37.16 0.35 -1.01 16 2 C 0.08 1.06 3.20 -67.65 -0.22 0.85 16 3 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.06 0.87 4.89 -3.77 -0.02 0.86 16 5 N -0.52 -9.26 4.44 -235.91 -1.05 -10.31 16 6 C 0.05 0.87 5.45 -4.98 -0.03 0.85 16 7 C 0.44 10.72 7.48 -10.99 -0.08 10.64 16 8 O -0.58 -15.76 13.92 5.54 0.08 -15.68 16 9 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 14 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 C 0.05 0.95 5.26 -3.77 -0.02 0.93 16 19 C 0.06 0.91 6.72 -3.76 -0.03 0.88 16 20 N -0.69 -8.71 6.55 -106.58 -0.70 -9.41 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 26 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 28 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 2.18 5.85 -51.93 -0.30 1.88 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.34 3.49 8.83 -39.29 -0.35 3.14 16 LS Contribution 279.15 15.07 4.21 4.21 Total: -1.00 -30.86 279.15 -7.22 -38.08 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.12 Total: 9.64 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.28 Total: 5.95 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -1.08 Total: -58.37 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.86 -7.22 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.926 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds