Wall clock time and date at job start Mon Mar 30 2020 03:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.50747 * 2 1 4 4 C 1.53056 * 109.49010 * 239.94170 * 2 1 3 5 5 N 1.46953 * 109.36571 * 181.63596 * 4 2 1 6 6 C 1.46899 * 111.00236 * 183.19295 * 5 4 2 7 7 C 1.50695 * 109.47381 * 169.99715 * 6 5 4 8 8 O 1.21299 * 119.99946 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00003 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99648 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00132 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99626 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00115 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99770 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47437 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47267 * 120.00198 * 14 12 10 17 17 H 1.48509 * 109.46787 * 239.99856 * 14 12 10 18 18 C 1.46954 * 110.88290 * 59.31944 * 5 4 2 19 19 C 1.53056 * 109.36346 * 300.68189 * 18 5 4 20 20 N 1.46956 * 109.36524 * 58.40368 * 19 18 5 21 21 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 22 22 H 1.08991 * 109.47174 * 300.05573 * 1 2 3 23 23 H 1.09008 * 109.46659 * 60.05722 * 1 2 3 24 24 H 1.08997 * 109.49056 * 301.60461 * 4 2 1 25 25 H 1.09004 * 109.48435 * 61.66600 * 4 2 1 26 26 H 1.09001 * 109.46672 * 289.99846 * 6 5 4 27 27 H 1.08996 * 109.46891 * 49.99582 * 6 5 4 28 28 H 0.96996 * 120.00224 * 0.02562 * 9 7 6 29 29 H 0.97002 * 120.00292 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.48555 * 60.64731 * 18 5 4 31 31 H 1.08998 * 109.48990 * 180.71711 * 18 5 4 32 32 H 1.09004 * 109.48435 * 178.36797 * 19 18 5 33 33 H 1.09000 * 109.48978 * 298.40932 * 19 18 5 34 34 H 1.00897 * 110.99884 * 176.81242 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7227 -1.2488 5 7 3.5097 -0.7555 -1.2264 6 6 4.0412 -1.3753 -2.4475 7 6 5.5334 -1.1729 -2.5051 8 8 6.0985 -0.5710 -1.6165 9 7 6.2400 -1.6607 -3.5440 10 6 7.5975 -1.4761 -3.5966 11 1 8.1005 -0.9395 -2.8058 12 6 8.3259 -1.9785 -4.6679 13 7 7.7136 -2.6302 -5.6309 14 14 10.1756 -1.7276 -4.7393 15 1 10.6186 -0.9675 -3.5430 16 1 10.8536 -3.0485 -4.7661 17 1 10.5249 -0.9669 -5.9659 18 6 3.9999 -1.4492 -0.0273 19 6 3.4892 -0.7265 1.2215 20 7 2.0202 -0.6939 1.1992 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5147 0.8894 23 1 -0.3633 0.5130 -0.8906 24 1 1.6544 -1.7418 -1.2627 25 1 1.7022 -0.1930 -2.1394 26 1 3.8193 -2.4425 -2.4394 27 1 3.5781 -0.9145 -3.3200 28 1 5.7880 -2.1417 -4.2548 29 1 8.2221 -2.9813 -6.3786 30 1 3.6359 -2.4766 -0.0273 31 1 5.0899 -1.4492 -0.0272 32 1 3.8277 -1.2562 2.1121 33 1 3.8758 0.2925 1.2356 34 1 1.6552 -0.2680 2.0379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083814645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:30 Heat of formation + Delta-G solvation = -54.252243 kcal Electronic energy + Delta-G solvation = -16000.150232 eV Core-core repulsion = 13352.688128 eV Total energy + Delta-G solvation = -2647.462104 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.71051 -39.37428 -36.15389 -35.36473 -33.33844 -33.10162 -29.57635 -28.11487 -26.71658 -24.61201 -23.15930 -20.99006 -20.67951 -19.86461 -17.83909 -17.45914 -16.62611 -16.32952 -16.09851 -15.92276 -15.41457 -15.32934 -14.97205 -14.58602 -13.98238 -13.50867 -13.34765 -13.06419 -12.87066 -12.71277 -12.59836 -12.41533 -12.11740 -12.00507 -11.91078 -11.67004 -11.45349 -10.29403 -10.00829 -9.50604 -9.21048 -8.46922 -5.95738 1.36380 1.41571 1.55952 2.03855 2.28134 2.73943 3.19372 3.21332 3.37311 3.88241 4.04752 4.17213 4.31537 4.32237 4.39935 4.46746 4.53022 4.60480 4.71060 4.81731 4.87663 4.96325 5.11626 5.16866 5.37486 5.40878 5.85629 5.92556 6.06183 6.22337 6.50866 6.60375 7.12533 7.55502 8.11301 8.70877 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.063889 B = 0.005401 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.158097 B = 5183.217628 C = 5469.979810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.084 3.916 3 H 0.034 0.966 4 C 0.060 3.940 5 N -0.537 5.537 6 C 0.058 3.942 7 C 0.442 3.558 8 O -0.614 6.614 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.994 3.006 15 H -0.274 1.274 16 H -0.270 1.270 17 H -0.270 1.270 18 C 0.056 3.944 19 C 0.071 3.929 20 N -0.686 5.686 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.396 0.604 29 H 0.278 0.722 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 1.870 7.794 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.052 0.948 4 C -0.068 4.068 5 N -0.262 5.262 6 C -0.073 4.073 7 C 0.229 3.771 8 O -0.500 6.500 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.072 4.072 19 C -0.059 4.059 20 N -0.319 5.319 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.230 0.770 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.799 2.042 7.950 15.205 hybrid contribution 0.877 -0.131 -0.453 0.995 sum -11.923 1.911 7.497 14.213 Atomic orbital electron populations 1.21715 0.91610 1.02854 1.02990 1.21567 0.96513 0.94932 0.89610 0.94755 1.22352 0.85526 0.99956 0.98978 1.61720 1.08956 1.54334 1.01214 1.21718 0.91688 0.98990 0.94932 1.20728 0.90040 0.83088 0.83250 1.90455 1.72778 1.46526 1.40281 1.41941 1.07573 1.50219 1.21407 1.19700 0.83692 1.35136 1.07647 0.90332 1.26041 1.04836 0.95833 0.94523 1.69680 1.38393 1.37193 1.10980 0.84862 0.76830 0.78307 0.78268 1.19821 1.19552 1.19571 1.22199 1.00283 0.94913 0.89834 1.21834 0.88084 0.98754 0.97248 1.60596 1.07631 1.58250 1.05429 0.91861 0.91246 0.90865 0.94021 0.89242 0.91848 0.87150 0.77046 0.91291 0.95072 0.91538 0.88948 0.95666 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.46 71.98 0.68 -1.44 16 2 C 0.08 1.91 3.20 44.92 0.14 2.06 16 3 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 4 C 0.06 1.58 4.89 86.31 0.42 2.00 16 5 N -0.54 -18.83 4.44 -900.29 -4.00 -22.83 16 6 C 0.06 2.14 5.45 85.56 0.47 2.60 16 7 C 0.44 21.74 7.48 87.66 0.66 22.39 16 8 O -0.61 -34.72 13.92 -3.09 -0.04 -34.77 16 9 N -0.57 -30.17 5.29 -306.98 -1.62 -31.79 16 10 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 11 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 14 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 C 0.06 1.97 5.26 86.31 0.45 2.42 16 19 C 0.07 1.99 6.72 86.31 0.58 2.57 16 20 N -0.69 -15.89 6.55 -491.10 -3.21 -19.10 16 21 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 2.10 8.07 -2.38 -0.02 2.08 16 26 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 27 H 0.11 3.57 8.03 -2.39 -0.02 3.55 16 28 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 29 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 2.86 5.85 -2.39 -0.01 2.85 16 32 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.35 6.40 8.83 -89.70 -0.79 5.61 16 Total: -1.00 -66.99 279.15 -2.31 -69.30 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.42 Total: 29.74 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 4.68 Total: 14.04 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -8.56 Total: -123.72 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.04 Total: -34.77 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.99 -2.31 -69.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.052 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds