Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.47094 * 2 1 4 4 C 1.50693 * 109.47189 * 120.00213 * 2 1 3 5 5 H 1.07996 * 120.00695 * 120.00091 * 4 2 1 6 6 C 1.37883 * 119.99614 * 299.99748 * 4 2 1 7 7 N 1.31512 * 120.00311 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99675 * 179.97438 * 6 4 2 9 9 H 1.48512 * 109.47036 * 90.00328 * 8 6 4 10 10 H 1.48500 * 109.47417 * 209.99812 * 8 6 4 11 11 H 1.48500 * 109.47438 * 330.00338 * 8 6 4 12 12 N 1.46900 * 109.47271 * 240.00330 * 2 1 3 13 13 C 1.46958 * 110.99764 * 305.43782 * 12 2 1 14 14 C 1.53051 * 109.36698 * 183.18909 * 13 12 2 15 15 N 1.46961 * 109.36201 * 301.60010 * 14 13 12 16 16 C 1.46958 * 110.88146 * 59.31840 * 15 14 13 17 17 C 1.46958 * 111.00229 * 69.23390 * 12 2 1 18 18 H 1.08998 * 109.49006 * 296.78458 * 17 12 2 19 19 C 1.50698 * 109.48602 * 56.82306 * 17 12 2 20 20 N 1.34776 * 119.99969 * 208.28538 * 19 17 12 21 21 O 1.21280 * 120.00097 * 28.29461 * 19 17 12 22 22 H 1.09003 * 109.46910 * 59.99568 * 1 2 3 23 23 H 1.08997 * 109.47631 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47079 * 300.00491 * 1 2 3 25 25 H 0.97003 * 120.00035 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.49010 * 303.15747 * 13 12 2 27 27 H 1.09004 * 109.48955 * 63.22085 * 13 12 2 28 28 H 1.08998 * 109.48977 * 181.63258 * 14 13 12 29 29 H 1.09001 * 109.50446 * 61.57233 * 14 13 12 30 30 H 1.00897 * 110.99610 * 183.18859 * 15 14 13 31 31 H 1.08998 * 109.48562 * 180.71653 * 16 15 14 32 32 H 1.08995 * 109.50409 * 60.65996 * 16 15 14 33 33 H 0.96994 * 120.00381 * 0.02562 * 20 19 17 34 34 H 0.97004 * 120.00328 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7119 12 7 2.0197 -0.6924 -1.1995 13 6 1.4452 -2.0413 -1.3002 14 6 2.0396 -2.7566 -2.5158 15 7 1.7566 -1.9748 -3.7276 16 6 2.3311 -0.6259 -3.6269 17 6 1.7367 0.0892 -2.4113 18 1 0.6584 0.1864 -2.5378 19 6 2.3530 1.4583 -2.2818 20 7 1.8035 2.5082 -2.9239 21 8 3.3436 1.6154 -1.5999 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7081 1.1609 3.4844 26 1 1.6788 -2.6045 -0.3968 27 1 0.3636 -1.9684 -1.4142 28 1 1.5934 -3.7466 -2.6093 29 1 3.1179 -2.8540 -2.3895 30 1 2.0929 -2.4505 -4.5514 31 1 2.0973 -0.0628 -4.5303 32 1 3.4127 -0.6986 -3.5132 33 1 1.0112 2.3827 -3.4691 34 1 2.2004 3.3894 -2.8409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084024509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = -20.462093 kcal Electronic energy + Delta-G solvation = -16961.095008 eV Core-core repulsion = 14315.098155 eV Total energy + Delta-G solvation = -2645.996853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.71857 -37.47230 -34.86613 -33.19105 -32.23063 -30.55553 -28.70410 -25.32452 -24.75982 -23.80443 -20.66940 -20.55664 -18.62437 -16.98335 -16.42414 -16.18406 -15.72849 -14.71466 -14.66331 -14.00940 -13.85089 -13.51723 -13.21526 -13.02246 -12.47918 -12.08901 -11.67409 -11.10418 -10.97984 -10.90493 -10.63909 -10.58213 -10.34035 -9.95806 -9.70742 -9.24286 -9.19103 -8.78865 -8.31244 -8.27331 -7.14270 -5.93225 -3.95377 3.17678 3.36994 3.42716 3.45685 3.85412 4.45620 4.50488 4.91134 5.28781 5.38789 5.40532 5.51555 5.65192 5.75512 5.92513 6.04634 6.12571 6.52902 6.62768 6.78051 6.86794 7.11033 7.12188 7.18153 7.44946 7.50556 7.72245 7.73496 7.90154 8.20916 8.40584 8.61282 8.83182 9.08612 9.68041 11.14512 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.010126 C = 0.008454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.103172 B = 2764.599401 C = 3311.405915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.206 3.794 3 H 0.051 0.949 4 C -0.492 4.492 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.510 5.510 13 C 0.064 3.936 14 C 0.054 3.946 15 N -0.689 5.689 16 C 0.073 3.927 17 C 0.068 3.932 18 H 0.059 0.941 19 C 0.523 3.477 20 N -0.864 5.864 21 O -0.510 6.510 22 H 0.003 0.997 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.259 0.741 26 H 0.090 0.910 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.338 0.662 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.396 0.604 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 -1.837 -12.830 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.100 3.900 3 H 0.068 0.932 4 C -0.530 4.530 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.235 5.235 13 C -0.065 4.065 14 C -0.075 4.075 15 N -0.320 5.320 16 C -0.057 4.057 17 C -0.045 4.045 18 H 0.076 0.924 19 C 0.306 3.694 20 N -0.429 5.429 21 O -0.382 6.382 22 H 0.022 0.978 23 H 0.051 0.949 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.155 0.845 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.223 0.777 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.746 -1.688 -11.906 12.048 hybrid contribution 0.001 -0.103 0.447 0.459 sum -0.745 -1.790 -11.459 11.622 Atomic orbital electron populations 1.22438 1.00998 0.99423 1.00320 1.19441 0.89331 0.95509 0.85697 0.93160 1.21032 1.30179 1.12280 0.89548 0.92054 1.24911 0.95329 0.95188 0.98942 1.69884 1.37271 1.23174 1.23226 0.86513 0.78509 0.79920 0.82516 1.20743 1.21451 1.19966 1.62401 1.58731 1.01484 1.00885 1.22069 0.96702 0.90793 0.96916 1.22153 0.99020 0.96186 0.90136 1.60501 1.63006 1.03300 1.05151 1.21808 0.97390 0.90285 0.96239 1.21503 0.98165 0.91056 0.93763 0.92361 1.20498 0.84068 0.86397 0.78423 1.43919 1.33764 1.11350 1.53864 1.90767 1.25231 1.85077 1.37107 0.97797 0.94899 0.89250 0.93135 0.89187 0.94511 0.90946 0.94448 0.84527 0.90965 0.93903 0.77664 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.22 37.16 0.31 -3.94 16 2 C 0.21 5.40 1.98 -68.87 -0.14 5.26 16 3 H 0.05 1.50 5.96 -51.92 -0.31 1.19 16 4 C -0.49 -14.01 7.92 -34.44 -0.27 -14.28 16 5 H 0.06 1.75 7.08 -52.49 -0.37 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -26.37 11.32 55.43 0.63 -25.75 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.51 -11.38 4.21 -221.33 -0.93 -12.32 16 13 C 0.06 1.25 4.78 -3.77 -0.02 1.24 16 14 C 0.05 0.85 6.72 -3.76 -0.03 0.83 16 15 N -0.69 -9.69 6.90 -113.64 -0.78 -10.47 16 16 C 0.07 1.11 5.99 -3.77 -0.02 1.09 16 17 C 0.07 1.27 2.06 -68.81 -0.14 1.13 16 18 H 0.06 1.07 6.73 -51.93 -0.35 0.72 16 19 C 0.52 10.05 6.10 -10.99 -0.07 9.99 16 20 N -0.86 -11.75 8.87 31.22 0.28 -11.47 16 21 O -0.51 -12.40 16.28 5.56 0.09 -12.30 16 22 H 0.00 0.07 6.73 -51.93 -0.35 -0.28 16 23 H 0.03 0.77 6.40 -51.93 -0.33 0.44 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.09 1.90 6.74 -51.93 -0.35 1.55 16 27 H 0.04 0.74 6.42 -51.93 -0.33 0.40 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.34 3.75 8.90 -39.29 -0.35 3.40 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.06 8.83 -40.82 -0.36 3.70 16 34 H 0.40 4.83 8.93 -40.82 -0.36 4.47 16 LS Contribution 267.17 15.07 4.03 4.03 Total: -1.00 -33.46 267.17 -6.80 -40.26 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.61 Total: 8.12 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.47 Total: 2.83 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.81 Total: -60.01 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.46 -6.80 -40.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084024509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.799 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds