Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00020 * 2 1 4 4 O 1.20828 * 119.99767 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99820 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47567 * 59.99893 * 5 3 2 7 7 C 1.53002 * 109.47132 * 299.99310 * 5 3 2 8 8 C 1.53000 * 117.49620 * 128.75068 * 7 5 3 9 9 C 1.53002 * 117.49690 * 60.08967 * 7 5 3 10 10 N 1.46905 * 109.46944 * 179.97438 * 5 3 2 11 11 C 1.46906 * 110.99995 * 66.04457 * 10 5 3 12 12 C 1.46897 * 111.00158 * 189.99717 * 10 5 3 13 13 C 1.50694 * 109.47330 * 170.00077 * 12 10 5 14 14 H 1.07996 * 119.99970 * 0.02562 * 13 12 10 15 15 C 1.37886 * 120.00233 * 179.97438 * 13 12 10 16 16 N 1.31514 * 119.99466 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99837 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47209 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46703 * 120.00222 * 17 15 13 20 20 H 1.48501 * 109.46719 * 240.00137 * 17 15 13 21 21 H 1.09000 * 109.46903 * 60.00445 * 1 2 3 22 22 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47565 * 300.00411 * 1 2 3 24 24 H 1.08994 * 115.55289 * 274.42179 * 7 5 3 25 25 H 1.09003 * 117.50052 * 0.02562 * 8 7 5 26 26 H 1.09001 * 117.49872 * 145.02430 * 8 7 5 27 27 H 1.08996 * 117.50365 * 214.97689 * 9 7 5 28 28 H 1.08998 * 117.49814 * 0.02562 * 9 7 5 29 29 H 1.08992 * 109.47459 * 183.95199 * 11 10 5 30 30 H 1.09004 * 109.47040 * 303.95350 * 11 10 5 31 31 H 1.09000 * 109.47033 * 63.95302 * 11 10 5 32 32 H 1.09009 * 109.47296 * 290.00003 * 12 10 5 33 33 H 1.09002 * 109.47055 * 49.99701 * 12 10 5 34 34 H 0.97003 * 119.99500 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5811 1.2484 8 6 5.2066 -0.4712 1.0502 9 6 3.7884 -0.9025 1.4323 10 7 3.9828 2.6836 -0.0011 11 6 3.5985 3.3466 1.2522 12 6 5.4271 2.8055 -0.2397 13 6 5.7767 4.2519 -0.4775 14 1 5.0034 5.0053 -0.4533 15 6 7.0841 4.6135 -0.7249 16 7 8.0258 3.6960 -0.7539 17 14 7.5172 6.4065 -1.0204 18 1 6.2867 7.2334 -0.9359 19 1 8.4878 6.8573 0.0092 20 1 8.1216 6.5539 -2.3688 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 4.1671 1.1995 2.1444 25 1 5.5358 -0.6690 0.0301 26 1 5.9787 -0.5454 1.8161 27 1 3.6281 -1.2604 2.4493 28 1 3.1847 -1.3845 0.6634 29 1 3.8557 4.4044 1.1974 30 1 2.5243 3.2413 1.4045 31 1 4.1304 2.8861 2.0848 32 1 5.9715 2.4384 0.6305 33 1 5.7017 2.2166 -1.1149 34 1 8.9456 3.9505 -0.9275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084093050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -45.961209 kcal Electronic energy + Delta-G solvation = -16399.936106 eV Core-core repulsion = 13720.540777 eV Total energy + Delta-G solvation = -2679.395329 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37582 -37.89121 -36.24021 -34.92601 -32.45316 -29.04912 -27.33504 -26.71154 -24.29393 -22.13712 -21.70627 -21.24434 -19.31512 -17.33069 -16.51722 -16.22797 -15.95462 -15.24045 -14.65836 -14.47742 -13.69349 -13.63563 -13.00645 -12.57596 -12.46427 -11.96520 -11.87878 -11.29619 -11.17651 -11.13902 -10.93153 -10.76051 -10.68930 -10.52774 -10.18120 -10.10622 -9.87290 -9.45712 -9.18004 -8.43422 -7.28894 -6.02839 -4.03470 2.58480 2.91714 3.32275 3.39675 3.45816 4.07516 4.44314 4.88133 4.95294 5.08248 5.18097 5.24912 5.29094 5.32541 5.35152 5.53130 5.65131 5.87888 5.91837 6.14692 6.25703 6.26054 6.40183 6.50329 6.62820 6.88658 7.21318 7.34193 7.76746 7.99141 8.13953 8.19321 8.50390 9.04512 9.60464 11.08057 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.007364 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.162982 B = 3801.541847 C = 4324.349682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.469 3.531 4 O -0.489 6.489 5 C 0.126 3.874 6 H 0.112 0.888 7 C -0.187 4.187 8 C -0.161 4.161 9 C -0.173 4.173 10 N -0.517 5.517 11 C 0.029 3.971 12 C 0.197 3.803 13 C -0.507 4.507 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.059 0.941 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.113 0.887 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.001 0.999 33 H 0.030 0.970 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -9.620 3.680 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.375 6.375 5 C 0.015 3.985 6 H 0.129 0.871 7 C -0.207 4.207 8 C -0.198 4.198 9 C -0.211 4.211 10 N -0.241 5.241 11 C -0.119 4.119 12 C 0.073 3.927 13 C -0.545 4.545 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.131 0.869 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.233 -9.068 3.248 14.053 hybrid contribution 0.628 0.627 0.485 1.011 sum -9.606 -8.441 3.733 13.321 Atomic orbital electron populations 1.23157 0.77513 1.02996 1.02237 1.86549 1.22478 1.34112 1.84626 1.23955 0.91954 0.80980 0.72068 1.90607 1.66728 1.36149 1.43974 1.20953 0.86143 0.93367 0.98029 0.87083 1.22951 1.05212 0.92015 1.00569 1.22971 0.91741 1.02053 1.03034 1.23013 0.98971 0.96522 1.02554 1.62159 1.20791 1.06828 1.34276 1.22414 0.99399 1.00585 0.89546 1.19771 0.78946 0.97867 0.96129 1.21202 0.92987 0.92631 1.47728 0.91699 1.24969 0.96305 0.97713 0.95565 1.69969 1.00952 1.32796 1.50074 0.86434 0.78377 0.84881 0.77715 1.19629 1.21127 1.21002 0.92216 0.88629 0.92320 0.86944 0.88465 0.88842 0.89332 0.87827 0.90557 0.92198 0.96614 0.98117 0.95215 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.21 8.51 -39.26 -0.33 -5.54 16 3 C 0.47 8.29 6.93 36.00 0.25 8.54 16 4 O -0.49 -9.90 14.08 -18.75 -0.26 -10.16 16 5 C 0.13 2.34 2.47 -68.86 -0.17 2.17 16 6 H 0.11 2.01 7.69 -51.93 -0.40 1.61 16 7 C -0.19 -3.07 4.16 -90.62 -0.38 -3.44 16 8 C -0.16 -2.38 10.18 -26.69 -0.27 -2.65 16 9 C -0.17 -2.28 9.45 -26.69 -0.25 -2.53 16 10 N -0.52 -11.59 4.44 -237.72 -1.06 -12.64 16 11 C 0.03 0.60 8.49 60.07 0.51 1.11 16 12 C 0.20 5.08 4.39 -4.98 -0.02 5.06 16 13 C -0.51 -14.33 8.52 -34.44 -0.29 -14.63 16 14 H 0.06 1.85 7.10 -52.49 -0.37 1.48 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 17 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 22 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 24 H 0.11 1.93 5.83 -51.93 -0.30 1.63 16 25 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.31 6.85 -51.93 -0.36 0.96 16 29 H 0.08 1.69 6.86 -51.93 -0.36 1.34 16 30 H 0.06 1.20 5.83 -51.93 -0.30 0.90 16 31 H 0.02 0.31 6.04 -51.93 -0.31 0.00 16 32 H 0.00 0.03 7.71 -51.92 -0.40 -0.37 16 33 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 280.68 15.07 4.23 4.23 Total: -1.00 -31.10 280.68 -6.25 -37.34 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.88 Total: -0.84 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 0.34 Total: -3.45 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.32 Total: -38.34 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.60 Total: -15.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.10 -6.25 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084093050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.618 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds