Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00020 * 2 1 4 4 O 1.20828 * 119.99767 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99820 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47567 * 59.99893 * 5 3 2 7 7 C 1.53002 * 109.47132 * 299.99310 * 5 3 2 8 8 C 1.53000 * 117.49620 * 128.75068 * 7 5 3 9 9 C 1.53002 * 117.49690 * 60.08967 * 7 5 3 10 10 N 1.46905 * 109.46944 * 179.97438 * 5 3 2 11 11 C 1.46906 * 110.99995 * 66.04457 * 10 5 3 12 12 C 1.46897 * 111.00158 * 189.99717 * 10 5 3 13 13 C 1.50694 * 109.47330 * 170.00077 * 12 10 5 14 14 H 1.07996 * 119.99970 * 0.02562 * 13 12 10 15 15 C 1.37886 * 120.00233 * 179.97438 * 13 12 10 16 16 N 1.31514 * 119.99466 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99837 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47209 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46703 * 120.00222 * 17 15 13 20 20 H 1.48501 * 109.46719 * 240.00137 * 17 15 13 21 21 H 1.09000 * 109.46903 * 60.00445 * 1 2 3 22 22 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47565 * 300.00411 * 1 2 3 24 24 H 1.08994 * 115.55289 * 274.42179 * 7 5 3 25 25 H 1.09003 * 117.50052 * 0.02562 * 8 7 5 26 26 H 1.09001 * 117.49872 * 145.02430 * 8 7 5 27 27 H 1.08996 * 117.50365 * 214.97689 * 9 7 5 28 28 H 1.08998 * 117.49814 * 0.02562 * 9 7 5 29 29 H 1.08992 * 109.47459 * 183.95199 * 11 10 5 30 30 H 1.09004 * 109.47040 * 303.95350 * 11 10 5 31 31 H 1.09000 * 109.47033 * 63.95302 * 11 10 5 32 32 H 1.09009 * 109.47296 * 290.00003 * 12 10 5 33 33 H 1.09002 * 109.47055 * 49.99701 * 12 10 5 34 34 H 0.97003 * 119.99500 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5811 1.2484 8 6 5.2066 -0.4712 1.0502 9 6 3.7884 -0.9025 1.4323 10 7 3.9828 2.6836 -0.0011 11 6 3.5985 3.3466 1.2522 12 6 5.4271 2.8055 -0.2397 13 6 5.7767 4.2519 -0.4775 14 1 5.0034 5.0053 -0.4533 15 6 7.0841 4.6135 -0.7249 16 7 8.0258 3.6960 -0.7539 17 14 7.5172 6.4065 -1.0204 18 1 6.2867 7.2334 -0.9359 19 1 8.4878 6.8573 0.0092 20 1 8.1216 6.5539 -2.3688 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 4.1671 1.1995 2.1444 25 1 5.5358 -0.6690 0.0301 26 1 5.9787 -0.5454 1.8161 27 1 3.6281 -1.2604 2.4493 28 1 3.1847 -1.3845 0.6634 29 1 3.8557 4.4044 1.1974 30 1 2.5243 3.2413 1.4045 31 1 4.1304 2.8861 2.0848 32 1 5.9715 2.4384 0.6305 33 1 5.7017 2.2166 -1.1149 34 1 8.9456 3.9505 -0.9275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084093050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -66.064661 kcal Electronic energy + Delta-G solvation = -16400.807857 eV Core-core repulsion = 13720.540777 eV Total energy + Delta-G solvation = -2680.267080 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74641 -39.29536 -37.55773 -36.50968 -34.54168 -30.55330 -29.08749 -28.02972 -26.15735 -23.30173 -23.17424 -22.82845 -20.78451 -18.72967 -18.52944 -17.53762 -17.24687 -16.75604 -16.54499 -15.93551 -15.29337 -15.02838 -14.47420 -14.24951 -13.91186 -13.65526 -13.13571 -12.87575 -12.75471 -12.71266 -12.52599 -12.48589 -12.31422 -12.04093 -11.75401 -11.64940 -11.33871 -11.17511 -10.76689 -10.59868 -9.06115 -8.20169 -6.29105 1.19626 1.40904 1.41850 1.54991 1.66879 2.41440 2.85793 3.12814 3.35320 3.63198 3.86847 3.99496 4.04139 4.31351 4.37684 4.38035 4.45375 4.52389 4.73969 4.75234 4.84006 4.98623 5.05663 5.18342 5.23302 5.27180 5.32264 5.39054 5.64602 6.00639 6.23097 6.48487 6.83082 6.87515 7.39774 8.90705 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.007364 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.162982 B = 3801.541847 C = 4324.349682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.478 3.522 4 O -0.521 6.521 5 C 0.122 3.878 6 H 0.110 0.890 7 C -0.209 4.209 8 C -0.168 4.168 9 C -0.137 4.137 10 N -0.534 5.534 11 C 0.038 3.962 12 C 0.218 3.782 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.277 1.277 21 H 0.057 0.943 22 H 0.137 0.863 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.024 0.976 32 H -0.018 1.018 33 H 0.008 0.992 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 -10.420 4.061 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.321 3.679 4 O -0.409 6.409 5 C 0.012 3.988 6 H 0.128 0.872 7 C -0.229 4.229 8 C -0.205 4.205 9 C -0.174 4.174 10 N -0.258 5.258 11 C -0.109 4.109 12 C 0.093 3.907 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.203 1.203 21 H 0.075 0.925 22 H 0.155 0.845 23 H 0.078 0.922 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.000 1.000 33 H 0.026 0.974 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.105 -9.903 3.635 15.317 hybrid contribution 0.812 0.772 0.361 1.177 sum -10.293 -9.131 3.996 14.328 Atomic orbital electron populations 1.23546 0.75026 1.05727 1.02249 1.86510 1.24700 1.31862 1.83785 1.23621 0.91425 0.81488 0.71370 1.90595 1.67238 1.37344 1.45690 1.20924 0.87363 0.91279 0.99248 0.87195 1.22790 1.07494 0.93604 0.99029 1.23035 0.92763 1.01583 1.03103 1.23095 0.97113 0.93127 1.04092 1.61977 1.18490 1.09941 1.35347 1.22296 0.99933 0.99356 0.89361 1.19338 0.80957 0.96201 0.94197 1.21483 0.93250 0.93718 1.48196 0.92542 1.25808 0.96105 1.02176 0.95036 1.70069 1.01401 1.34890 1.50521 0.85383 0.78152 0.79467 0.77907 1.19320 1.20181 1.20259 0.92461 0.84510 0.92171 0.87981 0.88930 0.88383 0.87025 0.86810 0.92432 0.91225 0.95768 1.00014 0.97414 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.35 -9.34 8.51 -51.43 -0.44 -9.78 16 3 C 0.48 16.45 6.93 71.23 0.49 16.94 16 4 O -0.52 -20.81 14.08 21.96 0.31 -20.50 16 5 C 0.12 4.53 2.47 44.17 0.11 4.64 16 6 H 0.11 4.03 7.69 -2.39 -0.02 4.01 16 7 C -0.21 -6.69 4.16 -10.79 -0.04 -6.74 16 8 C -0.17 -4.81 10.18 30.62 0.31 -4.49 16 9 C -0.14 -3.24 9.45 30.62 0.29 -2.95 16 10 N -0.53 -24.43 4.44 -906.02 -4.02 -28.45 16 11 C 0.04 1.64 8.49 127.69 1.08 2.72 16 12 C 0.22 11.61 4.39 85.56 0.38 11.99 16 13 C -0.53 -30.50 8.52 25.60 0.22 -30.28 16 14 H 0.06 3.29 7.10 -2.91 -0.02 3.27 16 15 C 0.01 0.41 5.46 84.66 0.46 0.87 16 16 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 17 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 22 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 24 H 0.10 3.48 5.83 -2.39 -0.01 3.46 16 25 H 0.09 2.72 8.05 -2.39 -0.02 2.70 16 26 H 0.10 2.69 8.14 -2.39 -0.02 2.68 16 27 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.11 2.50 6.85 -2.39 -0.02 2.48 16 29 H 0.06 2.62 6.86 -2.39 -0.02 2.60 16 30 H 0.07 2.81 5.83 -2.38 -0.01 2.80 16 31 H 0.02 0.97 6.04 -2.39 -0.01 0.96 16 32 H -0.02 -1.00 7.71 -2.38 -0.02 -1.02 16 33 H 0.01 0.44 7.93 -2.39 -0.02 0.42 16 34 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -66.87 280.68 3.74 -63.13 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.08 Total: 9.27 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.50 Total: -5.58 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -3.74 Total: -83.41 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.13 Total: -30.28 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.87 3.74 -63.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084093050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.937 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds