Wall clock time and date at job start Mon Mar 30 2020 02:45:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34231 * 117.00020 * 2 1
4 4 O 1.20828 * 119.99767 * 359.97438 * 3 2 1
5 5 C 1.50695 * 119.99820 * 180.02562 * 3 2 1
6 6 H 1.09002 * 109.47567 * 59.99893 * 5 3 2
7 7 C 1.53002 * 109.47132 * 299.99310 * 5 3 2
8 8 C 1.53000 * 117.49620 * 128.75068 * 7 5 3
9 9 C 1.53002 * 117.49690 * 60.08967 * 7 5 3
10 10 N 1.46905 * 109.46944 * 179.97438 * 5 3 2
11 11 C 1.46906 * 110.99995 * 66.04457 * 10 5 3
12 12 C 1.46897 * 111.00158 * 189.99717 * 10 5 3
13 13 C 1.50694 * 109.47330 * 170.00077 * 12 10 5
14 14 H 1.07996 * 119.99970 * 0.02562 * 13 12 10
15 15 C 1.37886 * 120.00233 * 179.97438 * 13 12 10
16 16 N 1.31514 * 119.99466 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 119.99837 * 179.97438 * 15 13 12
18 18 H 1.48494 * 109.47209 * 0.02562 * 17 15 13
19 19 H 1.48496 * 109.46703 * 120.00222 * 17 15 13
20 20 H 1.48501 * 109.46719 * 240.00137 * 17 15 13
21 21 H 1.09000 * 109.46903 * 60.00445 * 1 2 3
22 22 H 1.09002 * 109.47313 * 179.97438 * 1 2 3
23 23 H 1.08999 * 109.47565 * 300.00411 * 1 2 3
24 24 H 1.08994 * 115.55289 * 274.42179 * 7 5 3
25 25 H 1.09003 * 117.50052 * 0.02562 * 8 7 5
26 26 H 1.09001 * 117.49872 * 145.02430 * 8 7 5
27 27 H 1.08996 * 117.50365 * 214.97689 * 9 7 5
28 28 H 1.08998 * 117.49814 * 0.02562 * 9 7 5
29 29 H 1.08992 * 109.47459 * 183.95199 * 11 10 5
30 30 H 1.09004 * 109.47040 * 303.95350 * 11 10 5
31 31 H 1.09000 * 109.47033 * 63.95302 * 11 10 5
32 32 H 1.09009 * 109.47296 * 290.00003 * 12 10 5
33 33 H 1.09002 * 109.47055 * 49.99701 * 12 10 5
34 34 H 0.97003 * 119.99500 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9557 0.7809 -0.8908
7 6 4.1138 0.5811 1.2484
8 6 5.2066 -0.4712 1.0502
9 6 3.7884 -0.9025 1.4323
10 7 3.9828 2.6836 -0.0011
11 6 3.5985 3.3466 1.2522
12 6 5.4271 2.8055 -0.2397
13 6 5.7767 4.2519 -0.4775
14 1 5.0034 5.0053 -0.4533
15 6 7.0841 4.6135 -0.7249
16 7 8.0258 3.6960 -0.7539
17 14 7.5172 6.4065 -1.0204
18 1 6.2867 7.2334 -0.9359
19 1 8.4878 6.8573 0.0092
20 1 8.1216 6.5539 -2.3688
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3634 0.5139 0.8899
24 1 4.1671 1.1995 2.1444
25 1 5.5358 -0.6690 0.0301
26 1 5.9787 -0.5454 1.8161
27 1 3.6281 -1.2604 2.4493
28 1 3.1847 -1.3845 0.6634
29 1 3.8557 4.4044 1.1974
30 1 2.5243 3.2413 1.4045
31 1 4.1304 2.8861 2.0848
32 1 5.9715 2.4384 0.6305
33 1 5.7017 2.2166 -1.1149
34 1 8.9456 3.9505 -0.9275
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084093050.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:16
Heat of formation + Delta-G solvation = -66.064661 kcal
Electronic energy + Delta-G solvation = -16400.807857 eV
Core-core repulsion = 13720.540777 eV
Total energy + Delta-G solvation = -2680.267080 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.74641 -39.29536 -37.55773 -36.50968 -34.54168 -30.55330 -29.08749 -28.02972
-26.15735 -23.30173 -23.17424 -22.82845 -20.78451 -18.72967 -18.52944 -17.53762
-17.24687 -16.75604 -16.54499 -15.93551 -15.29337 -15.02838 -14.47420 -14.24951
-13.91186 -13.65526 -13.13571 -12.87575 -12.75471 -12.71266 -12.52599 -12.48589
-12.31422 -12.04093 -11.75401 -11.64940 -11.33871 -11.17511 -10.76689 -10.59868
-9.06115 -8.20169 -6.29105 1.19626 1.40904 1.41850 1.54991 1.66879
2.41440 2.85793 3.12814 3.35320 3.63198 3.86847 3.99496 4.04139
4.31351 4.37684 4.38035 4.45375 4.52389 4.73969 4.75234 4.84006
4.98623 5.05663 5.18342 5.23302 5.27180 5.32264 5.39054 5.64602
6.00639 6.23097 6.48487 6.83082 6.87515 7.39774 8.90705
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.036253 B = 0.007364 C = 0.006473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 772.162982 B = 3801.541847 C = 4324.349682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.353 6.353
3 C 0.478 3.522
4 O -0.521 6.521
5 C 0.122 3.878
6 H 0.110 0.890
7 C -0.209 4.209
8 C -0.168 4.168
9 C -0.137 4.137
10 N -0.534 5.534
11 C 0.038 3.962
12 C 0.218 3.782
13 C -0.528 4.528
14 H 0.056 0.944
15 C 0.007 3.993
16 N -0.929 5.929
17 Si 0.966 3.034
18 H -0.269 1.269
19 H -0.276 1.276
20 H -0.277 1.277
21 H 0.057 0.943
22 H 0.137 0.863
23 H 0.059 0.941
24 H 0.102 0.898
25 H 0.092 0.908
26 H 0.098 0.902
27 H 0.111 0.889
28 H 0.114 0.886
29 H 0.057 0.943
30 H 0.069 0.931
31 H 0.024 0.976
32 H -0.018 1.018
33 H 0.008 0.992
34 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.797 -10.420 4.061 15.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.269 6.269
3 C 0.321 3.679
4 O -0.409 6.409
5 C 0.012 3.988
6 H 0.128 0.872
7 C -0.229 4.229
8 C -0.205 4.205
9 C -0.174 4.174
10 N -0.258 5.258
11 C -0.109 4.109
12 C 0.093 3.907
13 C -0.566 4.566
14 H 0.075 0.925
15 C -0.191 4.191
16 N -0.569 5.569
17 Si 0.791 3.209
18 H -0.193 1.193
19 H -0.202 1.202
20 H -0.203 1.203
21 H 0.075 0.925
22 H 0.155 0.845
23 H 0.078 0.922
24 H 0.120 0.880
25 H 0.111 0.889
26 H 0.116 0.884
27 H 0.130 0.870
28 H 0.132 0.868
29 H 0.076 0.924
30 H 0.088 0.912
31 H 0.042 0.958
32 H 0.000 1.000
33 H 0.026 0.974
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -11.105 -9.903 3.635 15.317
hybrid contribution 0.812 0.772 0.361 1.177
sum -10.293 -9.131 3.996 14.328
Atomic orbital electron populations
1.23546 0.75026 1.05727 1.02249 1.86510 1.24700 1.31862 1.83785
1.23621 0.91425 0.81488 0.71370 1.90595 1.67238 1.37344 1.45690
1.20924 0.87363 0.91279 0.99248 0.87195 1.22790 1.07494 0.93604
0.99029 1.23035 0.92763 1.01583 1.03103 1.23095 0.97113 0.93127
1.04092 1.61977 1.18490 1.09941 1.35347 1.22296 0.99933 0.99356
0.89361 1.19338 0.80957 0.96201 0.94197 1.21483 0.93250 0.93718
1.48196 0.92542 1.25808 0.96105 1.02176 0.95036 1.70069 1.01401
1.34890 1.50521 0.85383 0.78152 0.79467 0.77907 1.19320 1.20181
1.20259 0.92461 0.84510 0.92171 0.87981 0.88930 0.88383 0.87025
0.86810 0.92432 0.91225 0.95768 1.00014 0.97414 0.92602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.53 10.56 113.37 1.20 1.72 16
2 O -0.35 -9.34 8.51 -51.43 -0.44 -9.78 16
3 C 0.48 16.45 6.93 71.23 0.49 16.94 16
4 O -0.52 -20.81 14.08 21.96 0.31 -20.50 16
5 C 0.12 4.53 2.47 44.17 0.11 4.64 16
6 H 0.11 4.03 7.69 -2.39 -0.02 4.01 16
7 C -0.21 -6.69 4.16 -10.79 -0.04 -6.74 16
8 C -0.17 -4.81 10.18 30.62 0.31 -4.49 16
9 C -0.14 -3.24 9.45 30.62 0.29 -2.95 16
10 N -0.53 -24.43 4.44 -906.02 -4.02 -28.45 16
11 C 0.04 1.64 8.49 127.69 1.08 2.72 16
12 C 0.22 11.61 4.39 85.56 0.38 11.99 16
13 C -0.53 -30.50 8.52 25.60 0.22 -30.28 16
14 H 0.06 3.29 7.10 -2.91 -0.02 3.27 16
15 C 0.01 0.41 5.46 84.66 0.46 0.87 16
16 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16
17 Si 0.97 44.85 29.54 68.60 2.03 46.87 16
18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16
20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
21 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16
22 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16
23 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16
24 H 0.10 3.48 5.83 -2.39 -0.01 3.46 16
25 H 0.09 2.72 8.05 -2.39 -0.02 2.70 16
26 H 0.10 2.69 8.14 -2.39 -0.02 2.68 16
27 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16
28 H 0.11 2.50 6.85 -2.39 -0.02 2.48 16
29 H 0.06 2.62 6.86 -2.39 -0.02 2.60 16
30 H 0.07 2.81 5.83 -2.38 -0.01 2.80 16
31 H 0.02 0.97 6.04 -2.39 -0.01 0.96 16
32 H -0.02 -1.00 7.71 -2.38 -0.02 -1.02 16
33 H 0.01 0.44 7.93 -2.39 -0.02 0.42 16
34 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16
Total: -1.00 -66.87 280.68 3.74 -63.13
By element:
Atomic # 1 Polarization: 8.19 SS G_CDS: 1.08 Total: 9.27 kcal
Atomic # 6 Polarization: -10.08 SS G_CDS: 4.50 Total: -5.58 kcal
Atomic # 7 Polarization: -79.67 SS G_CDS: -3.74 Total: -83.41 kcal
Atomic # 8 Polarization: -30.15 SS G_CDS: -0.13 Total: -30.28 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal
Total: -66.87 3.74 -63.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084093050.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.937 kcal
(2) G-P(sol) polarization free energy of solvation -66.866 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.065 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds