Wall clock time and date at job start Mon Mar 30 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34785 * 119.99903 * 2 1 4 4 O 1.21274 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99670 * 179.72093 * 3 2 1 6 6 H 1.09001 * 109.49212 * 300.27094 * 5 3 2 7 7 C 1.53049 * 109.49231 * 60.31552 * 5 3 2 8 8 N 1.46964 * 109.36636 * 178.34574 * 7 5 3 9 9 C 1.46952 * 110.89600 * 300.71389 * 8 7 5 10 10 C 1.53045 * 109.36629 * 59.30757 * 9 8 7 11 11 N 1.46952 * 109.36682 * 301.59840 * 10 9 8 12 12 C 1.46901 * 111.00218 * 183.18773 * 11 10 9 13 13 C 1.50700 * 109.47219 * 51.69340 * 12 11 10 14 14 H 1.07999 * 119.99811 * 4.87410 * 13 12 11 15 15 C 1.37879 * 120.00030 * 184.87441 * 13 12 11 16 16 N 1.31517 * 119.99825 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99945 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46830 * 90.00728 * 17 15 13 19 19 H 1.48504 * 109.47140 * 210.00399 * 17 15 13 20 20 H 1.48494 * 109.47339 * 330.00623 * 17 15 13 21 21 H 1.08999 * 109.47486 * 300.00765 * 1 2 3 22 22 H 1.09003 * 109.46414 * 60.00347 * 1 2 3 23 23 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 24 24 H 0.96994 * 119.99804 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.48991 * 298.33588 * 7 5 3 26 26 H 1.09003 * 109.48686 * 58.40051 * 7 5 3 27 27 H 1.00900 * 110.97788 * 64.58110 * 8 7 5 28 28 H 1.09001 * 109.49258 * 299.34136 * 9 8 7 29 29 H 1.08999 * 109.49069 * 179.27934 * 9 8 7 30 30 H 1.09002 * 109.49027 * 181.62864 * 10 9 8 31 31 H 1.09000 * 109.48992 * 61.56958 * 10 9 8 32 32 H 1.09005 * 109.47238 * 171.69215 * 12 11 10 33 33 H 1.08999 * 109.47263 * 291.69101 * 12 11 10 34 34 H 0.97003 * 119.99604 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 0.0064 6 1 4.0058 0.6514 0.8966 7 6 4.1618 0.4497 -1.2432 8 7 5.6309 0.4858 -1.2542 9 6 6.1212 1.8712 -1.2500 10 6 5.6053 2.5883 -0.0002 11 7 4.1362 2.5525 0.0106 12 6 3.5999 3.2973 1.1576 13 6 4.2090 4.6753 1.1911 14 1 4.8621 4.9965 0.3932 15 6 3.9325 5.5260 2.2404 16 7 4.4637 6.7287 2.2693 17 14 2.8024 4.9706 3.6201 18 1 3.6055 4.3187 4.6856 19 1 2.0943 6.1478 4.1842 20 1 1.8090 4.0039 3.0875 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 1.9499 -0.8400 0.0004 25 1 3.8233 -0.5864 -1.2334 26 1 3.7793 0.9492 -2.1333 27 1 6.0110 -0.0346 -0.4779 28 1 5.7610 2.3872 -2.1400 29 1 7.2111 1.8712 -1.2454 30 1 5.9438 3.6243 -0.0096 31 1 5.9878 2.0885 0.8897 32 1 2.5172 3.3808 1.0625 33 1 3.8439 2.7697 2.0797 34 1 4.2689 7.3273 3.0073 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084212015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:56 Heat of formation + Delta-G solvation = -10.601261 kcal Electronic energy + Delta-G solvation = -16662.144162 eV Core-core repulsion = 14016.574907 eV Total energy + Delta-G solvation = -2645.569255 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01694 -37.81763 -34.74613 -33.83076 -32.13939 -31.06363 -28.03814 -26.76901 -24.45916 -23.54493 -21.31552 -20.58950 -19.75896 -17.19949 -16.64944 -15.86522 -15.60341 -15.31479 -14.42810 -14.27311 -14.10343 -13.94412 -13.49564 -12.86124 -12.73149 -12.27868 -12.26628 -12.04217 -11.36706 -11.32507 -10.99232 -10.81853 -10.56037 -10.45398 -9.92274 -9.63124 -9.04471 -8.79053 -8.47874 -8.16873 -7.43237 -6.00784 -3.96200 2.95364 3.30913 3.31546 3.39557 3.48257 4.35854 4.48503 4.59912 4.99254 5.15426 5.27117 5.32684 5.35569 5.51839 5.56935 5.62188 5.69326 5.82017 5.90663 6.07316 6.45419 6.48177 6.60874 6.90562 7.01062 7.21181 7.44938 7.54608 7.76276 7.85799 8.06216 8.55934 8.69776 9.04702 9.61782 11.12029 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.011112 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.334152 B = 2519.258895 C = 3556.603935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.744 5.744 3 C 0.514 3.486 4 O -0.498 6.498 5 C 0.027 3.973 6 H 0.053 0.947 7 C 0.074 3.926 8 N -0.683 5.683 9 C 0.053 3.947 10 C 0.026 3.974 11 N -0.503 5.503 12 C 0.145 3.855 13 C -0.509 4.509 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.902 5.902 17 Si 0.873 3.127 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.265 1.265 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.397 0.603 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.335 0.665 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.021 0.979 32 H 0.072 0.928 33 H -0.028 1.028 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -16.980 -4.409 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.399 5.399 3 C 0.299 3.701 4 O -0.371 6.371 5 C -0.087 4.087 6 H 0.071 0.929 7 C -0.057 4.057 8 N -0.311 5.311 9 C -0.076 4.076 10 C -0.104 4.104 11 N -0.228 5.228 12 C 0.020 3.980 13 C -0.547 4.547 14 H 0.099 0.901 15 C -0.132 4.132 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.189 1.189 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.230 0.770 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.039 0.961 32 H 0.090 0.910 33 H -0.011 1.011 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.739 -15.840 -5.437 16.970 hybrid contribution -0.328 -0.698 2.695 2.803 sum -3.067 -16.538 -2.742 17.042 Atomic orbital electron populations 1.21459 0.80020 1.01600 1.02308 1.45850 1.07425 1.08591 1.78011 1.20584 0.89921 0.83487 0.76141 1.90700 1.69882 1.30527 1.45949 1.22404 0.92122 0.94617 0.99595 0.92942 1.22024 0.88359 0.98785 0.96551 1.60868 1.06816 1.14424 1.48956 1.22233 0.99154 0.87356 0.98864 1.22809 0.88244 1.03627 0.95682 1.62019 1.07217 1.07173 1.46410 1.20658 0.99269 0.93455 0.84661 1.21068 1.29159 0.96386 1.08093 0.90088 1.24849 0.95670 0.94787 0.97905 1.69895 1.44725 1.07219 1.32296 0.86869 0.81881 0.78625 0.82547 1.20640 1.21115 1.18932 0.92525 0.92325 0.91067 0.77033 0.90746 0.89686 0.84875 0.90051 0.90570 0.87708 0.96054 0.91025 1.01087 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 10.70 59.85 0.64 1.63 16 2 N -0.74 -9.24 5.62 -67.08 -0.38 -9.62 16 3 C 0.51 9.13 6.88 -10.98 -0.08 9.05 16 4 O -0.50 -11.46 13.59 5.56 0.08 -11.39 16 5 C 0.03 0.46 2.36 -68.81 -0.16 0.30 16 6 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 7 C 0.07 0.99 5.89 -3.76 -0.02 0.97 16 8 N -0.68 -9.02 6.91 -113.64 -0.79 -9.81 16 9 C 0.05 0.81 6.72 -3.77 -0.03 0.78 16 10 C 0.03 0.50 5.26 -3.77 -0.02 0.48 16 11 N -0.50 -10.92 4.46 -229.33 -1.02 -11.94 16 12 C 0.15 3.79 3.41 -4.98 -0.02 3.78 16 13 C -0.51 -15.07 8.88 -34.44 -0.31 -15.38 16 14 H 0.08 2.54 6.54 -52.49 -0.34 2.20 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 17 Si 0.87 22.89 27.37 -169.99 -4.65 18.24 16 18 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.96 6.68 56.52 0.38 -6.59 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.40 3.47 8.29 -40.82 -0.34 3.13 16 25 H 0.07 0.75 7.63 -51.93 -0.40 0.35 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.33 3.90 8.89 -39.29 -0.35 3.55 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.10 2.32 5.97 -51.93 -0.31 2.01 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 2.04 4.61 -51.93 -0.24 1.80 16 33 H -0.03 -0.75 7.29 -51.93 -0.38 -1.13 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 271.06 15.07 4.08 4.08 Total: -1.00 -35.19 271.06 -6.89 -42.08 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.90 Total: 2.42 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.08 Total: 3.59 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -1.41 Total: -59.03 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.65 Total: 18.24 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.19 -6.89 -42.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084212015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.476 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds