Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34785 * 119.99903 * 2 1 4 4 O 1.21274 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99670 * 179.72093 * 3 2 1 6 6 H 1.09001 * 109.49212 * 300.27094 * 5 3 2 7 7 C 1.53049 * 109.49231 * 60.31552 * 5 3 2 8 8 N 1.46964 * 109.36636 * 178.34574 * 7 5 3 9 9 C 1.46952 * 110.89600 * 300.71389 * 8 7 5 10 10 C 1.53045 * 109.36629 * 59.30757 * 9 8 7 11 11 N 1.46952 * 109.36682 * 301.59840 * 10 9 8 12 12 C 1.46901 * 111.00218 * 183.18773 * 11 10 9 13 13 C 1.50700 * 109.47219 * 51.69340 * 12 11 10 14 14 H 1.07999 * 119.99811 * 4.87410 * 13 12 11 15 15 C 1.37879 * 120.00030 * 184.87441 * 13 12 11 16 16 N 1.31517 * 119.99825 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99945 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46830 * 90.00728 * 17 15 13 19 19 H 1.48504 * 109.47140 * 210.00399 * 17 15 13 20 20 H 1.48494 * 109.47339 * 330.00623 * 17 15 13 21 21 H 1.08999 * 109.47486 * 300.00765 * 1 2 3 22 22 H 1.09003 * 109.46414 * 60.00347 * 1 2 3 23 23 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 24 24 H 0.96994 * 119.99804 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.48991 * 298.33588 * 7 5 3 26 26 H 1.09003 * 109.48686 * 58.40051 * 7 5 3 27 27 H 1.00900 * 110.97788 * 64.58110 * 8 7 5 28 28 H 1.09001 * 109.49258 * 299.34136 * 9 8 7 29 29 H 1.08999 * 109.49069 * 179.27934 * 9 8 7 30 30 H 1.09002 * 109.49027 * 181.62864 * 10 9 8 31 31 H 1.09000 * 109.48992 * 61.56958 * 10 9 8 32 32 H 1.09005 * 109.47238 * 171.69215 * 12 11 10 33 33 H 1.08999 * 109.47263 * 291.69101 * 12 11 10 34 34 H 0.97003 * 119.99604 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 0.0064 6 1 4.0058 0.6514 0.8966 7 6 4.1618 0.4497 -1.2432 8 7 5.6309 0.4858 -1.2542 9 6 6.1212 1.8712 -1.2500 10 6 5.6053 2.5883 -0.0002 11 7 4.1362 2.5525 0.0106 12 6 3.5999 3.2973 1.1576 13 6 4.2090 4.6753 1.1911 14 1 4.8621 4.9965 0.3932 15 6 3.9325 5.5260 2.2404 16 7 4.4637 6.7287 2.2693 17 14 2.8024 4.9706 3.6201 18 1 3.6055 4.3187 4.6856 19 1 2.0943 6.1478 4.1842 20 1 1.8090 4.0039 3.0875 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 1.9499 -0.8400 0.0004 25 1 3.8233 -0.5864 -1.2334 26 1 3.7793 0.9492 -2.1333 27 1 6.0110 -0.0346 -0.4779 28 1 5.7610 2.3872 -2.1400 29 1 7.2111 1.8712 -1.2454 30 1 5.9438 3.6243 -0.0096 31 1 5.9878 2.0885 0.8897 32 1 2.5172 3.3808 1.0625 33 1 3.8439 2.7697 2.0797 34 1 4.2689 7.3273 3.0073 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084212015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = -42.855481 kcal Electronic energy + Delta-G solvation = -16663.542810 eV Core-core repulsion = 14016.574907 eV Total energy + Delta-G solvation = -2646.967903 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41112 -39.18898 -36.18468 -35.36783 -34.18868 -32.40738 -29.91006 -28.00147 -26.01288 -24.83051 -23.10287 -22.02789 -21.11956 -19.05449 -18.33680 -17.21893 -16.83391 -16.72412 -16.20381 -15.82513 -15.48604 -15.38152 -15.02604 -14.59946 -14.16343 -14.09792 -13.50607 -13.19246 -13.08054 -12.77304 -12.61407 -12.41167 -12.18216 -12.10700 -11.85146 -11.64993 -10.90247 -10.59521 -10.09799 -9.45234 -9.08795 -8.34380 -6.34763 1.21578 1.27126 1.40096 1.60564 2.17361 2.28061 2.99283 3.02238 3.33184 3.82371 3.95791 4.06231 4.22874 4.28082 4.42661 4.51842 4.60626 4.63411 4.74269 4.93824 4.95315 5.03312 5.14593 5.19568 5.41571 5.64997 5.82867 5.87500 6.26350 6.44907 6.46383 6.65675 6.69612 7.27082 7.33625 8.81730 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.011112 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.334152 B = 2519.258895 C = 3556.603935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.719 5.719 3 C 0.508 3.492 4 O -0.562 6.562 5 C 0.025 3.975 6 H 0.070 0.930 7 C 0.083 3.917 8 N -0.670 5.670 9 C 0.067 3.933 10 C 0.029 3.971 11 N -0.525 5.525 12 C 0.162 3.838 13 C -0.516 4.516 14 H 0.046 0.954 15 C 0.011 3.989 16 N -0.944 5.944 17 Si 0.942 3.058 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.268 1.268 21 H 0.038 0.962 22 H 0.048 0.952 23 H 0.121 0.879 24 H 0.419 0.581 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.350 0.650 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.052 0.948 33 H -0.031 1.031 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 -20.535 -4.176 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.373 5.373 3 C 0.293 3.707 4 O -0.439 6.439 5 C -0.089 4.089 6 H 0.087 0.913 7 C -0.048 4.048 8 N -0.298 5.298 9 C -0.063 4.063 10 C -0.100 4.100 11 N -0.251 5.251 12 C 0.035 3.965 13 C -0.555 4.555 14 H 0.064 0.936 15 C -0.186 4.186 16 N -0.585 5.585 17 Si 0.767 3.233 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.193 1.193 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.139 0.861 24 H 0.256 0.744 25 H 0.141 0.859 26 H 0.087 0.913 27 H 0.169 0.831 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.070 0.930 33 H -0.014 1.014 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.085 -19.490 -5.213 20.409 hybrid contribution -0.196 0.352 2.533 2.565 sum -3.280 -19.138 -2.679 19.601 Atomic orbital electron populations 1.21654 0.78719 1.04399 1.00995 1.45645 1.08262 1.07970 1.75425 1.20815 0.90287 0.84007 0.75543 1.90676 1.70882 1.33025 1.49363 1.22624 0.92043 0.92089 1.02173 0.91290 1.22110 0.88226 1.00659 0.93820 1.60851 1.06644 1.12759 1.49508 1.22097 1.00489 0.87898 0.95783 1.22783 0.87097 1.01944 0.98219 1.61826 1.08496 1.10361 1.44392 1.20256 0.97901 0.92124 0.86248 1.21334 1.28531 0.98483 1.07112 0.93614 1.25729 0.97321 0.94814 1.00740 1.70027 1.46390 1.08506 1.33541 0.85782 0.79735 0.78376 0.79452 1.18696 1.20114 1.19278 0.94295 0.93323 0.86105 0.74359 0.85948 0.91258 0.83131 0.91282 0.87998 0.91831 0.95752 0.92998 1.01395 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.64 10.70 127.77 1.37 3.01 16 2 N -0.72 -15.59 5.62 -484.52 -2.72 -18.31 16 3 C 0.51 17.37 6.88 87.65 0.60 17.97 16 4 O -0.56 -26.22 13.59 -3.01 -0.04 -26.26 16 5 C 0.02 0.79 2.36 44.17 0.10 0.90 16 6 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.08 1.94 5.89 86.31 0.51 2.45 16 8 N -0.67 -15.33 6.91 -513.44 -3.55 -18.87 16 9 C 0.07 1.94 6.72 86.31 0.58 2.52 16 10 C 0.03 1.13 5.26 86.31 0.45 1.58 16 11 N -0.53 -23.07 4.46 -879.45 -3.92 -26.99 16 12 C 0.16 8.64 3.41 85.56 0.29 8.93 16 13 C -0.52 -31.96 8.88 25.60 0.23 -31.73 16 14 H 0.05 3.07 6.54 -2.91 -0.02 3.05 16 15 C 0.01 0.71 5.47 84.65 0.46 1.17 16 16 N -0.94 -61.37 13.96 21.45 0.30 -61.07 16 17 Si 0.94 48.14 27.37 68.60 1.88 50.02 16 18 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.27 -13.77 6.68 99.48 0.66 -13.11 16 21 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.42 5.29 8.29 -92.71 -0.77 4.52 16 25 H 0.12 1.76 7.63 -2.39 -0.02 1.74 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.35 6.60 8.89 -89.69 -0.80 5.80 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.06 2.98 5.97 -2.39 -0.01 2.97 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 3.05 4.61 -2.38 -0.01 3.03 16 33 H -0.03 -1.66 7.29 -2.39 -0.02 -1.68 16 34 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -81.30 271.06 -3.95 -85.25 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -0.49 Total: 9.44 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 4.60 Total: 6.80 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -9.89 Total: -125.25 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.88 Total: 50.02 kcal Total: -81.30 -3.95 -85.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084212015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.396 kcal (2) G-P(sol) polarization free energy of solvation -81.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds