Wall clock time and date at job start Mon Mar 30 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48497 * 109.46975 * 240.00112 * 3 2 1 5 5 H 1.48498 * 109.46936 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46825 * 120.00322 * 3 2 1 7 7 C 1.37876 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46725 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.46899 * 110.99963 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47137 * 180.02562 * 12 11 10 14 14 H 1.09002 * 110.02241 * 53.60430 * 13 12 11 15 15 C 1.54271 * 110.03232 * 292.16324 * 13 12 11 16 16 C 1.54889 * 104.19476 * 264.33039 * 15 13 12 17 17 C 1.54893 * 102.74761 * 322.05351 * 16 15 13 18 18 C 1.53877 * 110.03208 * 174.99827 * 13 12 11 19 19 H 1.08997 * 110.03315 * 359.95186 * 18 13 12 20 20 C 1.52997 * 110.03157 * 238.56541 * 18 13 12 21 21 O 1.42905 * 109.47264 * 175.00032 * 20 18 13 22 22 H 0.97000 * 119.99790 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47265 * 60.00344 * 9 7 2 24 24 H 1.08999 * 109.47219 * 299.99513 * 9 7 2 25 25 H 1.09006 * 109.46609 * 60.00419 * 10 9 7 26 26 H 1.08995 * 109.47750 * 300.00415 * 10 9 7 27 27 H 1.00897 * 110.99649 * 303.95710 * 11 10 9 28 28 H 1.09001 * 109.47249 * 59.99944 * 12 11 10 29 29 H 1.09001 * 109.46799 * 300.00340 * 12 11 10 30 30 H 1.09000 * 110.48075 * 23.00290 * 15 13 12 31 31 H 1.08993 * 110.49004 * 145.64543 * 15 13 12 32 32 H 1.08991 * 110.76267 * 80.37216 * 16 15 13 33 33 H 1.09006 * 110.75418 * 203.74642 * 16 15 13 34 34 H 1.09000 * 110.48408 * 279.26763 * 17 16 15 35 35 H 1.08997 * 110.48772 * 156.62814 * 17 16 15 36 36 H 1.09001 * 109.47289 * 54.99865 * 20 18 13 37 37 H 1.09004 * 109.47261 * 295.00121 * 20 18 13 38 38 H 0.96691 * 114.00079 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 7 1.5106 -4.9343 -0.0012 12 6 2.4350 -6.0760 -0.0018 13 6 1.6349 -7.3800 -0.0018 14 1 0.9215 -7.3801 -0.8259 15 6 0.8930 -7.5448 1.3408 16 6 1.8335 -8.4380 2.1873 17 6 2.3901 -9.4358 1.1415 18 6 2.5868 -8.5824 -0.1284 19 1 3.6186 -8.2368 -0.1908 20 6 2.2330 -9.4023 -1.3708 21 8 3.1935 -10.4465 -1.5419 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8724 -3.6048 0.8878 26 1 2.8712 -3.6041 -0.8921 27 1 0.8750 -4.9844 0.7808 28 1 3.0637 -6.0349 0.8877 29 1 3.0624 -6.0350 -0.8922 30 1 0.7530 -6.5761 1.8205 31 1 -0.0667 -8.0383 1.1882 32 1 2.6385 -7.8468 2.6237 33 1 1.2742 -8.9625 2.9621 34 1 1.6720 -10.2348 0.9568 35 1 3.3424 -9.8473 1.4759 36 1 2.2402 -8.7548 -2.2476 37 1 1.2411 -9.8374 -1.2487 38 1 3.0310 -11.0080 -2.3121 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084315550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:28 Heat of formation + Delta-G solvation = -83.197517 kcal Electronic energy + Delta-G solvation = -15707.463111 eV Core-core repulsion = 13162.286189 eV Total energy + Delta-G solvation = -2545.176922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.24925 -36.61671 -35.31109 -32.90385 -30.51611 -30.09832 -27.99214 -25.40457 -23.95678 -22.54682 -20.65867 -20.18810 -19.39439 -17.29546 -16.28639 -16.12737 -15.50204 -14.90524 -14.55412 -14.42416 -13.84683 -13.47402 -13.26147 -12.52748 -12.45405 -12.16743 -11.99716 -11.17514 -11.09600 -11.02599 -10.99858 -10.87220 -10.62939 -10.57873 -10.51917 -10.41436 -10.05659 -9.93819 -9.32624 -9.13655 -8.33455 -7.77296 -5.98160 -4.00767 3.34605 3.38730 3.41306 3.98693 4.44978 4.52231 4.57961 4.74505 4.99563 5.15851 5.22541 5.35722 5.37617 5.39757 5.49464 5.61489 5.65579 5.68277 5.81074 5.88001 5.99393 6.03611 6.14278 6.28209 6.31670 6.37743 6.41623 6.51158 7.00502 7.44237 7.51475 7.75159 7.85334 7.99632 8.10809 8.45591 9.06323 9.62862 11.13288 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050728 B = 0.004162 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.826890 B = 6725.865579 C = 6935.559105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.692 5.692 12 C 0.066 3.934 13 C -0.084 4.084 14 H 0.081 0.919 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.088 4.088 19 H 0.079 0.921 20 C 0.082 3.918 21 O -0.575 6.575 22 H 0.261 0.739 23 H 0.025 0.975 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.057 0.943 27 H 0.335 0.665 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -19.458 0.357 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.064 4.064 13 C -0.103 4.103 14 H 0.099 0.901 15 C -0.158 4.158 16 C -0.165 4.165 17 C -0.148 4.148 18 C -0.107 4.107 19 H 0.097 0.903 20 C 0.005 3.995 21 O -0.380 6.380 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.019 -19.054 0.211 19.292 hybrid contribution 0.534 0.792 0.354 1.018 sum 3.553 -18.262 0.564 18.613 Atomic orbital electron populations 1.69967 1.06033 1.26684 1.50622 1.25002 0.94844 0.99196 0.95293 0.86644 0.79564 0.83101 0.78598 1.20215 1.21257 1.20296 1.21154 0.92957 0.91066 1.50951 0.92825 1.19066 0.94028 0.90450 0.97671 1.22154 0.96967 0.88578 0.98577 1.60634 1.19922 1.02138 1.49698 1.21985 0.94341 0.90053 0.99980 1.21754 0.96901 0.93116 0.98491 0.90057 1.22423 0.98189 0.99958 0.95219 1.22543 0.99020 0.97457 0.97505 1.22329 1.00791 0.97324 0.94367 1.21801 1.00581 0.94517 0.93814 0.90254 1.22364 0.90875 0.88722 0.97570 1.86480 1.53607 1.46151 1.51802 0.92945 0.95665 0.96856 0.96768 0.92422 0.84699 0.95811 0.91550 0.91316 0.91569 0.91609 0.91781 0.91810 0.91823 0.93465 0.93657 0.77764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 11 N -0.69 -12.60 6.50 -113.78 -0.74 -13.34 16 12 C 0.07 0.98 4.84 -3.83 -0.02 0.97 16 13 C -0.08 -1.02 2.81 -89.50 -0.25 -1.28 16 14 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 15 C -0.12 -1.37 6.21 -25.07 -0.16 -1.53 16 16 C -0.13 -1.33 6.91 -24.74 -0.17 -1.50 16 17 C -0.11 -1.15 6.22 -25.07 -0.16 -1.30 16 18 C -0.09 -0.98 2.84 -89.50 -0.25 -1.24 16 19 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 20 C 0.08 0.82 6.09 37.16 0.23 1.04 16 21 O -0.58 -5.72 13.51 -35.23 -0.48 -6.20 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.33 5.88 7.07 -39.29 -0.28 5.60 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.85 6.40 -51.93 -0.33 0.52 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.63 7.76 -51.93 -0.40 0.23 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.40 8.00 -51.93 -0.42 -0.01 16 38 H 0.38 2.01 9.12 45.56 0.42 2.42 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -31.38 304.82 -8.27 -39.64 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.00 Total: 1.65 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.36 Total: -16.72 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.00 Total: -39.83 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.48 Total: -6.20 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.38 -8.27 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.553 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds