Wall clock time and date at job start Mon Mar 30 2020 03:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48497 * 109.46975 * 240.00112 * 3 2 1 5 5 H 1.48498 * 109.46936 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46825 * 120.00322 * 3 2 1 7 7 C 1.37876 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46725 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.46899 * 110.99963 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47137 * 180.02562 * 12 11 10 14 14 H 1.09002 * 110.02241 * 53.60430 * 13 12 11 15 15 C 1.54271 * 110.03232 * 292.16324 * 13 12 11 16 16 C 1.54889 * 104.19476 * 264.33039 * 15 13 12 17 17 C 1.54893 * 102.74761 * 322.05351 * 16 15 13 18 18 C 1.53877 * 110.03208 * 174.99827 * 13 12 11 19 19 H 1.08997 * 110.03315 * 359.95186 * 18 13 12 20 20 C 1.52997 * 110.03157 * 238.56541 * 18 13 12 21 21 O 1.42905 * 109.47264 * 175.00032 * 20 18 13 22 22 H 0.97000 * 119.99790 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47265 * 60.00344 * 9 7 2 24 24 H 1.08999 * 109.47219 * 299.99513 * 9 7 2 25 25 H 1.09006 * 109.46609 * 60.00419 * 10 9 7 26 26 H 1.08995 * 109.47750 * 300.00415 * 10 9 7 27 27 H 1.00897 * 110.99649 * 303.95710 * 11 10 9 28 28 H 1.09001 * 109.47249 * 59.99944 * 12 11 10 29 29 H 1.09001 * 109.46799 * 300.00340 * 12 11 10 30 30 H 1.09000 * 110.48075 * 23.00290 * 15 13 12 31 31 H 1.08993 * 110.49004 * 145.64543 * 15 13 12 32 32 H 1.08991 * 110.76267 * 80.37216 * 16 15 13 33 33 H 1.09006 * 110.75418 * 203.74642 * 16 15 13 34 34 H 1.09000 * 110.48408 * 279.26763 * 17 16 15 35 35 H 1.08997 * 110.48772 * 156.62814 * 17 16 15 36 36 H 1.09001 * 109.47289 * 54.99865 * 20 18 13 37 37 H 1.09004 * 109.47261 * 295.00121 * 20 18 13 38 38 H 0.96691 * 114.00079 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 7 1.5106 -4.9343 -0.0012 12 6 2.4350 -6.0760 -0.0018 13 6 1.6349 -7.3800 -0.0018 14 1 0.9215 -7.3801 -0.8259 15 6 0.8930 -7.5448 1.3408 16 6 1.8335 -8.4380 2.1873 17 6 2.3901 -9.4358 1.1415 18 6 2.5868 -8.5824 -0.1284 19 1 3.6186 -8.2368 -0.1908 20 6 2.2330 -9.4023 -1.3708 21 8 3.1935 -10.4465 -1.5419 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8724 -3.6048 0.8878 26 1 2.8712 -3.6041 -0.8921 27 1 0.8750 -4.9844 0.7808 28 1 3.0637 -6.0349 0.8877 29 1 3.0624 -6.0350 -0.8922 30 1 0.7530 -6.5761 1.8205 31 1 -0.0667 -8.0383 1.1882 32 1 2.6385 -7.8468 2.6237 33 1 1.2742 -8.9625 2.9621 34 1 1.6720 -10.2348 0.9568 35 1 3.3424 -9.8473 1.4759 36 1 2.2402 -8.7548 -2.2476 37 1 1.2411 -9.8374 -1.2487 38 1 3.0310 -11.0080 -2.3121 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084315550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:27 Heat of formation + Delta-G solvation = -105.690480 kcal Electronic energy + Delta-G solvation = -15708.438479 eV Core-core repulsion = 13162.286189 eV Total energy + Delta-G solvation = -2546.152290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19847 -37.61613 -36.69064 -34.93438 -32.08893 -31.02502 -29.46476 -26.70378 -25.53696 -23.69311 -22.51441 -21.16291 -20.35152 -18.49793 -18.08900 -17.32304 -16.53536 -16.34792 -16.01546 -15.61292 -15.19294 -14.76389 -14.48144 -14.14855 -13.76875 -13.63328 -13.07193 -12.98149 -12.80686 -12.55894 -12.12142 -12.01653 -11.86689 -11.83438 -11.53386 -11.50474 -11.43001 -11.36320 -11.14123 -10.78941 -10.56483 -9.29267 -8.20778 -6.32676 1.40162 1.43589 1.51618 2.40361 3.12232 3.12654 3.53392 3.66267 3.70182 4.01240 4.26073 4.34509 4.39787 4.50424 4.53380 4.57597 4.61105 4.64447 4.75957 4.80319 4.88427 4.94496 5.04621 5.09035 5.14840 5.20447 5.35646 5.42814 5.44955 5.52489 5.66156 5.77672 6.13044 6.26920 6.54383 6.84113 6.93138 7.36633 8.91245 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050728 B = 0.004162 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.826890 B = 6725.865579 C = 6935.559105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.696 5.696 12 C 0.069 3.931 13 C -0.077 4.077 14 H 0.079 0.921 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.106 4.106 18 C -0.088 4.088 19 H 0.067 0.933 20 C 0.084 3.916 21 O -0.591 6.591 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.008 1.008 25 H 0.016 0.984 26 H 0.056 0.944 27 H 0.338 0.662 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -20.114 0.447 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.328 5.328 12 C -0.061 4.061 13 C -0.095 4.095 14 H 0.097 0.903 15 C -0.159 4.159 16 C -0.162 4.162 17 C -0.143 4.143 18 C -0.107 4.107 19 H 0.085 0.915 20 C 0.007 3.993 21 O -0.400 6.400 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.010 0.990 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.157 0.843 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.809 -19.743 0.291 20.109 hybrid contribution 0.267 0.937 0.309 1.022 sum 4.076 -18.806 0.600 19.252 Atomic orbital electron populations 1.70102 1.07825 1.27921 1.51259 1.25980 0.95784 1.03375 0.94511 0.85465 0.78253 0.77907 0.79198 1.19156 1.20664 1.19142 1.21592 0.93526 0.92316 1.51221 0.92223 1.18919 0.94287 0.92257 0.95089 1.21783 0.95636 0.88626 0.98580 1.60553 1.20401 1.01752 1.50077 1.22037 0.94140 0.89995 0.99881 1.21661 0.96783 0.92092 0.99006 0.90290 1.22434 0.98952 0.99727 0.94753 1.22526 0.98679 0.97249 0.97724 1.22298 1.01007 0.97287 0.93727 1.21754 0.99424 0.94334 0.95164 0.91500 1.22296 0.91432 0.88800 0.96783 1.86425 1.53845 1.46449 1.53233 0.92678 0.98661 0.99003 0.96547 0.92523 0.84294 0.95655 0.91793 0.92578 0.90383 0.92312 0.90352 0.90904 0.91879 0.93537 0.92340 0.75494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.09 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.75 5.23 29.85 0.16 1.90 16 10 C 0.08 3.61 5.62 86.30 0.49 4.10 16 11 N -0.70 -25.37 6.50 -513.88 -3.34 -28.71 16 12 C 0.07 2.00 4.84 86.30 0.42 2.42 16 13 C -0.08 -1.79 2.81 -10.07 -0.03 -1.82 16 14 H 0.08 1.90 7.67 -2.39 -0.02 1.88 16 15 C -0.12 -2.60 6.21 31.67 0.20 -2.41 16 16 C -0.12 -2.37 6.91 31.89 0.22 -2.15 16 17 C -0.11 -1.99 6.22 31.67 0.20 -1.79 16 18 C -0.09 -1.83 2.84 -10.07 -0.03 -1.86 16 19 H 0.07 1.57 7.67 -2.39 -0.02 1.55 16 20 C 0.08 1.52 6.09 71.98 0.44 1.96 16 21 O -0.59 -10.60 13.51 -148.98 -2.01 -12.61 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.34 11.96 7.07 -89.70 -0.63 11.33 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.35 6.40 -2.39 -0.02 1.34 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.07 1.25 7.76 -2.39 -0.02 1.23 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.90 8.00 -2.38 -0.02 0.88 16 38 H 0.40 3.40 9.12 -74.06 -0.68 2.72 16 Total: -1.00 -66.56 304.82 -0.58 -67.14 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -0.29 Total: 15.46 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 2.75 Total: -30.79 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -3.06 Total: -85.89 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -2.01 Total: -12.61 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.56 -0.58 -67.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.550 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds