Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47350 * 269.99867 * 3 2 1 5 5 H 1.48497 * 109.47092 * 30.00132 * 3 2 1 6 6 H 1.48503 * 109.47337 * 149.99896 * 3 2 1 7 7 C 1.37876 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00303 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99770 * 12 11 10 14 14 C 1.53005 * 109.46867 * 294.99558 * 12 11 10 15 15 C 1.53008 * 109.46774 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46995 * 60.00238 * 15 14 12 17 17 C 1.53000 * 109.47320 * 299.99845 * 16 15 14 18 18 C 1.53002 * 109.46776 * 174.99873 * 12 11 10 19 19 H 1.09000 * 109.47312 * 60.00037 * 18 12 11 20 20 C 1.52991 * 109.47237 * 299.99687 * 18 12 11 21 21 O 1.42906 * 109.47126 * 175.00150 * 20 18 12 22 22 H 0.97003 * 119.99678 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46796 * 60.00364 * 9 7 2 24 24 H 1.09002 * 109.47497 * 300.00158 * 9 7 2 25 25 H 1.00899 * 110.99995 * 56.04682 * 10 9 7 26 26 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 27 27 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 28 28 H 1.09000 * 109.47443 * 300.00098 * 14 12 11 29 29 H 1.09001 * 109.47099 * 60.00379 * 14 12 11 30 30 H 1.08998 * 109.46504 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.47044 * 300.00132 * 15 14 12 32 32 H 1.09000 * 109.46863 * 59.99768 * 16 15 14 33 33 H 1.08996 * 109.46657 * 179.97438 * 16 15 14 34 34 H 1.08993 * 109.47427 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46578 * 300.00351 * 17 16 15 36 36 H 1.08997 * 109.47373 * 295.00329 * 20 18 12 37 37 H 1.08999 * 109.47287 * 54.99921 * 20 18 12 38 38 H 0.96702 * 113.99787 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5792 0.0010 11 6 5.4697 -2.6183 0.0022 12 6 5.9409 -4.0740 0.0014 13 1 5.4927 -4.6005 -0.8411 14 6 5.5170 -4.7479 1.3079 15 6 5.9888 -6.2034 1.3074 16 6 7.5132 -6.2453 1.1831 17 6 7.9372 -5.5713 -0.1234 18 6 7.4653 -4.1164 -0.1232 19 1 7.9135 -3.5898 0.7194 20 6 7.8892 -3.4424 -1.4296 21 8 9.3154 -3.3779 -1.4914 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8753 -0.6805 -0.8888 25 1 3.6260 -3.0953 -0.7806 26 1 5.8459 -2.1147 0.8926 27 1 5.8472 -2.1141 -0.8874 28 1 5.9652 -4.2214 2.1505 29 1 4.4310 -4.7177 1.3966 30 1 5.6872 -6.6834 2.2383 31 1 5.5410 -6.7303 0.4647 32 1 7.9610 -5.7185 2.0257 33 1 7.8493 -7.2822 1.1832 34 1 9.0231 -5.6007 -0.2117 35 1 7.4893 -6.0982 -0.9659 36 1 7.5146 -4.0200 -2.2746 37 1 7.4779 -2.4337 -1.4682 38 1 9.6559 -2.9619 -2.2952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084319939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -81.505321 kcal Electronic energy + Delta-G solvation = -16196.450317 eV Core-core repulsion = 13651.346775 eV Total energy + Delta-G solvation = -2545.103543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31292 -36.45480 -35.28573 -32.66083 -31.58172 -30.71519 -27.44182 -25.48961 -24.12199 -21.54029 -20.97114 -20.65615 -19.66517 -17.35482 -16.79049 -15.38363 -15.13739 -14.69598 -14.45386 -14.24618 -13.91651 -13.55304 -13.36747 -12.76638 -12.38375 -12.17045 -12.07994 -11.72944 -11.55741 -11.42782 -10.94041 -10.80916 -10.70349 -10.56729 -10.25885 -10.10870 -9.92954 -9.80772 -9.60526 -9.25423 -8.60236 -7.44088 -6.06463 -4.04248 3.27346 3.35201 3.38188 4.14739 4.41438 4.67097 4.74060 4.93214 5.11300 5.18516 5.25320 5.27317 5.37813 5.52079 5.58102 5.61128 5.68305 5.76154 5.78348 5.92163 6.00707 6.09544 6.20052 6.27809 6.29109 6.35319 6.40578 6.67191 6.71217 6.78291 7.01691 7.53009 7.61399 7.90044 8.34487 8.65159 9.01764 9.55746 11.06906 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.005854 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.484845 B = 4781.980482 C = 5409.793559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.678 5.678 11 C 0.056 3.944 12 C -0.075 4.075 13 H 0.068 0.932 14 C -0.104 4.104 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.107 4.107 18 C -0.080 4.080 19 H 0.076 0.924 20 C 0.073 3.927 21 O -0.575 6.575 22 H 0.264 0.736 23 H 0.026 0.974 24 H -0.023 1.023 25 H 0.334 0.666 26 H 0.064 0.936 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.687 -9.360 -1.678 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.308 5.308 11 C -0.074 4.074 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.142 4.142 15 C -0.159 4.159 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.099 4.099 19 H 0.094 0.906 20 C -0.004 4.004 21 O -0.380 6.380 22 H 0.073 0.927 23 H 0.044 0.956 24 H -0.005 1.005 25 H 0.151 0.849 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 16.405 -9.593 -0.397 19.008 hybrid contribution 0.562 1.593 -1.526 2.277 sum 16.967 -8.000 -1.923 18.857 Atomic orbital electron populations 1.69903 1.06156 1.26862 1.51050 1.24910 0.94749 0.98949 0.94759 0.86819 0.80348 0.83887 0.78403 1.20397 1.21131 1.19198 1.21074 0.88985 0.94795 1.50503 0.90286 1.19998 0.96601 0.85147 0.94636 1.60451 1.04519 1.16529 1.49277 1.22102 0.90666 0.94907 0.99682 1.21115 0.92842 0.96416 0.99053 0.91388 1.21456 1.02451 0.93884 0.96373 1.21591 0.95237 0.97657 1.01404 1.21551 0.96427 0.99882 0.97830 1.21480 1.00732 0.94696 0.97560 1.21140 0.95660 0.96223 0.96892 0.90595 1.22423 0.80464 0.99659 0.97848 1.86457 1.21480 1.84119 1.45970 0.92660 0.95644 1.00504 0.84942 0.91759 0.96271 0.92432 0.89952 0.92324 0.92261 0.92210 0.92540 0.91703 0.92430 0.93867 0.93014 0.77853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -14.83 9.87 -34.44 -0.34 -15.17 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 C 0.16 4.01 4.51 -4.97 -0.02 3.99 16 10 N -0.68 -13.84 5.94 -115.05 -0.68 -14.52 16 11 C 0.06 0.93 4.87 -3.82 -0.02 0.91 16 12 C -0.08 -1.02 1.86 -90.62 -0.17 -1.19 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.10 -1.42 5.09 -26.72 -0.14 -1.55 16 15 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 16 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 17 C -0.11 -1.20 5.10 -26.75 -0.14 -1.33 16 18 C -0.08 -0.98 1.95 -90.65 -0.18 -1.16 16 19 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 20 C 0.07 0.85 6.22 37.15 0.23 1.08 16 21 O -0.58 -6.43 13.19 -35.23 -0.46 -6.89 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 24 H -0.02 -0.55 7.57 -51.93 -0.39 -0.94 16 25 H 0.33 6.59 8.72 -39.29 -0.34 6.25 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.02 0.31 6.07 -51.93 -0.32 0.00 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.62 6.07 -51.93 -0.32 0.31 16 38 H 0.38 2.54 9.12 45.56 0.42 2.95 16 LS Contribution 296.21 15.07 4.46 4.46 Total: -1.00 -31.17 296.21 -7.71 -38.88 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.95 Total: 3.53 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.18 Total: -15.50 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.09 Total: -41.57 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.46 Total: -6.89 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.17 -7.71 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084319939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.625 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds