Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47350 * 269.99867 * 3 2 1 5 5 H 1.48497 * 109.47092 * 30.00132 * 3 2 1 6 6 H 1.48503 * 109.47337 * 149.99896 * 3 2 1 7 7 C 1.37876 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00303 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99770 * 12 11 10 14 14 C 1.53005 * 109.46867 * 294.99558 * 12 11 10 15 15 C 1.53008 * 109.46774 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46995 * 60.00238 * 15 14 12 17 17 C 1.53000 * 109.47320 * 299.99845 * 16 15 14 18 18 C 1.53002 * 109.46776 * 174.99873 * 12 11 10 19 19 H 1.09000 * 109.47312 * 60.00037 * 18 12 11 20 20 C 1.52991 * 109.47237 * 299.99687 * 18 12 11 21 21 O 1.42906 * 109.47126 * 175.00150 * 20 18 12 22 22 H 0.97003 * 119.99678 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46796 * 60.00364 * 9 7 2 24 24 H 1.09002 * 109.47497 * 300.00158 * 9 7 2 25 25 H 1.00899 * 110.99995 * 56.04682 * 10 9 7 26 26 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 27 27 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 28 28 H 1.09000 * 109.47443 * 300.00098 * 14 12 11 29 29 H 1.09001 * 109.47099 * 60.00379 * 14 12 11 30 30 H 1.08998 * 109.46504 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.47044 * 300.00132 * 15 14 12 32 32 H 1.09000 * 109.46863 * 59.99768 * 16 15 14 33 33 H 1.08996 * 109.46657 * 179.97438 * 16 15 14 34 34 H 1.08993 * 109.47427 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46578 * 300.00351 * 17 16 15 36 36 H 1.08997 * 109.47373 * 295.00329 * 20 18 12 37 37 H 1.08999 * 109.47287 * 54.99921 * 20 18 12 38 38 H 0.96702 * 113.99787 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5792 0.0010 11 6 5.4697 -2.6183 0.0022 12 6 5.9409 -4.0740 0.0014 13 1 5.4927 -4.6005 -0.8411 14 6 5.5170 -4.7479 1.3079 15 6 5.9888 -6.2034 1.3074 16 6 7.5132 -6.2453 1.1831 17 6 7.9372 -5.5713 -0.1234 18 6 7.4653 -4.1164 -0.1232 19 1 7.9135 -3.5898 0.7194 20 6 7.8892 -3.4424 -1.4296 21 8 9.3154 -3.3779 -1.4914 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8753 -0.6805 -0.8888 25 1 3.6260 -3.0953 -0.7806 26 1 5.8459 -2.1147 0.8926 27 1 5.8472 -2.1141 -0.8874 28 1 5.9652 -4.2214 2.1505 29 1 4.4310 -4.7177 1.3966 30 1 5.6872 -6.6834 2.2383 31 1 5.5410 -6.7303 0.4647 32 1 7.9610 -5.7185 2.0257 33 1 7.8493 -7.2822 1.1832 34 1 9.0231 -5.6007 -0.2117 35 1 7.4893 -6.0982 -0.9659 36 1 7.5146 -4.0200 -2.2746 37 1 7.4779 -2.4337 -1.4682 38 1 9.6559 -2.9619 -2.2952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084319939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -104.650018 kcal Electronic energy + Delta-G solvation = -16197.453947 eV Core-core repulsion = 13651.346775 eV Total energy + Delta-G solvation = -2546.107172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34777 -37.41733 -36.79802 -34.64901 -32.77204 -31.93913 -29.20659 -26.55083 -25.46322 -23.22145 -22.31902 -21.69215 -20.68775 -18.95185 -18.22819 -16.86751 -16.21360 -16.09293 -15.84135 -15.51461 -15.14124 -14.94254 -14.59566 -14.33926 -13.88383 -13.60466 -13.33202 -13.01663 -12.87457 -12.59538 -12.43673 -12.22286 -11.90171 -11.82793 -11.77290 -11.52180 -11.30643 -11.02411 -10.91601 -10.81544 -10.61019 -9.08882 -8.31387 -6.35766 1.32719 1.35407 1.46513 2.32699 3.02600 3.28732 3.47837 3.72081 3.98120 4.00771 4.08688 4.30168 4.42423 4.50846 4.53425 4.62682 4.66504 4.71397 4.74884 4.82589 4.86575 4.88412 5.05208 5.08284 5.23651 5.31324 5.32645 5.37162 5.41277 5.52129 5.59633 5.64614 5.95456 6.55931 6.66058 6.77033 6.89947 7.29461 8.85416 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.005854 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.484845 B = 4781.980482 C = 5409.793559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.038 0.962 9 C 0.175 3.825 10 N -0.685 5.685 11 C 0.058 3.942 12 C -0.065 4.065 13 H 0.072 0.928 14 C -0.104 4.104 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.102 4.102 18 C -0.077 4.077 19 H 0.065 0.935 20 C 0.076 3.924 21 O -0.588 6.588 22 H 0.268 0.732 23 H 0.021 0.979 24 H -0.015 1.015 25 H 0.336 0.664 26 H 0.057 0.943 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.954 -9.245 -2.143 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.056 0.944 9 C 0.046 3.954 10 N -0.315 5.315 11 C -0.071 4.071 12 C -0.084 4.084 13 H 0.090 0.910 14 C -0.141 4.141 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.140 4.140 18 C -0.096 4.096 19 H 0.084 0.916 20 C -0.002 4.002 21 O -0.396 6.396 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.002 0.998 25 H 0.154 0.846 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 18.700 -9.495 -0.876 20.990 hybrid contribution -0.170 1.475 -1.382 2.029 sum 18.530 -8.019 -2.258 20.317 Atomic orbital electron populations 1.70054 1.08147 1.28227 1.52333 1.25876 0.95637 1.03279 0.94156 0.85661 0.79272 0.78450 0.79202 1.18989 1.20563 1.17659 1.21350 0.91395 0.93465 1.50397 0.94353 1.19739 0.93696 0.87431 0.94524 1.60334 1.07168 1.14313 1.49700 1.22171 0.87961 0.97172 0.99799 1.21011 0.94025 0.94272 0.99124 0.90995 1.21412 1.00813 0.95657 0.96251 1.21548 0.96019 0.95872 1.01975 1.21535 0.95467 1.00867 0.97505 1.21440 1.00731 0.93758 0.98048 1.21072 0.94146 0.97257 0.97135 0.91631 1.22332 0.80894 0.99306 0.97630 1.86408 1.21046 1.84500 1.47598 0.92331 0.96049 0.99788 0.84641 0.92410 0.95210 0.93007 0.92444 0.91660 0.91897 0.92382 0.90859 0.91608 0.91835 0.92818 0.93676 0.75634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 2 C 0.01 0.47 5.47 84.65 0.46 0.94 16 3 Si 0.95 44.44 27.47 68.60 1.88 46.33 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 7 C -0.53 -30.97 9.87 25.60 0.25 -30.71 16 8 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 9 C 0.17 8.46 4.51 85.56 0.39 8.85 16 10 N -0.68 -27.87 5.94 -517.91 -3.08 -30.95 16 11 C 0.06 1.86 4.87 86.30 0.42 2.28 16 12 C -0.07 -1.69 1.86 -10.79 -0.02 -1.72 16 13 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.10 -2.76 5.09 30.60 0.16 -2.60 16 15 C -0.12 -2.47 5.92 30.60 0.18 -2.29 16 16 C -0.12 -2.19 5.92 30.60 0.18 -2.01 16 17 C -0.10 -2.03 5.10 30.58 0.16 -1.88 16 18 C -0.08 -1.75 1.95 -10.81 -0.02 -1.77 16 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 20 C 0.08 1.58 6.22 71.98 0.45 2.03 16 21 O -0.59 -11.68 13.19 -148.98 -1.97 -13.64 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 24 H -0.02 -0.73 7.57 -2.39 -0.02 -0.74 16 25 H 0.34 13.33 8.72 -89.69 -0.78 12.55 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.03 0.91 6.07 -2.39 -0.01 0.90 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.80 7.75 -2.39 -0.02 1.79 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.33 7.82 -2.39 -0.02 1.31 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.99 6.07 -2.39 -0.01 0.98 16 38 H 0.39 4.31 9.12 -74.06 -0.68 3.63 16 Total: -1.00 -66.86 296.21 -0.74 -67.61 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.48 Total: 18.87 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 2.60 Total: -28.88 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.78 Total: -90.29 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.97 Total: -13.64 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -66.86 -0.74 -67.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084319939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.044 kcal (2) G-P(sol) polarization free energy of solvation -66.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds