Wall clock time and date at job start Mon Mar 30 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.42895 * 113.99914 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46995 * 180.02562 * 12 11 10 14 14 H 1.08995 * 110.02322 * 54.93125 * 13 12 11 15 15 C 1.54274 * 110.03091 * 293.54146 * 13 12 11 16 16 C 1.54887 * 104.19875 * 217.10901 * 15 13 12 17 17 C 1.54893 * 102.74911 * 37.94073 * 16 15 13 18 18 C 1.53881 * 110.03340 * 176.38064 * 13 12 11 19 19 H 1.08991 * 110.03155 * 238.56545 * 18 13 12 20 20 C 1.53002 * 110.03126 * 359.97438 * 18 13 12 21 21 N 1.46899 * 109.47136 * 185.00307 * 20 18 13 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.09010 * 109.47060 * 300.00236 * 12 11 10 28 28 H 1.09001 * 109.47449 * 59.99949 * 12 11 10 29 29 H 1.09007 * 110.48411 * 335.78960 * 15 13 12 30 30 H 1.09000 * 110.47974 * 98.29575 * 15 13 12 31 31 H 1.09001 * 110.75695 * 156.25823 * 16 15 13 32 32 H 1.09000 * 110.75332 * 279.63266 * 16 15 13 33 33 H 1.08999 * 110.48421 * 80.73783 * 17 16 15 34 34 H 1.08997 * 110.48392 * 203.24483 * 17 16 15 35 35 H 1.09005 * 109.46666 * 304.99891 * 20 18 13 36 36 H 1.08997 * 109.47156 * 65.00023 * 20 18 13 37 37 H 1.00896 * 110.99738 * 179.97438 * 21 20 18 38 38 H 1.00896 * 110.99971 * 303.95103 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5307 -4.8997 0.0001 12 6 2.3706 -6.0557 -0.0005 13 6 1.5034 -7.3162 -0.0004 14 1 0.8068 -7.2900 -0.8383 15 6 0.7274 -7.4236 1.3286 16 6 0.7178 -8.9406 1.6414 17 6 2.1269 -9.3928 1.1841 18 6 2.3932 -8.5683 -0.0922 19 1 2.1285 -9.1505 -0.9748 20 6 3.8666 -8.1607 -0.1555 21 7 4.6965 -9.3549 -0.3631 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 2.9993 -6.0477 -0.8910 28 1 3.0006 -6.0476 0.8890 29 1 1.2430 -6.8748 2.1168 30 1 -0.2895 -7.0505 1.2077 31 1 0.5840 -9.1140 2.7092 32 1 -0.0564 -9.4486 1.0664 33 1 2.8684 -9.1621 1.9490 34 1 2.1310 -10.4594 0.9595 35 1 4.0161 -7.4661 -0.9821 36 1 4.1507 -7.6789 0.7800 37 1 5.6747 -9.1118 -0.4089 38 1 4.5276 -10.0421 0.3561 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084322595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:19 Heat of formation + Delta-G solvation = -98.844953 kcal Electronic energy + Delta-G solvation = -15878.894271 eV Core-core repulsion = 13333.038826 eV Total energy + Delta-G solvation = -2545.855446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40414 -38.33970 -35.38249 -34.96078 -32.47068 -30.93662 -29.51377 -26.77702 -25.17455 -24.59947 -22.85711 -21.62756 -19.67102 -18.71936 -17.66269 -17.00842 -16.82148 -16.55477 -16.27432 -15.83727 -15.15223 -14.99418 -14.41144 -14.28050 -13.90640 -13.57749 -13.54584 -12.96104 -12.77577 -12.45138 -12.27659 -12.00747 -11.90717 -11.68077 -11.50988 -11.46546 -11.43286 -11.39319 -11.24431 -10.64674 -10.39787 -9.57904 -8.24577 -6.38328 1.40230 1.44564 1.52645 2.36962 2.87821 3.09041 3.49851 3.59567 3.79117 3.91533 4.26739 4.31955 4.37246 4.37900 4.42114 4.45190 4.51916 4.62102 4.73713 4.79479 4.88056 4.89137 4.92074 5.08302 5.09917 5.23767 5.32872 5.37742 5.44563 5.48415 5.55689 5.71654 6.10081 6.22353 6.45219 6.62025 6.77303 7.31606 8.88390 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045118 B = 0.004561 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.439319 B = 6137.514721 C = 6592.141831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.281 1.281 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.413 6.413 12 C 0.061 3.939 13 C -0.086 4.086 14 H 0.069 0.931 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.076 4.076 19 H 0.082 0.918 20 C 0.061 3.939 21 N -0.854 5.854 22 H 0.266 0.734 23 H -0.007 1.007 24 H -0.007 1.007 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.349 0.651 38 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -19.144 2.460 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.086 0.914 9 C -0.009 4.009 10 C 0.010 3.990 11 O -0.334 6.334 12 C -0.015 4.015 13 C -0.105 4.105 14 H 0.087 0.913 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.095 4.095 19 H 0.101 0.899 20 C -0.069 4.069 21 N -0.385 5.385 22 H 0.075 0.925 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.162 0.838 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.856 -19.123 1.769 20.391 hybrid contribution 0.624 1.433 0.813 1.762 sum 7.480 -17.690 2.582 19.379 Atomic orbital electron populations 1.70125 1.08082 1.28190 1.50767 1.26063 0.95820 1.03700 0.94185 0.85348 0.78138 0.77229 0.79399 1.20668 1.18839 1.18871 1.21449 0.93723 0.91470 1.51996 0.91437 1.18928 0.94620 0.91961 0.95386 1.22446 0.94753 0.82915 0.98927 1.87877 1.35599 1.14481 1.95409 1.22928 0.93214 0.85295 1.00111 1.21783 0.97091 0.92495 0.99101 0.91258 1.22353 0.99654 0.97432 0.96071 1.22491 0.97598 0.94064 1.01567 1.22416 0.96779 0.99983 0.95856 1.21714 0.93453 0.94491 0.99832 0.89934 1.21996 0.92829 0.92497 0.99611 1.58712 1.11090 1.13285 1.55435 0.92504 0.98851 0.98886 0.93839 0.93859 0.92914 0.93078 0.92596 0.92840 0.90612 0.90890 0.91483 0.89815 0.91585 0.95203 0.83843 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.55 -32.04 9.11 25.60 0.23 -31.80 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.03 1.61 5.34 29.85 0.16 1.77 16 10 C 0.09 3.89 5.88 71.98 0.42 4.32 16 11 O -0.41 -17.43 10.16 -148.98 -1.51 -18.95 16 12 C 0.06 1.88 4.03 71.98 0.29 2.17 16 13 C -0.09 -2.24 3.19 -10.07 -0.03 -2.27 16 14 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.12 -3.01 6.19 31.67 0.20 -2.81 16 16 C -0.12 -2.21 6.91 31.89 0.22 -1.99 16 17 C -0.11 -1.82 5.56 31.67 0.18 -1.65 16 18 C -0.08 -1.51 3.15 -10.07 -0.03 -1.54 16 19 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 20 C 0.06 1.18 4.96 86.30 0.43 1.60 16 21 N -0.85 -13.35 9.62 -186.71 -1.80 -15.15 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.54 6.38 -2.38 -0.02 1.52 16 28 H 0.05 1.48 7.00 -2.39 -0.02 1.46 16 29 H 0.06 1.53 7.78 -2.38 -0.02 1.52 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.03 7.76 -2.39 -0.02 1.01 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.42 6.33 -2.38 -0.02 1.41 16 36 H 0.03 0.58 7.00 -2.39 -0.02 0.56 16 37 H 0.35 4.50 9.08 -89.70 -0.81 3.69 16 38 H 0.35 4.36 8.23 -89.70 -0.74 3.62 16 Total: -1.00 -66.87 300.76 1.00 -65.87 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -0.52 Total: 11.38 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 2.52 Total: -31.71 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -1.51 Total: -72.94 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.51 Total: -18.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.87 1.00 -65.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084322595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.976 kcal (2) G-P(sol) polarization free energy of solvation -66.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds