Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00146 * 2 1 4 4 C 1.50700 * 109.47140 * 293.95649 * 3 2 1 5 5 O 1.21280 * 119.99824 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00395 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00128 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.46955 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00100 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00200 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00498 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99619 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47272 * 89.99889 * 12 10 8 14 14 H 1.48499 * 109.46979 * 209.99698 * 12 10 8 15 15 H 1.48498 * 109.47088 * 329.99887 * 12 10 8 16 16 C 1.46903 * 111.00000 * 123.95374 * 2 1 3 17 17 C 1.53506 * 114.17334 * 56.04402 * 16 2 1 18 18 N 1.47481 * 87.93471 * 139.67202 * 17 16 2 19 19 C 1.47488 * 87.83530 * 332.99146 * 18 17 16 20 20 H 1.09002 * 109.47004 * 296.04497 * 1 2 3 21 21 H 1.08997 * 109.47132 * 56.04704 * 1 2 3 22 22 H 1.09003 * 109.46835 * 176.04935 * 1 2 3 23 23 H 1.08999 * 109.47246 * 53.95216 * 3 2 1 24 24 H 1.09002 * 109.47502 * 173.95082 * 3 2 1 25 25 H 0.96998 * 119.99793 * 0.02562 * 6 4 3 26 26 H 1.08996 * 109.47291 * 299.99667 * 7 6 4 27 27 H 1.08997 * 109.47255 * 60.00446 * 7 6 4 28 28 H 0.97000 * 120.00276 * 180.02562 * 11 10 8 29 29 H 1.09007 * 113.38504 * 282.96589 * 16 2 1 30 30 H 1.09007 * 113.47650 * 24.90984 * 17 16 2 31 31 H 1.08997 * 113.53552 * 254.44705 * 17 16 2 32 32 H 1.00901 * 110.99857 * 84.68111 * 18 17 16 33 33 H 1.08997 * 113.47731 * 141.77388 * 19 18 17 34 34 H 1.09001 * 113.47471 * 272.24480 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0054 1.4453 -2.1410 6 7 2.0180 3.3201 -1.5233 7 6 1.6699 3.9768 -2.7858 8 6 2.2098 5.3837 -2.7858 9 1 2.7572 5.7521 -1.9307 10 6 2.0051 6.2008 -3.8774 11 7 2.4759 7.4287 -3.8772 12 14 1.0590 5.5634 -5.3567 13 1 -0.3869 5.8526 -5.1816 14 1 1.5526 6.2340 -6.5863 15 1 1.2594 4.0970 -5.4780 16 6 1.9955 -0.7660 1.1376 17 6 1.4904 -2.2139 1.2081 18 7 2.8538 -2.6138 1.6035 19 6 3.3518 -1.4340 0.8718 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 1.5611 1.9273 0.8309 24 1 3.0798 1.3444 0.1083 25 1 2.5233 3.8013 -0.8496 26 1 2.1049 3.4211 -3.6164 27 1 0.5857 4.0034 -2.8946 28 1 2.3316 8.0037 -4.6450 29 1 1.9409 -0.2278 2.0840 30 1 1.1836 -2.6143 0.2418 31 1 0.7466 -2.3779 1.9877 32 1 2.9883 -2.5059 2.5977 33 1 4.1855 -0.9361 1.3668 34 1 3.5416 -1.6263 -0.1842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085258007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = 13.052644 kcal Electronic energy + Delta-G solvation = -15672.152069 eV Core-core repulsion = 13027.608524 eV Total energy + Delta-G solvation = -2644.543545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27923 -38.88482 -35.53191 -34.19092 -32.37473 -29.20261 -27.42342 -27.02379 -25.67613 -23.51242 -21.78713 -20.23544 -19.84916 -17.32351 -16.76372 -16.34635 -15.85113 -15.44997 -14.76558 -14.51874 -14.30702 -13.71415 -13.34864 -12.90782 -12.82546 -12.66138 -12.45496 -12.29238 -11.91819 -11.63698 -11.28546 -11.02619 -10.75726 -10.66070 -9.97675 -9.51408 -9.31537 -8.89210 -8.78840 -8.38063 -8.12907 -6.22805 -4.25204 3.21631 3.26571 3.32733 3.41732 3.55557 3.89887 4.05061 4.29611 4.33199 4.64392 5.07657 5.12403 5.17411 5.28396 5.32858 5.37853 5.46516 5.55426 5.61199 5.62590 5.68012 5.93293 6.17789 6.74622 6.88021 6.92937 7.06520 7.07634 7.22923 7.38427 8.13082 8.50604 8.74179 8.94290 9.37456 10.89141 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.060563 B = 0.004948 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.219479 B = 5657.100878 C = 5861.084048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.507 5.507 3 C 0.034 3.966 4 C 0.501 3.499 5 O -0.541 6.541 6 N -0.708 5.708 7 C 0.222 3.778 8 C -0.544 4.544 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.893 5.893 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.260 1.260 16 C 0.002 3.998 17 C 0.026 3.974 18 N -0.650 5.650 19 C 0.027 3.973 20 H 0.017 0.983 21 H 0.093 0.907 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.395 0.605 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.268 0.732 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.333 0.667 33 H 0.068 0.932 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -14.503 11.887 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.097 4.097 4 C 0.286 3.714 5 O -0.419 6.419 6 N -0.357 5.357 7 C 0.100 3.900 8 C -0.582 4.582 9 H 0.097 0.903 10 C -0.126 4.126 11 N -0.530 5.530 12 Si 0.703 3.297 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.108 4.108 17 C -0.104 4.104 18 N -0.276 5.276 19 C -0.104 4.104 20 H 0.036 0.964 21 H 0.111 0.889 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.117 0.883 25 H 0.229 0.771 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.074 -15.712 10.279 18.806 hybrid contribution -0.729 1.534 0.895 1.919 sum -1.803 -14.178 11.174 18.142 Atomic orbital electron populations 1.22538 0.86400 1.02610 1.01347 1.61963 1.08867 1.12146 1.40141 1.22006 1.01812 0.89655 0.96226 1.20315 0.80430 0.82223 0.88482 1.90620 1.40293 1.64358 1.46603 1.46175 1.55848 1.12443 1.21230 1.19471 0.95818 0.93003 0.81736 1.21098 1.37288 0.95087 1.04746 0.90291 1.24798 0.94980 0.94534 0.98297 1.69878 1.45143 1.06893 1.31086 0.86811 0.80518 0.80142 0.82193 1.19878 1.20879 1.18454 1.24872 0.97818 0.95060 0.93093 1.23636 0.92386 0.91761 1.02637 1.65635 1.08241 1.41183 1.12529 1.23670 0.95283 0.89629 1.01792 0.96428 0.88871 0.91488 0.92338 0.88262 0.77132 0.95668 0.96255 0.92247 0.91400 0.87489 0.91481 0.85277 0.91390 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.98 60.06 0.54 0.78 16 2 N -0.51 -6.70 4.49 -236.00 -1.06 -7.76 16 3 C 0.03 0.47 5.44 -4.98 -0.03 0.44 16 4 C 0.50 9.35 7.52 -10.99 -0.08 9.27 16 5 O -0.54 -12.06 14.33 5.56 0.08 -11.98 16 6 N -0.71 -14.09 5.55 -61.48 -0.34 -14.43 16 7 C 0.22 5.43 4.50 -5.19 -0.02 5.41 16 8 C -0.54 -14.87 9.83 -34.44 -0.34 -15.21 16 9 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 10 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 11 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 12 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 16 C 0.00 0.02 3.45 -67.50 -0.23 -0.21 16 17 C 0.03 0.24 7.20 -7.54 -0.05 0.19 16 18 N -0.65 -6.16 8.76 -122.65 -1.07 -7.23 16 19 C 0.03 0.26 8.42 -7.53 -0.06 0.20 16 20 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 21 H 0.09 1.50 5.82 -51.93 -0.30 1.20 16 22 H 0.07 0.77 7.08 -51.93 -0.37 0.40 16 23 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 24 H 0.10 1.16 8.07 -51.93 -0.42 0.75 16 25 H 0.40 6.87 8.32 -40.82 -0.34 6.53 16 26 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 27 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.11 1.14 7.89 -51.92 -0.41 0.73 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.33 2.48 8.85 -39.29 -0.35 2.13 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 281.89 15.07 4.25 4.25 Total: -1.00 -31.78 281.89 -7.49 -39.26 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.07 Total: 3.85 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.38 Total: 2.96 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -1.70 Total: -55.09 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.78 -7.49 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085258007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.317 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds