Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00146 * 2 1 4 4 C 1.50700 * 109.47140 * 293.95649 * 3 2 1 5 5 O 1.21280 * 119.99824 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00395 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00128 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.46955 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00100 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00200 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00498 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99619 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47272 * 89.99889 * 12 10 8 14 14 H 1.48499 * 109.46979 * 209.99698 * 12 10 8 15 15 H 1.48498 * 109.47088 * 329.99887 * 12 10 8 16 16 C 1.46903 * 111.00000 * 123.95374 * 2 1 3 17 17 C 1.53506 * 114.17334 * 56.04402 * 16 2 1 18 18 N 1.47481 * 87.93471 * 139.67202 * 17 16 2 19 19 C 1.47488 * 87.83530 * 332.99146 * 18 17 16 20 20 H 1.09002 * 109.47004 * 296.04497 * 1 2 3 21 21 H 1.08997 * 109.47132 * 56.04704 * 1 2 3 22 22 H 1.09003 * 109.46835 * 176.04935 * 1 2 3 23 23 H 1.08999 * 109.47246 * 53.95216 * 3 2 1 24 24 H 1.09002 * 109.47502 * 173.95082 * 3 2 1 25 25 H 0.96998 * 119.99793 * 0.02562 * 6 4 3 26 26 H 1.08996 * 109.47291 * 299.99667 * 7 6 4 27 27 H 1.08997 * 109.47255 * 60.00446 * 7 6 4 28 28 H 0.97000 * 120.00276 * 180.02562 * 11 10 8 29 29 H 1.09007 * 113.38504 * 282.96589 * 16 2 1 30 30 H 1.09007 * 113.47650 * 24.90984 * 17 16 2 31 31 H 1.08997 * 113.53552 * 254.44705 * 17 16 2 32 32 H 1.00901 * 110.99857 * 84.68111 * 18 17 16 33 33 H 1.08997 * 113.47731 * 141.77388 * 19 18 17 34 34 H 1.09001 * 113.47471 * 272.24480 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0054 1.4453 -2.1410 6 7 2.0180 3.3201 -1.5233 7 6 1.6699 3.9768 -2.7858 8 6 2.2098 5.3837 -2.7858 9 1 2.7572 5.7521 -1.9307 10 6 2.0051 6.2008 -3.8774 11 7 2.4759 7.4287 -3.8772 12 14 1.0590 5.5634 -5.3567 13 1 -0.3869 5.8526 -5.1816 14 1 1.5526 6.2340 -6.5863 15 1 1.2594 4.0970 -5.4780 16 6 1.9955 -0.7660 1.1376 17 6 1.4904 -2.2139 1.2081 18 7 2.8538 -2.6138 1.6035 19 6 3.3518 -1.4340 0.8718 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 1.5611 1.9273 0.8309 24 1 3.0798 1.3444 0.1083 25 1 2.5233 3.8013 -0.8496 26 1 2.1049 3.4211 -3.6164 27 1 0.5857 4.0034 -2.8946 28 1 2.3316 8.0037 -4.6450 29 1 1.9409 -0.2278 2.0840 30 1 1.1836 -2.6143 0.2418 31 1 0.7466 -2.3779 1.9877 32 1 2.9883 -2.5059 2.5977 33 1 4.1855 -0.9361 1.3668 34 1 3.5416 -1.6263 -0.1842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085258007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = -15.199574 kcal Electronic energy + Delta-G solvation = -15673.377177 eV Core-core repulsion = 13027.608524 eV Total energy + Delta-G solvation = -2645.768653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20494 -40.25371 -36.69488 -35.90412 -34.40472 -30.77960 -28.79431 -28.00770 -26.48326 -24.78033 -23.48619 -21.43416 -21.03348 -19.13729 -17.79864 -17.56363 -17.23037 -16.78440 -16.15214 -16.08336 -15.61356 -15.16481 -14.60555 -14.33803 -14.12781 -14.06228 -13.64616 -13.29753 -13.14306 -12.95119 -12.71369 -12.64245 -12.29516 -11.93760 -11.65903 -11.40480 -10.92083 -10.75620 -9.91121 -9.71234 -9.30144 -8.40509 -6.47396 1.32179 1.34862 1.47440 1.75886 2.26968 2.30426 2.95050 3.04558 3.20692 3.35307 3.90694 3.92959 4.24982 4.32505 4.44918 4.49181 4.58433 4.71228 4.73023 4.79849 4.84429 4.93232 5.03444 5.11325 5.16082 5.26661 5.55203 5.84951 6.06761 6.10934 6.41872 6.53926 6.88167 7.16160 7.45634 8.74217 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.060563 B = 0.004948 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.219479 B = 5657.100878 C = 5861.084048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.528 5.528 3 C 0.047 3.953 4 C 0.499 3.501 5 O -0.579 6.579 6 N -0.708 5.708 7 C 0.234 3.766 8 C -0.547 4.547 9 H 0.060 0.940 10 C 0.027 3.973 11 N -0.931 5.931 12 Si 0.937 3.063 13 H -0.265 1.265 14 H -0.273 1.273 15 H -0.262 1.262 16 C 0.007 3.993 17 C 0.029 3.971 18 N -0.658 5.658 19 C 0.027 3.973 20 H 0.034 0.966 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.123 0.877 25 H 0.408 0.592 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.272 0.728 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.348 0.652 33 H 0.085 0.915 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -15.662 13.236 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.084 4.084 4 C 0.286 3.714 5 O -0.460 6.460 6 N -0.359 5.359 7 C 0.110 3.890 8 C -0.585 4.585 9 H 0.078 0.922 10 C -0.173 4.173 11 N -0.570 5.570 12 Si 0.761 3.239 13 H -0.190 1.190 14 H -0.198 1.198 15 H -0.186 1.186 16 C -0.102 4.102 17 C -0.101 4.101 18 N -0.286 5.286 19 C -0.104 4.104 20 H 0.053 0.947 21 H 0.076 0.924 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.141 0.859 25 H 0.244 0.756 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.187 -16.882 11.674 20.560 hybrid contribution -0.655 1.852 0.544 2.039 sum -1.842 -15.030 12.218 19.457 Atomic orbital electron populations 1.22417 0.86600 1.02884 1.00523 1.61905 1.08945 1.12077 1.42391 1.21938 1.03331 0.89817 0.93338 1.21251 0.78962 0.81304 0.89897 1.90609 1.41814 1.65061 1.48467 1.46027 1.56461 1.13266 1.20116 1.19048 0.94804 0.91569 0.83588 1.21308 1.36672 0.96379 1.04102 0.92185 1.25591 0.95919 0.94695 1.01131 1.69977 1.46646 1.08120 1.32272 0.85862 0.79551 0.79343 0.79157 1.18975 1.19815 1.18625 1.24952 0.97648 0.94879 0.92725 1.23572 0.92906 0.91157 1.02511 1.65574 1.08209 1.41165 1.13630 1.23595 0.95935 0.89950 1.00899 0.94746 0.92449 0.90326 0.89774 0.85929 0.75625 0.97198 0.97214 0.91842 0.89274 0.89197 0.89544 0.83697 0.89649 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.98 127.69 1.15 1.72 16 2 N -0.53 -12.83 4.49 -900.56 -4.04 -16.87 16 3 C 0.05 1.14 5.44 85.56 0.47 1.61 16 4 C 0.50 18.13 7.52 87.66 0.66 18.79 16 5 O -0.58 -25.88 14.33 -3.03 -0.04 -25.92 16 6 N -0.71 -27.73 5.55 -466.80 -2.59 -30.32 16 7 C 0.23 11.46 4.50 85.63 0.38 11.84 16 8 C -0.55 -30.10 9.83 25.60 0.25 -29.85 16 9 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 10 C 0.03 1.52 5.47 84.66 0.46 1.99 16 11 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 12 Si 0.94 44.21 27.47 68.60 1.88 46.09 16 13 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.26 -12.34 6.54 99.48 0.65 -11.68 16 16 C 0.01 0.13 3.45 45.37 0.16 0.28 16 17 C 0.03 0.47 7.20 83.58 0.60 1.07 16 18 N -0.66 -10.81 8.76 -541.94 -4.75 -15.56 16 19 C 0.03 0.46 8.42 83.58 0.70 1.17 16 20 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 21 H 0.06 1.84 5.82 -2.39 -0.01 1.82 16 22 H 0.08 1.69 7.08 -2.39 -0.02 1.67 16 23 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 24 H 0.12 2.46 8.07 -2.39 -0.02 2.44 16 25 H 0.41 13.77 8.32 -92.71 -0.77 12.99 16 26 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 27 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.09 1.22 8.13 -2.38 -0.02 1.20 16 30 H 0.09 1.79 7.89 -2.38 -0.02 1.77 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.35 4.06 8.85 -89.69 -0.79 3.27 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.57 281.89 -4.92 -73.49 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -0.51 Total: 15.71 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.83 Total: 8.63 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -11.08 Total: -118.00 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.04 Total: -25.92 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -68.57 -4.92 -73.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085258007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.291 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds