Wall clock time and date at job start Mon Mar 30 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.47379 * 180.02562 * 11 10 9 13 13 C 1.42897 * 114.00263 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46833 * 29.99302 * 13 12 11 15 15 C 1.53008 * 109.46718 * 270.00211 * 13 12 11 16 16 C 1.52998 * 109.46744 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47477 * 59.99986 * 16 15 13 18 18 C 1.53000 * 109.46713 * 299.99899 * 17 16 15 19 19 H 1.08999 * 109.47258 * 299.99682 * 18 17 16 20 20 N 1.46897 * 109.47287 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47463 * 149.99989 * 13 12 11 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 26 26 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 27 27 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 28 28 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 29 29 H 1.09000 * 109.46727 * 299.99156 * 15 13 12 30 30 H 1.08995 * 109.47471 * 59.99838 * 15 13 12 31 31 H 1.09002 * 109.47262 * 179.97438 * 16 15 13 32 32 H 1.08999 * 109.47218 * 299.99860 * 16 15 13 33 33 H 1.08994 * 109.47352 * 59.99422 * 17 16 15 34 34 H 1.08998 * 109.47124 * 180.02562 * 17 16 15 35 35 H 1.00900 * 111.00129 * 59.99478 * 20 18 17 36 36 H 1.00900 * 111.00637 * 183.95301 * 20 18 17 37 37 H 1.09002 * 109.46687 * 300.00083 * 21 13 12 38 38 H 1.08999 * 109.46916 * 59.99882 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 8 2.4088 -6.0733 0.0062 13 6 1.7943 -7.3634 0.0102 14 1 0.8327 -7.3093 -0.5002 15 6 1.5800 -7.8217 1.4542 16 6 0.9215 -9.2027 1.4585 17 6 1.8269 -10.2018 0.7353 18 6 2.0411 -9.7435 -0.7087 19 1 1.0795 -9.6890 -1.2190 20 7 2.9098 -10.7030 -1.4033 21 6 2.7001 -8.3621 -0.7129 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 2.8678 -3.6059 -0.8902 26 1 2.8760 -3.6028 0.8897 27 1 0.8573 -5.0435 0.9006 28 1 0.8498 -5.0461 -0.8793 29 1 2.5416 -7.8758 1.9646 30 1 0.9347 -7.1102 1.9693 31 1 0.7692 -9.5295 2.4871 32 1 -0.0401 -9.1483 0.9481 33 1 2.7885 -10.2563 1.2455 34 1 1.3574 -11.1856 0.7379 35 1 2.4963 -11.6233 -1.4139 36 1 3.1190 -10.3897 -2.3393 37 1 2.8527 -8.0355 -1.7415 38 1 3.6617 -8.4161 -0.2024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086407123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:54 Heat of formation + Delta-G solvation = -86.601743 kcal Electronic energy + Delta-G solvation = -15694.964160 eV Core-core repulsion = 13149.639620 eV Total energy + Delta-G solvation = -2545.324540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30442 -36.88188 -33.96313 -33.26082 -31.59446 -29.84434 -28.09276 -26.51069 -23.04092 -22.55368 -21.61028 -20.33571 -19.69368 -16.62815 -16.17766 -15.77010 -15.43906 -15.19005 -15.09126 -14.42492 -14.09966 -13.57339 -13.34175 -12.69260 -12.48462 -12.20371 -11.75887 -11.65433 -11.63079 -11.12294 -10.93480 -10.82778 -10.65770 -10.57428 -10.44049 -10.23470 -9.78470 -9.41506 -9.09010 -9.06578 -8.95941 -8.34680 -5.99824 -4.01775 3.32420 3.39619 3.44722 3.80903 4.26274 4.47976 4.58593 4.80388 4.93415 5.07488 5.16069 5.26222 5.30946 5.36228 5.36566 5.46226 5.75570 5.78079 5.82060 5.89650 5.96254 6.05354 6.07777 6.22943 6.23939 6.30372 6.71898 6.77135 6.88787 7.11958 7.16669 7.63778 7.69858 7.80349 8.00139 8.43417 9.05222 9.62259 11.11805 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.063861 B = 0.003960 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.345231 B = 7069.455643 C = 7265.152584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.063 3.937 12 O -0.384 6.384 13 C 0.092 3.908 14 H 0.055 0.945 15 C -0.143 4.143 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.094 3.906 19 H 0.034 0.966 20 N -0.848 5.848 21 C -0.109 4.109 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.340 0.660 36 H 0.342 0.658 37 H 0.065 0.935 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -20.473 -0.331 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.304 6.304 13 C 0.033 3.967 14 H 0.073 0.927 15 C -0.181 4.181 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.017 4.017 19 H 0.052 0.948 20 N -0.378 5.378 21 C -0.147 4.147 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.004 -20.159 0.238 20.260 hybrid contribution -0.765 0.835 -0.674 1.318 sum 1.240 -19.324 -0.435 19.368 Atomic orbital electron populations 1.69979 1.06077 1.26506 1.51063 1.25036 0.94874 0.99332 0.95323 0.86507 0.80167 0.83634 0.77551 1.19663 1.21013 1.21003 1.21270 0.93190 0.90855 1.50325 0.92456 1.19055 0.93940 0.91137 0.97295 1.21649 0.99627 0.91780 1.01483 1.22814 0.92169 0.87049 0.99275 1.87928 1.34297 1.13150 1.94975 1.21925 0.95667 0.84261 0.94867 0.92720 1.22062 1.01779 0.96483 0.97742 1.21473 0.98572 0.94771 1.00594 1.21577 1.00576 0.98135 0.94778 1.21281 0.93638 0.92008 0.94795 0.94756 1.58675 1.50363 1.05346 1.23381 1.21575 0.99892 0.92194 1.01070 0.93061 0.96509 0.96509 0.92630 0.92595 0.93921 0.93981 0.91003 0.91514 0.91444 0.92065 0.90916 0.92275 0.84778 0.84510 0.91589 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.37 5.52 -26.73 -0.15 -2.52 16 11 C 0.06 1.17 5.75 37.15 0.21 1.39 16 12 O -0.38 -6.72 9.99 -35.23 -0.35 -7.07 16 13 C 0.09 1.25 2.61 -26.73 -0.07 1.18 16 14 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 15 C -0.14 -1.73 5.54 -26.73 -0.15 -1.87 16 16 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 17 C -0.11 -1.03 5.50 -26.73 -0.15 -1.17 16 18 C 0.09 0.90 3.25 -67.69 -0.22 0.68 16 19 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 20 N -0.85 -7.12 9.25 -4.65 -0.04 -7.16 16 21 C -0.11 -1.31 5.12 -26.71 -0.14 -1.44 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 28 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.84 7.87 -51.93 -0.41 0.44 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.34 2.24 9.04 -39.29 -0.36 1.88 16 36 H 0.34 2.55 8.99 -39.29 -0.35 2.20 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -30.79 305.52 -8.40 -39.19 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.96 Total: -1.62 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.36 Total: -18.38 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.69 Total: -33.65 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.35 Total: -7.07 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.79 -8.40 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086407123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.408 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds