Wall clock time and date at job start Mon Mar 30 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.47379 * 180.02562 * 11 10 9 13 13 C 1.42897 * 114.00263 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46833 * 29.99302 * 13 12 11 15 15 C 1.53008 * 109.46718 * 270.00211 * 13 12 11 16 16 C 1.52998 * 109.46744 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47477 * 59.99986 * 16 15 13 18 18 C 1.53000 * 109.46713 * 299.99899 * 17 16 15 19 19 H 1.08999 * 109.47258 * 299.99682 * 18 17 16 20 20 N 1.46897 * 109.47287 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47463 * 149.99989 * 13 12 11 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 26 26 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 27 27 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 28 28 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 29 29 H 1.09000 * 109.46727 * 299.99156 * 15 13 12 30 30 H 1.08995 * 109.47471 * 59.99838 * 15 13 12 31 31 H 1.09002 * 109.47262 * 179.97438 * 16 15 13 32 32 H 1.08999 * 109.47218 * 299.99860 * 16 15 13 33 33 H 1.08994 * 109.47352 * 59.99422 * 17 16 15 34 34 H 1.08998 * 109.47124 * 180.02562 * 17 16 15 35 35 H 1.00900 * 111.00129 * 59.99478 * 20 18 17 36 36 H 1.00900 * 111.00637 * 183.95301 * 20 18 17 37 37 H 1.09002 * 109.46687 * 300.00083 * 21 13 12 38 38 H 1.08999 * 109.46916 * 59.99882 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 8 2.4088 -6.0733 0.0062 13 6 1.7943 -7.3634 0.0102 14 1 0.8327 -7.3093 -0.5002 15 6 1.5800 -7.8217 1.4542 16 6 0.9215 -9.2027 1.4585 17 6 1.8269 -10.2018 0.7353 18 6 2.0411 -9.7435 -0.7087 19 1 1.0795 -9.6890 -1.2190 20 7 2.9098 -10.7030 -1.4033 21 6 2.7001 -8.3621 -0.7129 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 2.8678 -3.6059 -0.8902 26 1 2.8760 -3.6028 0.8897 27 1 0.8573 -5.0435 0.9006 28 1 0.8498 -5.0461 -0.8793 29 1 2.5416 -7.8758 1.9646 30 1 0.9347 -7.1102 1.9693 31 1 0.7692 -9.5295 2.4871 32 1 -0.0401 -9.1483 0.9481 33 1 2.7885 -10.2563 1.2455 34 1 1.3574 -11.1856 0.7379 35 1 2.4963 -11.6233 -1.4139 36 1 3.1190 -10.3897 -2.3393 37 1 2.8527 -8.0355 -1.7415 38 1 3.6617 -8.4161 -0.2024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086407123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:54 Heat of formation + Delta-G solvation = -106.823189 kcal Electronic energy + Delta-G solvation = -15695.841028 eV Core-core repulsion = 13149.639620 eV Total energy + Delta-G solvation = -2546.201408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33640 -38.07479 -35.86974 -34.24440 -33.44770 -30.96715 -28.93310 -28.41303 -24.93728 -23.45164 -22.58490 -22.09342 -20.68831 -18.58805 -17.58509 -16.79184 -16.63264 -16.48105 -16.17521 -15.96833 -15.18261 -14.86085 -14.51360 -14.27431 -13.92772 -13.54579 -13.32784 -13.04649 -12.73673 -12.60952 -12.49684 -12.26010 -11.98130 -11.80902 -11.68741 -11.52440 -11.41488 -11.34470 -11.13698 -10.57874 -10.38609 -9.62132 -8.22486 -6.33522 1.40244 1.40388 1.54440 2.39145 2.64256 3.10874 3.48980 3.72238 3.94423 4.02087 4.12610 4.17050 4.25032 4.31007 4.39331 4.46920 4.49994 4.57988 4.62043 4.87246 4.89444 5.01084 5.07289 5.11934 5.14278 5.20374 5.22248 5.28509 5.43687 5.48465 5.67896 5.80999 6.18631 6.23538 6.36657 6.61580 6.82169 7.35709 8.89820 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.063861 B = 0.003960 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.345231 B = 7069.455643 C = 7265.152584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.097 4.097 11 C 0.075 3.925 12 O -0.401 6.401 13 C 0.084 3.916 14 H 0.061 0.939 15 C -0.141 4.141 16 C -0.111 4.111 17 C -0.110 4.110 18 C 0.099 3.901 19 H 0.041 0.959 20 N -0.853 5.853 21 C -0.105 4.105 22 H 0.265 0.735 23 H -0.003 1.003 24 H -0.003 1.003 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.352 0.648 36 H 0.347 0.653 37 H 0.061 0.939 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -21.324 -0.376 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.135 4.135 11 C -0.001 4.001 12 O -0.321 6.321 13 C 0.026 3.974 14 H 0.079 0.921 15 C -0.179 4.179 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.012 4.012 19 H 0.059 0.941 20 N -0.385 5.385 21 C -0.143 4.143 22 H 0.074 0.926 23 H 0.015 0.985 24 H 0.016 0.984 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.080 0.920 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.348 -21.040 0.190 21.172 hybrid contribution -0.875 1.048 -0.668 1.519 sum 1.474 -19.992 -0.477 20.052 Atomic orbital electron populations 1.70095 1.07742 1.27847 1.51538 1.25990 0.95839 1.03393 0.94558 0.85355 0.78978 0.78531 0.77926 1.18753 1.20156 1.20160 1.21681 0.93564 0.92277 1.50807 0.92313 1.18929 0.94219 0.92509 0.95311 1.21400 0.98623 0.92262 1.01175 1.22494 0.91677 0.86166 0.99787 1.87882 1.34661 1.14336 1.95190 1.22213 0.96170 0.82741 0.96305 0.92099 1.22042 1.01512 0.98026 0.96354 1.21456 0.98634 0.93060 1.01705 1.21557 1.00192 0.98920 0.94073 1.21195 0.93721 0.90785 0.95529 0.94078 1.58629 1.50257 1.05800 1.23773 1.21541 0.99131 0.93329 1.00290 0.92631 0.98460 0.98445 0.92846 0.92869 0.93453 0.93444 0.91795 0.92365 0.90118 0.91285 0.91826 0.90298 0.83365 0.83934 0.91989 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.34 7.74 -2.92 -0.02 3.32 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.10 -4.32 5.52 30.59 0.17 -4.16 16 11 C 0.08 2.80 5.75 71.98 0.41 3.22 16 12 O -0.40 -13.93 9.99 -148.98 -1.49 -15.42 16 13 C 0.08 2.22 2.61 30.60 0.08 2.30 16 14 H 0.06 1.54 7.79 -2.39 -0.02 1.52 16 15 C -0.14 -3.30 5.54 30.60 0.17 -3.13 16 16 C -0.11 -1.87 5.92 30.60 0.18 -1.69 16 17 C -0.11 -1.74 5.50 30.60 0.17 -1.57 16 18 C 0.10 1.71 3.25 44.93 0.15 1.86 16 19 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 20 N -0.85 -12.62 9.25 -168.61 -1.56 -14.18 16 21 C -0.10 -2.41 5.12 30.61 0.16 -2.26 16 22 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.05 1.71 7.87 -2.39 -0.02 1.69 16 28 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.35 3.77 9.04 -89.69 -0.81 2.96 16 36 H 0.35 4.58 8.99 -89.69 -0.81 3.78 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.30 305.52 0.99 -64.31 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.60 Total: 10.28 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 2.33 Total: -35.07 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -1.27 Total: -71.01 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -1.49 Total: -15.42 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.30 0.99 -64.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086407123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.513 kcal (2) G-P(sol) polarization free energy of solvation -65.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds