Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48497 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46697 * 300.00009 * 3 2 1 6 6 H 1.48500 * 109.47304 * 59.99310 * 3 2 1 7 7 C 1.37877 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99673 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46922 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00044 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47352 * 185.30213 * 11 10 9 13 13 C 1.52998 * 109.47126 * 174.72948 * 12 11 10 14 14 O 1.42900 * 109.47377 * 60.98007 * 13 12 11 15 15 C 1.52998 * 109.46812 * 294.72772 * 12 11 10 16 16 C 1.53001 * 109.47181 * 179.97438 * 15 12 11 17 17 C 1.53001 * 109.46957 * 299.99983 * 16 15 12 18 18 C 1.52998 * 109.47162 * 60.00005 * 17 16 15 19 19 C 1.53001 * 109.47181 * 299.99857 * 18 17 16 20 20 H 0.96997 * 120.00304 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47188 * 59.99942 * 9 7 2 22 22 H 1.08997 * 109.47051 * 300.00077 * 9 7 2 23 23 H 1.00905 * 110.99889 * 303.94993 * 10 9 7 24 24 H 1.08996 * 109.47295 * 65.29954 * 11 10 9 25 25 H 1.09002 * 109.46902 * 305.29785 * 11 10 9 26 26 H 1.09004 * 109.46824 * 180.98081 * 13 12 11 27 27 H 1.08995 * 109.46762 * 300.97812 * 13 12 11 28 28 H 0.96692 * 114.00039 * 179.97438 * 14 13 12 29 29 H 1.08995 * 109.47237 * 300.00220 * 15 12 11 30 30 H 1.09001 * 109.47425 * 59.99895 * 15 12 11 31 31 H 1.09006 * 109.47293 * 179.97438 * 16 15 12 32 32 H 1.08994 * 109.47041 * 60.00114 * 16 15 12 33 33 H 1.09001 * 109.47033 * 299.99665 * 17 16 15 34 34 H 1.09004 * 109.47215 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.47144 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47425 * 59.99899 * 18 17 16 37 37 H 1.09001 * 109.46975 * 300.00317 * 19 18 17 38 38 H 1.08992 * 109.47033 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5247 -6.0401 0.1358 13 6 1.7889 -7.3751 0.2673 14 8 1.0033 -7.6034 -0.9043 15 6 3.4196 -6.0710 -1.1048 16 6 4.4393 -7.2036 -0.9700 17 6 5.2995 -6.9700 0.2736 18 6 4.4047 -6.9391 1.5142 19 6 3.3849 -5.8065 1.3794 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8411 -3.5489 -0.7792 24 1 0.9557 -5.0219 -0.9330 25 1 0.8092 -4.9432 0.8392 26 1 2.5148 -8.1803 0.3807 27 1 1.1383 -7.3467 1.1413 28 1 0.5085 -8.4341 -0.8903 29 1 2.8068 -6.2369 -1.9908 30 1 3.9437 -5.1199 -1.1986 31 1 5.0766 -7.2259 -1.8541 32 1 3.9156 -8.1548 -0.8761 33 1 5.8233 -6.0187 0.1796 34 1 6.0258 -7.7771 0.3699 35 1 5.0175 -6.7731 2.4002 36 1 3.8808 -7.8903 1.6082 37 1 3.9087 -4.8552 1.2854 38 1 2.7477 -5.7842 2.2634 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088175607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = -101.544452 kcal Electronic energy + Delta-G solvation = -16579.727178 eV Core-core repulsion = 14033.754673 eV Total energy + Delta-G solvation = -2545.972505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76534 -36.99657 -36.74652 -34.63896 -32.39652 -31.58746 -28.82505 -26.73703 -25.65164 -23.49410 -23.31900 -21.86979 -19.25270 -18.62406 -18.20327 -16.84921 -16.54944 -16.03947 -15.67881 -15.59142 -14.90706 -14.63733 -14.47802 -14.16428 -13.79559 -13.54483 -13.23716 -12.92806 -12.82572 -12.71648 -12.46683 -12.32323 -12.07457 -11.89501 -11.84705 -11.38262 -11.12905 -10.85970 -10.77666 -10.67331 -10.54814 -9.09137 -8.24059 -6.35912 1.39865 1.40908 1.55161 2.38993 3.08943 3.42972 3.56435 3.75363 3.91313 4.02675 4.27410 4.39393 4.43137 4.50168 4.55959 4.63994 4.73446 4.73859 4.83737 4.88050 4.98252 5.08409 5.13345 5.22716 5.25377 5.31194 5.42135 5.44573 5.46948 5.59958 5.62033 5.72360 6.00398 6.43269 6.70546 6.87167 7.00439 7.35337 8.88220 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.006128 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.858391 B = 4568.418260 C = 4971.893152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.677 5.677 11 C 0.076 3.924 12 C -0.045 4.045 13 C 0.087 3.913 14 O -0.588 6.588 15 C -0.104 4.104 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.097 4.097 20 H 0.265 0.735 21 H -0.047 1.047 22 H -0.003 1.003 23 H 0.331 0.669 24 H 0.007 0.993 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.392 0.608 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.324 -17.629 0.808 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.308 5.308 11 C -0.054 4.054 12 C -0.045 4.045 13 C 0.009 3.991 14 O -0.396 6.396 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.134 4.134 20 H 0.074 0.926 21 H -0.029 1.029 22 H 0.015 0.985 23 H 0.149 0.851 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.242 0.758 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.511 -16.938 1.331 19.002 hybrid contribution -0.940 0.649 -0.779 1.383 sum 7.571 -16.289 0.552 17.971 Atomic orbital electron populations 1.70114 1.07948 1.27992 1.51619 1.26018 0.95814 1.03588 0.94505 0.85228 0.78911 0.77990 0.77809 1.18519 1.20253 1.20220 1.21569 0.93816 0.91309 1.50504 0.91618 1.19193 0.90720 0.89317 0.92740 1.60606 1.20013 1.01322 1.48825 1.21859 0.95586 0.89812 0.98163 1.20531 0.94415 0.92651 0.96925 1.22324 0.93519 0.96336 0.86908 1.86496 1.65154 1.46177 1.41788 1.21458 0.97015 0.99150 0.96514 1.21505 0.96954 0.97987 0.98334 1.21541 0.97781 1.01884 0.94283 1.21610 0.97208 0.98338 0.98255 1.21372 0.97143 0.99519 0.95412 0.92588 1.02933 0.98475 0.85115 0.97439 0.93542 0.90657 0.93818 0.75844 0.93187 0.93199 0.91637 0.91121 0.92879 0.90413 0.91306 0.90841 0.92034 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.53 -31.68 9.32 25.60 0.24 -31.44 16 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 9 C 0.21 11.88 5.43 85.56 0.46 12.35 16 10 N -0.68 -31.10 5.45 -517.94 -2.82 -33.92 16 11 C 0.08 2.99 4.43 86.30 0.38 3.37 16 12 C -0.04 -1.32 0.42 -52.18 -0.02 -1.34 16 13 C 0.09 2.04 5.22 71.98 0.38 2.41 16 14 O -0.59 -14.39 12.41 -148.98 -1.85 -16.24 16 15 C -0.10 -2.92 4.35 30.59 0.13 -2.79 16 16 C -0.11 -2.32 5.65 30.59 0.17 -2.15 16 17 C -0.12 -2.29 5.92 30.59 0.18 -2.11 16 18 C -0.12 -2.37 5.65 30.59 0.17 -2.20 16 19 C -0.10 -2.70 4.52 30.59 0.14 -2.57 16 20 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.05 -2.92 8.14 -2.38 -0.02 -2.94 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.33 14.71 7.18 -89.69 -0.64 14.06 16 24 H 0.01 0.32 7.87 -2.39 -0.02 0.30 16 25 H 0.05 1.92 8.13 -2.39 -0.02 1.90 16 26 H 0.08 1.38 4.81 -2.38 -0.01 1.37 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.39 5.51 9.12 -74.06 -0.68 4.84 16 29 H 0.05 1.54 7.66 -2.39 -0.02 1.52 16 30 H 0.05 1.55 6.81 -2.39 -0.02 1.53 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.07 1.33 6.45 -2.39 -0.02 1.32 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.25 6.41 -2.39 -0.02 1.23 16 37 H 0.06 2.04 7.46 -2.39 -0.02 2.03 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -68.83 291.52 0.06 -68.77 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.28 Total: 18.24 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 2.70 Total: -26.07 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.54 Total: -92.12 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -1.85 Total: -16.24 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.83 0.06 -68.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088175607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.772 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds