Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00086 * 2 1 4 4 O 1.20821 * 120.00086 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00315 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.44771 * 30.89731 * 5 3 2 7 7 C 1.53040 * 109.46096 * 270.93012 * 5 3 2 8 8 C 1.53121 * 109.27557 * 180.80040 * 7 5 3 9 9 C 1.53126 * 109.15858 * 57.65413 * 8 7 5 10 10 C 1.53032 * 109.27734 * 302.34358 * 9 8 7 11 11 N 1.46843 * 109.46196 * 150.87344 * 5 3 2 12 12 C 1.46903 * 111.00279 * 305.85346 * 11 5 3 13 13 C 1.50696 * 109.47132 * 164.18418 * 12 11 5 14 14 H 1.08003 * 119.99691 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00015 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00009 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00084 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47157 * 90.00058 * 17 15 13 19 19 H 1.48492 * 109.47347 * 210.00568 * 17 15 13 20 20 H 1.48504 * 109.47064 * 330.00292 * 17 15 13 21 21 H 1.08994 * 109.47338 * 300.00172 * 1 2 3 22 22 H 1.09003 * 109.46729 * 60.00405 * 1 2 3 23 23 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.49840 * 300.74279 * 7 5 3 25 25 H 1.08998 * 109.50506 * 60.85895 * 7 5 3 26 26 H 1.09003 * 109.52010 * 177.55600 * 8 7 5 27 27 H 1.08996 * 109.52263 * 297.68714 * 8 7 5 28 28 H 1.08999 * 109.50195 * 62.28550 * 9 8 7 29 29 H 1.08996 * 109.49831 * 182.36154 * 9 8 7 30 30 H 1.09005 * 109.46292 * 179.19492 * 10 9 8 31 31 H 1.08999 * 109.46155 * 299.17038 * 10 9 8 32 32 H 1.08993 * 109.47083 * 284.18767 * 12 11 5 33 33 H 1.09006 * 109.46826 * 44.18720 * 12 11 5 34 34 H 0.97000 * 120.00140 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9752 0.4130 -0.5269 7 6 4.0762 1.2785 1.4436 8 6 5.6041 1.3789 1.4396 9 6 6.0224 2.6468 0.6898 10 6 5.4561 2.6035 -0.7313 11 7 3.9919 2.5081 -0.6734 12 6 3.4046 2.6036 -2.0166 13 6 3.5318 4.0179 -2.5210 14 1 4.0022 4.7705 -1.9055 15 6 3.0485 4.3509 -3.7687 16 7 2.4762 3.4344 -4.5183 17 14 3.2068 6.1039 -4.3943 18 1 4.4908 6.2548 -5.1249 19 1 2.0777 6.4066 -5.3100 20 1 3.1778 7.0441 -3.2451 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.6567 2.1324 1.9755 25 1 3.7734 0.3559 1.9388 26 1 5.9687 1.4255 2.4657 27 1 6.0253 0.5050 0.9426 28 1 5.6336 3.5222 1.2100 29 1 7.1101 2.7021 0.6472 30 1 5.7402 3.5115 -1.2633 31 1 5.8561 1.7354 -1.2552 32 1 3.9302 1.9284 -2.6917 33 1 2.3512 2.3267 -1.9731 34 1 2.1359 3.6687 -5.3959 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105979943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = -86.708941 kcal Electronic energy + Delta-G solvation = -16587.517693 eV Core-core repulsion = 13906.355410 eV Total energy + Delta-G solvation = -2681.162283 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20554 -38.03287 -35.79773 -33.60349 -31.87338 -30.96147 -27.58917 -26.94436 -24.11041 -23.44328 -21.38832 -20.45288 -19.13961 -17.14853 -16.45756 -16.14909 -15.79300 -14.95909 -14.27135 -14.10888 -13.85340 -13.41361 -13.39325 -12.58739 -12.44276 -12.23127 -11.88094 -11.79867 -11.32973 -10.97957 -10.80419 -10.71544 -10.55677 -10.40999 -10.24447 -10.07671 -9.85124 -9.43562 -9.17431 -8.37123 -7.32324 -5.97306 -3.97331 2.78973 3.09117 3.35392 3.41310 3.46947 4.45077 4.78389 5.05587 5.10981 5.26770 5.37084 5.38141 5.45095 5.49937 5.57018 5.64413 5.80211 5.92888 5.98869 6.13851 6.20344 6.22326 6.37658 6.67647 6.69164 6.81822 7.22672 7.26706 7.80756 8.07914 8.14598 8.35085 8.55940 9.08298 9.65387 11.14045 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.010025 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.795159 B = 2792.276894 C = 3761.807624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.462 3.538 4 O -0.471 6.471 5 C 0.098 3.902 6 H 0.059 0.941 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.121 4.121 10 C 0.067 3.933 11 N -0.517 5.517 12 C 0.186 3.814 13 C -0.497 4.497 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.023 0.977 32 H -0.009 1.009 33 H 0.036 0.964 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 -7.211 10.454 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.303 3.697 4 O -0.354 6.354 5 C -0.012 4.012 6 H 0.077 0.923 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.159 4.159 10 C -0.061 4.061 11 N -0.245 5.245 12 C 0.062 3.938 13 C -0.536 4.536 14 H 0.082 0.918 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.113 0.887 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.009 0.991 33 H 0.054 0.946 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.255 -6.522 10.548 12.605 hybrid contribution -0.038 0.240 -1.065 1.093 sum 2.217 -6.282 9.483 11.589 Atomic orbital electron populations 1.23160 0.77114 1.02931 1.02522 1.86481 1.22908 1.34387 1.84937 1.23635 0.91914 0.81204 0.72992 1.90699 1.66470 1.35929 1.42333 1.21160 0.86913 0.95353 0.97811 0.92294 1.21542 0.96528 1.02386 0.93856 1.21538 0.94754 0.98619 1.00315 1.21678 0.99445 0.98037 0.96705 1.21991 0.87156 1.01567 0.95341 1.61979 1.08089 1.30601 1.23782 1.19893 0.95003 0.97732 0.81194 1.21060 1.37778 0.94544 1.00195 0.91773 1.24983 0.95419 0.97518 0.96819 1.69961 1.40008 1.33254 1.10851 0.86477 0.77438 0.84746 0.78648 1.20779 1.21317 1.19735 0.92335 0.91808 0.88667 0.90538 0.91449 0.91821 0.92188 0.91133 0.91995 0.89255 0.95868 0.99121 0.94619 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.54 10.56 -39.24 -0.41 -6.95 16 3 C 0.46 9.52 5.82 36.01 0.21 9.73 16 4 O -0.47 -11.38 15.13 -18.75 -0.28 -11.66 16 5 C 0.10 1.86 2.34 -68.87 -0.16 1.70 16 6 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.11 -1.57 5.36 -26.65 -0.14 -1.71 16 8 C -0.11 -1.49 6.00 -26.60 -0.16 -1.65 16 9 C -0.12 -1.78 6.09 -26.65 -0.16 -1.94 16 10 C 0.07 1.28 5.30 -3.83 -0.02 1.26 16 11 N -0.52 -11.58 4.20 -229.51 -0.96 -12.55 16 12 C 0.19 5.08 4.37 -4.98 -0.02 5.06 16 13 C -0.50 -14.53 8.50 -34.44 -0.29 -14.82 16 14 H 0.06 1.85 7.51 -52.48 -0.39 1.46 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 17 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 21 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 22 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 23 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.84 7.13 -51.93 -0.37 1.47 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H -0.01 -0.26 8.06 -51.93 -0.42 -0.68 16 33 H 0.04 1.07 5.69 -51.93 -0.30 0.77 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 280.09 15.07 4.22 4.22 Total: -1.00 -33.29 280.09 -6.77 -40.06 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -5.26 Total: -4.24 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.22 Total: 0.69 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.23 Total: -39.46 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.70 Total: -18.61 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.29 -6.77 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105979943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.649 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds