Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00086 * 2 1 4 4 O 1.20821 * 120.00086 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00315 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.44771 * 30.89731 * 5 3 2 7 7 C 1.53040 * 109.46096 * 270.93012 * 5 3 2 8 8 C 1.53121 * 109.27557 * 180.80040 * 7 5 3 9 9 C 1.53126 * 109.15858 * 57.65413 * 8 7 5 10 10 C 1.53032 * 109.27734 * 302.34358 * 9 8 7 11 11 N 1.46843 * 109.46196 * 150.87344 * 5 3 2 12 12 C 1.46903 * 111.00279 * 305.85346 * 11 5 3 13 13 C 1.50696 * 109.47132 * 164.18418 * 12 11 5 14 14 H 1.08003 * 119.99691 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00015 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00009 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00084 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47157 * 90.00058 * 17 15 13 19 19 H 1.48492 * 109.47347 * 210.00568 * 17 15 13 20 20 H 1.48504 * 109.47064 * 330.00292 * 17 15 13 21 21 H 1.08994 * 109.47338 * 300.00172 * 1 2 3 22 22 H 1.09003 * 109.46729 * 60.00405 * 1 2 3 23 23 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.49840 * 300.74279 * 7 5 3 25 25 H 1.08998 * 109.50506 * 60.85895 * 7 5 3 26 26 H 1.09003 * 109.52010 * 177.55600 * 8 7 5 27 27 H 1.08996 * 109.52263 * 297.68714 * 8 7 5 28 28 H 1.08999 * 109.50195 * 62.28550 * 9 8 7 29 29 H 1.08996 * 109.49831 * 182.36154 * 9 8 7 30 30 H 1.09005 * 109.46292 * 179.19492 * 10 9 8 31 31 H 1.08999 * 109.46155 * 299.17038 * 10 9 8 32 32 H 1.08993 * 109.47083 * 284.18767 * 12 11 5 33 33 H 1.09006 * 109.46826 * 44.18720 * 12 11 5 34 34 H 0.97000 * 120.00140 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9752 0.4130 -0.5269 7 6 4.0762 1.2785 1.4436 8 6 5.6041 1.3789 1.4396 9 6 6.0224 2.6468 0.6898 10 6 5.4561 2.6035 -0.7313 11 7 3.9919 2.5081 -0.6734 12 6 3.4046 2.6036 -2.0166 13 6 3.5318 4.0179 -2.5210 14 1 4.0022 4.7705 -1.9055 15 6 3.0485 4.3509 -3.7687 16 7 2.4762 3.4344 -4.5183 17 14 3.2068 6.1039 -4.3943 18 1 4.4908 6.2548 -5.1249 19 1 2.0777 6.4066 -5.3100 20 1 3.1778 7.0441 -3.2451 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.6567 2.1324 1.9755 25 1 3.7734 0.3559 1.9388 26 1 5.9687 1.4255 2.4657 27 1 6.0253 0.5050 0.9426 28 1 5.6336 3.5222 1.2100 29 1 7.1101 2.7021 0.6472 30 1 5.7402 3.5115 -1.2633 31 1 5.8561 1.7354 -1.2552 32 1 3.9302 1.9284 -2.6917 33 1 2.3512 2.3267 -1.9731 34 1 2.1359 3.6687 -5.3959 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105979943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = -109.688617 kcal Electronic energy + Delta-G solvation = -16588.514166 eV Core-core repulsion = 13906.355410 eV Total energy + Delta-G solvation = -2682.158757 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.77546 -39.51800 -37.37208 -35.49562 -33.73143 -32.38808 -29.14453 -28.65571 -25.80940 -24.91271 -23.21088 -21.88073 -20.55825 -18.71060 -18.55468 -17.75963 -17.35723 -16.72544 -15.98829 -15.67805 -15.14986 -14.95152 -14.79040 -14.18368 -14.00775 -13.95427 -13.46071 -13.25970 -13.00648 -12.69868 -12.62439 -12.32883 -12.10169 -11.88762 -11.81255 -11.64323 -11.48886 -11.10742 -11.00610 -10.61523 -9.11296 -8.22950 -6.32343 1.18368 1.36687 1.39816 1.51343 1.68548 2.37713 3.08746 3.15171 3.76271 3.83634 4.04768 4.12136 4.26512 4.29105 4.29876 4.34320 4.59393 4.64510 4.80133 4.86048 4.94254 5.03756 5.14240 5.17172 5.23726 5.30110 5.35574 5.51988 5.61698 6.00804 6.27561 6.45864 6.80867 6.83512 7.35960 8.88582 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.010025 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.795159 B = 2792.276894 C = 3761.807624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.461 3.539 4 O -0.518 6.518 5 C 0.091 3.909 6 H 0.068 0.932 7 C -0.098 4.098 8 C -0.108 4.108 9 C -0.113 4.113 10 C 0.063 3.937 11 N -0.531 5.531 12 C 0.204 3.796 13 C -0.516 4.516 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.267 1.267 21 H 0.067 0.933 22 H 0.042 0.958 23 H 0.141 0.859 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.026 0.974 32 H -0.037 1.037 33 H 0.001 0.999 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -7.556 11.908 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.405 6.405 5 C -0.019 4.019 6 H 0.085 0.915 7 C -0.136 4.136 8 C -0.146 4.146 9 C -0.150 4.150 10 C -0.064 4.064 11 N -0.258 5.258 12 C 0.078 3.922 13 C -0.555 4.555 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.578 5.578 17 Si 0.796 3.204 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.192 1.192 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.159 0.841 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.044 0.956 32 H -0.019 1.019 33 H 0.019 0.981 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.488 -6.900 12.026 14.297 hybrid contribution -0.472 0.251 -1.510 1.602 sum 3.016 -6.648 10.516 12.802 Atomic orbital electron populations 1.23515 0.75092 1.05784 1.01984 1.86466 1.24894 1.32742 1.84170 1.24068 0.92695 0.81275 0.71644 1.90668 1.67531 1.37530 1.44762 1.21441 0.86184 0.93969 1.00325 0.91478 1.21604 0.98087 1.03459 0.90471 1.21566 0.92898 0.97880 1.02212 1.21648 1.00955 0.99006 0.93418 1.22090 0.85270 1.00460 0.98571 1.61859 1.10042 1.33137 1.20753 1.19463 0.92963 0.96233 0.83522 1.21376 1.37951 0.95448 1.00701 0.92058 1.25962 0.94761 1.02304 0.96967 1.70093 1.40746 1.35625 1.11303 0.85339 0.78053 0.78868 0.78108 1.19117 1.20768 1.19171 0.91428 0.93888 0.84070 0.91671 0.88442 0.88294 0.90809 0.91926 0.88961 0.91700 0.95594 1.01910 0.98067 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.37 -12.80 10.56 -51.35 -0.54 -13.34 16 3 C 0.46 19.29 5.82 71.24 0.41 19.71 16 4 O -0.52 -26.00 15.13 21.98 0.33 -25.67 16 5 C 0.09 3.43 2.34 44.20 0.10 3.54 16 6 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 7 C -0.10 -2.70 5.36 30.65 0.16 -2.54 16 8 C -0.11 -2.38 6.00 30.68 0.18 -2.20 16 9 C -0.11 -3.04 6.09 30.65 0.19 -2.85 16 10 C 0.06 2.41 5.30 86.32 0.46 2.86 16 11 N -0.53 -24.29 4.20 -880.03 -3.70 -27.99 16 12 C 0.20 11.67 4.37 85.56 0.37 12.04 16 13 C -0.52 -31.20 8.50 25.60 0.22 -30.98 16 14 H 0.06 3.64 7.51 -2.91 -0.02 3.62 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 16 N -0.94 -59.15 13.29 21.45 0.28 -58.87 16 17 Si 0.97 46.49 29.54 68.60 2.03 48.52 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 22 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 23 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 2.73 7.13 -2.38 -0.02 2.72 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H -0.04 -2.23 8.06 -2.39 -0.02 -2.25 16 33 H 0.00 0.08 5.69 -2.38 -0.01 0.07 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -75.46 280.09 3.23 -72.23 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.06 Total: 3.22 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 3.76 Total: 1.90 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -3.41 Total: -86.86 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.21 Total: -39.01 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -75.46 3.23 -72.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105979943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.462 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds