Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34636 * 117.00123 * 2 1 4 4 O 1.21521 * 119.99679 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00142 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63242 * 0.02562 * 5 3 2 7 7 C 1.53195 * 108.77845 * 233.58225 * 6 5 3 8 8 C 1.53039 * 109.31257 * 305.36660 * 7 6 5 9 9 C 1.53046 * 109.52798 * 61.36716 * 8 7 6 10 10 H 1.08998 * 109.49692 * 58.57850 * 9 8 7 11 11 C 1.53001 * 109.49566 * 178.67884 * 9 8 7 12 12 C 1.50699 * 109.46829 * 185.00284 * 11 9 8 13 13 H 1.07999 * 120.00113 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99865 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00189 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00028 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47426 * 90.00053 * 16 14 12 18 18 H 1.48499 * 109.47107 * 210.00161 * 16 14 12 19 19 H 1.48504 * 109.47197 * 329.99913 * 16 14 12 20 20 C 1.46931 * 120.63145 * 179.97438 * 5 3 2 21 21 H 1.08997 * 109.47434 * 300.00484 * 1 2 3 22 22 H 1.09002 * 109.47065 * 60.00431 * 1 2 3 23 23 H 1.09002 * 109.46894 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.59005 * 113.79701 * 6 5 3 25 25 H 1.09000 * 109.58835 * 353.37037 * 6 5 3 26 26 H 1.08997 * 109.50026 * 185.40903 * 7 6 5 27 27 H 1.09000 * 109.49142 * 65.31548 * 7 6 5 28 28 H 1.09002 * 109.46050 * 181.38302 * 8 7 6 29 29 H 1.09004 * 109.46034 * 301.35518 * 8 7 6 30 30 H 1.09003 * 109.47118 * 304.99914 * 11 9 8 31 31 H 1.09001 * 109.47354 * 65.00138 * 11 9 8 32 32 H 0.96995 * 120.00544 * 179.97438 * 15 14 12 33 33 H 1.08998 * 109.58959 * 246.20295 * 20 5 3 34 34 H 1.09003 * 109.58592 * 6.62863 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.2228 0.0469 0.0005 7 6 5.2125 0.1129 1.1681 8 6 6.0234 1.4072 1.0717 9 6 5.0813 2.6095 1.1683 10 1 4.5350 2.5688 2.1106 11 6 5.8961 3.9030 1.1049 12 6 4.9837 5.0825 1.3230 13 1 3.9283 4.9252 1.4897 14 6 5.4963 6.3623 1.3087 15 7 4.7001 7.3917 1.4985 16 14 7.3216 6.6343 1.0197 17 1 7.5756 6.7830 -0.4359 18 1 7.7565 7.8658 1.7264 19 1 8.0838 5.4703 1.5388 20 6 4.0906 2.5719 0.0000 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.7706 -0.0277 -0.9389 25 1 3.5759 -0.8224 0.1186 26 1 5.8862 -0.7427 1.1229 27 1 4.6649 0.0960 2.1104 28 1 6.7453 1.4451 1.8874 29 1 6.5510 1.4350 0.1182 30 1 6.6623 3.8881 1.8800 31 1 6.3701 3.9863 0.1269 32 1 5.0606 8.2921 1.4888 33 1 4.6275 2.7029 -0.9395 34 1 3.3562 3.3688 0.1177 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107432490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = -93.357996 kcal Electronic energy + Delta-G solvation = -16280.563986 eV Core-core repulsion = 13599.113378 eV Total energy + Delta-G solvation = -2681.450608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34027 -38.10730 -35.95660 -33.96846 -32.34867 -31.29497 -27.98041 -27.26707 -24.87254 -23.43960 -21.41913 -20.36622 -19.20208 -17.71778 -16.82111 -16.60707 -16.25712 -14.63146 -14.47921 -14.25712 -14.00646 -13.80580 -13.14269 -12.86896 -12.60068 -12.45804 -12.06041 -11.88592 -11.56408 -11.10708 -10.92467 -10.68789 -10.60743 -10.29924 -10.20319 -10.03683 -9.81583 -9.43773 -9.05924 -8.51590 -8.36190 -6.00084 -3.98768 2.42423 3.11444 3.32100 3.39808 3.42226 4.13305 4.47248 5.01942 5.11918 5.19155 5.24500 5.27603 5.32062 5.49703 5.55901 5.63153 5.78425 5.89753 6.08124 6.15136 6.22837 6.32471 6.44938 6.53192 6.77168 6.80214 6.96382 7.23896 7.37202 7.66195 7.80789 8.56458 8.58064 9.06340 9.61373 11.13180 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.007420 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.917015 B = 3772.521549 C = 4451.257129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.378 6.378 3 C 0.643 3.357 4 O -0.567 6.567 5 N -0.591 5.591 6 C 0.113 3.887 7 C -0.134 4.134 8 C -0.120 4.120 9 C -0.085 4.085 10 H 0.068 0.932 11 C -0.006 4.006 12 C -0.522 4.522 13 H 0.075 0.925 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.266 1.266 20 C 0.137 3.863 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.066 0.934 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -17.245 -3.138 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.292 6.292 3 C 0.396 3.604 4 O -0.455 6.455 5 N -0.332 5.332 6 C -0.010 4.010 7 C -0.172 4.172 8 C -0.158 4.158 9 C -0.105 4.105 10 H 0.087 0.913 11 C -0.044 4.044 12 C -0.560 4.560 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.191 1.191 20 C 0.018 3.982 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.478 -16.753 -3.133 17.108 hybrid contribution 0.817 0.346 -0.124 0.896 sum -0.661 -16.408 -3.258 16.741 Atomic orbital electron populations 1.23113 0.75114 1.02865 1.02714 1.86195 1.23670 1.31759 1.87569 1.18110 0.83480 0.81895 0.76868 1.91028 1.64110 1.34698 1.55705 1.47192 1.01504 1.09248 1.75225 1.21680 0.93808 0.86691 0.98846 1.21936 0.98026 0.98684 0.98575 1.21694 0.98080 0.94097 1.01881 1.21426 0.95726 0.95343 0.97957 0.91346 1.19587 0.95823 0.92455 0.96547 1.21176 0.96263 0.89387 1.49128 0.90675 1.25034 0.97553 0.96141 0.94682 1.69924 1.35170 0.98612 1.50278 0.86807 0.86358 0.77725 0.78533 1.20338 1.21482 1.19060 1.21902 0.95916 0.81845 0.98581 0.91977 0.92058 0.88425 0.91521 0.89692 0.91189 0.91654 0.91869 0.92138 0.96076 0.96824 0.92783 0.91552 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.56 101.05 1.07 1.70 16 2 O -0.38 -5.55 9.20 -40.31 -0.37 -5.92 16 3 C 0.64 11.72 8.43 54.05 0.46 12.17 16 4 O -0.57 -12.47 15.55 -19.29 -0.30 -12.77 16 5 N -0.59 -10.05 2.97 -178.54 -0.53 -10.58 16 6 C 0.11 1.45 6.45 -3.71 -0.02 1.42 16 7 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 8 C -0.12 -1.80 5.17 -26.69 -0.14 -1.94 16 9 C -0.09 -1.65 2.29 -90.48 -0.21 -1.86 16 10 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 11 C -0.01 -0.15 3.52 -27.88 -0.10 -0.24 16 12 C -0.52 -14.77 9.04 -34.44 -0.31 -15.08 16 13 H 0.08 2.34 7.32 -52.49 -0.38 1.95 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 16 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 20 C 0.14 2.67 5.43 -3.69 -0.02 2.65 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.98 6.93 -51.93 -0.36 0.62 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.11 2.51 6.01 -51.93 -0.31 2.20 16 LS Contribution 277.08 15.07 4.18 4.18 Total: -1.00 -33.05 277.08 -5.67 -38.72 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.22 Total: -2.10 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 0.47 Total: -1.14 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.24 Total: -37.92 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.67 Total: -18.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.05 -5.67 -38.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107432490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.635 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds