Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34636 * 116.99855 * 2 1 4 4 O 1.21509 * 120.00384 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.46919 * 120.63395 * 179.97438 * 5 3 2 7 7 C 1.53195 * 108.89273 * 126.29715 * 6 5 3 8 8 C 1.53346 * 109.14901 * 54.57640 * 7 6 5 9 9 C 1.53004 * 109.41904 * 178.67276 * 8 7 6 10 10 C 1.50701 * 109.47085 * 295.13082 * 9 8 7 11 11 H 1.07998 * 120.00293 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99472 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00682 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99519 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47133 * 60.00060 * 14 12 10 16 16 H 1.48503 * 109.46942 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47295 * 299.99976 * 14 12 10 18 18 C 1.53034 * 109.61010 * 298.71225 * 8 7 6 19 19 C 1.46933 * 120.62602 * 359.97266 * 5 3 2 20 20 H 1.08999 * 109.46771 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47122 * 299.99367 * 1 2 3 22 22 H 1.08996 * 109.47710 * 60.00013 * 1 2 3 23 23 H 1.09002 * 109.58751 * 246.15665 * 6 5 3 24 24 H 1.08996 * 109.58750 * 6.43850 * 6 5 3 25 25 H 1.08997 * 109.49914 * 174.65962 * 7 6 5 26 26 H 1.09002 * 109.49585 * 294.75599 * 7 6 5 27 27 H 1.09001 * 109.42242 * 58.75065 * 8 7 6 28 28 H 1.09001 * 109.46592 * 55.13132 * 9 8 7 29 29 H 1.08997 * 109.47133 * 175.12697 * 9 8 7 30 30 H 0.97001 * 120.00836 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.50232 * 301.42239 * 18 8 7 32 32 H 1.09007 * 109.52628 * 181.33900 * 18 8 7 33 33 H 1.08994 * 109.58580 * 353.42544 * 19 5 3 34 34 H 1.09006 * 109.57831 * 113.70037 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0905 2.5719 -0.0011 7 6 5.0811 2.6138 1.1667 8 6 6.0233 1.4077 1.0705 9 6 7.0368 1.4613 2.2155 10 6 7.9171 2.6734 2.0509 11 1 7.7689 3.3387 1.2132 12 6 8.9116 2.9329 2.9698 13 7 9.0925 2.1226 3.9897 14 14 10.0033 4.4349 2.7654 15 1 9.1665 5.6615 2.7863 16 1 10.9868 4.4869 3.8768 17 1 10.7248 4.3499 1.4701 18 6 5.2125 0.1135 1.1675 19 6 4.2229 0.0469 -0.0005 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 4.6274 2.7029 -0.9406 24 1 3.3559 3.3689 0.1141 25 1 5.6597 3.5363 1.1201 26 1 4.5346 2.5737 2.1090 27 1 6.5509 1.4351 0.1171 28 1 6.5075 1.5231 3.1665 29 1 7.6511 0.5611 2.1994 30 1 9.7925 2.3049 4.6360 31 1 4.6649 0.0969 2.1098 32 1 5.8859 -0.7426 1.1229 33 1 3.5759 -0.8223 0.1176 34 1 4.7686 -0.0289 -0.9411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107432493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -97.929139 kcal Electronic energy + Delta-G solvation = -16068.630678 eV Core-core repulsion = 13386.981851 eV Total energy + Delta-G solvation = -2681.648827 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.46706 -38.08226 -36.14265 -34.06737 -32.12496 -30.76544 -28.48514 -27.19775 -24.58315 -22.94184 -22.05234 -20.45457 -19.22923 -17.81711 -16.92146 -16.41450 -16.22414 -14.65307 -14.50978 -14.17507 -14.01792 -13.65320 -13.24940 -12.85593 -12.72757 -12.20774 -12.04007 -11.86707 -11.18519 -11.04450 -10.78607 -10.75534 -10.67913 -10.46924 -10.38529 -10.09243 -9.64020 -9.28488 -8.98540 -8.44593 -8.34440 -5.99583 -4.01649 2.29403 2.93742 3.33217 3.38123 3.40087 4.03064 4.45873 5.07130 5.15183 5.18716 5.32327 5.35642 5.41168 5.42969 5.56873 5.67175 5.82682 5.96356 6.08010 6.23762 6.33271 6.38413 6.55752 6.63925 6.97048 7.00257 7.10708 7.50927 7.66301 7.81062 7.99802 8.39272 8.42318 9.04585 9.62270 11.11658 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.056623 B = 0.005585 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.377259 B = 5011.924125 C = 5269.420798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.646 3.354 4 O -0.582 6.582 5 N -0.586 5.586 6 C 0.123 3.877 7 C -0.119 4.119 8 C -0.082 4.082 9 C 0.028 3.972 10 C -0.517 4.517 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.131 4.131 19 C 0.112 3.888 20 H 0.099 0.901 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.015 0.985 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 -4.958 -8.029 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.400 3.600 4 O -0.472 6.472 5 N -0.326 5.326 6 C 0.003 3.997 7 C -0.157 4.157 8 C -0.101 4.101 9 C -0.009 4.009 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.169 4.169 19 C -0.010 4.010 20 H 0.117 0.883 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.534 -4.706 -7.872 15.531 hybrid contribution 0.577 0.809 0.040 0.994 sum -11.957 -3.898 -7.832 14.815 Atomic orbital electron populations 1.23128 0.75030 1.03097 1.02524 1.86236 1.23693 1.31409 1.87309 1.18071 0.83413 0.81916 0.76556 1.90955 1.64389 1.34910 1.56933 1.47066 1.01508 1.09303 1.74757 1.21861 0.95373 0.82595 0.99904 1.21993 0.96237 1.00931 0.96540 1.21268 0.95713 0.91542 1.01556 1.19121 0.92553 0.97005 0.92242 1.21205 1.15461 1.09403 1.09498 0.92610 1.25011 0.97494 0.96540 0.95348 1.69945 1.32923 1.37273 1.13394 0.86705 0.80461 0.83514 0.77590 1.20254 1.21379 1.20293 1.22049 0.97487 1.00019 0.97313 1.21827 0.93799 0.85738 0.99684 0.88255 0.92022 0.92119 0.91345 0.89376 0.89367 0.92219 0.92200 0.96626 0.96561 0.92993 0.91967 0.90880 0.89807 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 10.56 101.05 1.07 1.63 16 2 O -0.37 -5.14 9.20 -40.31 -0.37 -5.51 16 3 C 0.65 10.59 8.43 54.06 0.46 11.04 16 4 O -0.58 -10.92 15.54 -19.28 -0.30 -11.22 16 5 N -0.59 -9.19 2.97 -178.53 -0.53 -9.72 16 6 C 0.12 1.95 6.42 -3.71 -0.02 1.92 16 7 C -0.12 -2.16 5.21 -26.45 -0.14 -2.29 16 8 C -0.08 -1.58 2.10 -90.42 -0.19 -1.77 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 10 C -0.52 -14.02 8.39 -34.44 -0.29 -14.31 16 11 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.57 13.28 55.43 0.74 -25.84 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.13 -2.10 5.36 -26.59 -0.14 -2.25 16 19 C 0.11 1.55 6.45 -3.69 -0.02 1.53 16 20 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 25 H 0.09 1.68 6.93 -51.93 -0.36 1.32 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 33 H 0.08 1.05 6.93 -51.93 -0.36 0.69 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 280.48 15.07 4.23 4.23 Total: -1.00 -31.42 280.48 -6.00 -37.42 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.24 Total: -3.25 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.49 Total: -2.43 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.21 Total: -35.56 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.67 Total: -16.72 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.42 -6.00 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107432493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.505 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds