Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34636 * 116.99855 * 2 1 4 4 O 1.21509 * 120.00384 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.46919 * 120.63395 * 179.97438 * 5 3 2 7 7 C 1.53195 * 108.89273 * 126.29715 * 6 5 3 8 8 C 1.53346 * 109.14901 * 54.57640 * 7 6 5 9 9 C 1.53004 * 109.41904 * 178.67276 * 8 7 6 10 10 C 1.50701 * 109.47085 * 295.13082 * 9 8 7 11 11 H 1.07998 * 120.00293 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99472 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00682 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99519 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47133 * 60.00060 * 14 12 10 16 16 H 1.48503 * 109.46942 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47295 * 299.99976 * 14 12 10 18 18 C 1.53034 * 109.61010 * 298.71225 * 8 7 6 19 19 C 1.46933 * 120.62602 * 359.97266 * 5 3 2 20 20 H 1.08999 * 109.46771 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47122 * 299.99367 * 1 2 3 22 22 H 1.08996 * 109.47710 * 60.00013 * 1 2 3 23 23 H 1.09002 * 109.58751 * 246.15665 * 6 5 3 24 24 H 1.08996 * 109.58750 * 6.43850 * 6 5 3 25 25 H 1.08997 * 109.49914 * 174.65962 * 7 6 5 26 26 H 1.09002 * 109.49585 * 294.75599 * 7 6 5 27 27 H 1.09001 * 109.42242 * 58.75065 * 8 7 6 28 28 H 1.09001 * 109.46592 * 55.13132 * 9 8 7 29 29 H 1.08997 * 109.47133 * 175.12697 * 9 8 7 30 30 H 0.97001 * 120.00836 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.50232 * 301.42239 * 18 8 7 32 32 H 1.09007 * 109.52628 * 181.33900 * 18 8 7 33 33 H 1.08994 * 109.58580 * 353.42544 * 19 5 3 34 34 H 1.09006 * 109.57831 * 113.70037 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0905 2.5719 -0.0011 7 6 5.0811 2.6138 1.1667 8 6 6.0233 1.4077 1.0705 9 6 7.0368 1.4613 2.2155 10 6 7.9171 2.6734 2.0509 11 1 7.7689 3.3387 1.2132 12 6 8.9116 2.9329 2.9698 13 7 9.0925 2.1226 3.9897 14 14 10.0033 4.4349 2.7654 15 1 9.1665 5.6615 2.7863 16 1 10.9868 4.4869 3.8768 17 1 10.7248 4.3499 1.4701 18 6 5.2125 0.1135 1.1675 19 6 4.2229 0.0469 -0.0005 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 4.6274 2.7029 -0.9406 24 1 3.3559 3.3689 0.1141 25 1 5.6597 3.5363 1.1201 26 1 4.5346 2.5737 2.1090 27 1 6.5509 1.4351 0.1171 28 1 6.5075 1.5231 3.1665 29 1 7.6511 0.5611 2.1994 30 1 9.7925 2.3049 4.6360 31 1 4.6649 0.0969 2.1098 32 1 5.8859 -0.7426 1.1229 33 1 3.5759 -0.8223 0.1176 34 1 4.7686 -0.0289 -0.9411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107432493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -117.570951 kcal Electronic energy + Delta-G solvation = -16069.482411 eV Core-core repulsion = 13386.981851 eV Total energy + Delta-G solvation = -2682.500560 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.67265 -39.38977 -37.37148 -35.76500 -34.00152 -32.06040 -30.08038 -28.31576 -26.26783 -24.27217 -23.64363 -21.85729 -20.62284 -19.08864 -18.35589 -18.07611 -17.53001 -16.53550 -15.78054 -15.38208 -15.22543 -15.01683 -14.77548 -14.36311 -14.01032 -13.84881 -13.41104 -13.03517 -12.90617 -12.73877 -12.46842 -12.32991 -12.13661 -11.85901 -11.78039 -11.61406 -11.30835 -11.03930 -10.82672 -10.49535 -9.74599 -8.14670 -6.23818 1.18247 1.42895 1.44889 1.52266 1.69908 2.44353 2.95206 3.19190 3.94244 4.01692 4.07508 4.18889 4.37820 4.38619 4.41251 4.55253 4.64946 4.71484 4.83989 4.88996 4.96744 5.05879 5.27037 5.28430 5.34628 5.39238 5.54525 5.59222 5.82691 5.92069 6.29032 6.32376 6.92949 7.18255 7.44860 8.96992 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.056623 B = 0.005585 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.377259 B = 5011.924125 C = 5269.420798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.644 3.356 4 O -0.611 6.611 5 N -0.590 5.590 6 C 0.132 3.868 7 C -0.112 4.112 8 C -0.075 4.075 9 C 0.032 3.968 10 C -0.529 4.529 11 H 0.065 0.935 12 C -0.002 4.002 13 N -0.937 5.937 14 Si 0.958 3.042 15 H -0.268 1.268 16 H -0.288 1.288 17 H -0.266 1.266 18 C -0.125 4.125 19 C 0.119 3.881 20 H 0.138 0.862 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.068 0.932 28 H -0.017 1.017 29 H -0.008 1.008 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.893 -5.095 -9.743 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.399 3.601 4 O -0.504 6.504 5 N -0.330 5.330 6 C 0.011 3.989 7 C -0.150 4.150 8 C -0.093 4.093 9 C -0.005 4.005 10 C -0.567 4.567 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.578 5.578 14 Si 0.783 3.217 15 H -0.194 1.194 16 H -0.214 1.214 17 H -0.191 1.191 18 C -0.163 4.163 19 C -0.002 4.002 20 H 0.156 0.844 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.002 0.998 29 H 0.010 0.990 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.062 -4.863 -9.603 16.926 hybrid contribution 0.686 0.793 0.612 1.214 sum -12.376 -4.071 -8.992 15.830 Atomic orbital electron populations 1.23493 0.72937 1.05619 1.02425 1.86242 1.25684 1.29783 1.86816 1.18213 0.83508 0.82280 0.76106 1.90933 1.65074 1.36118 1.58259 1.47145 1.01680 1.09675 1.74463 1.21717 0.94677 0.82962 0.99504 1.21851 0.96306 0.99855 0.96976 1.21122 0.95067 0.93835 0.99306 1.19021 0.93123 0.95279 0.93059 1.21666 1.15481 1.10044 1.09508 0.91638 1.25926 0.99225 0.99647 0.95075 1.70090 1.33836 1.39374 1.14455 0.85607 0.78486 0.79789 0.77808 1.19350 1.21405 1.19071 1.21956 0.97749 0.98539 0.98032 1.21884 0.93366 0.85657 0.99327 0.84424 0.92524 0.91898 0.89106 0.89810 0.90549 0.94103 0.91340 0.99842 0.98970 0.93057 0.93354 0.89892 0.87906 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 10.56 113.37 1.20 2.06 16 2 O -0.37 -9.35 9.20 -55.46 -0.51 -9.86 16 3 C 0.64 19.97 8.43 129.79 1.09 21.07 16 4 O -0.61 -22.31 15.54 19.81 0.31 -22.00 16 5 N -0.59 -17.27 2.97 -949.17 -2.82 -20.09 16 6 C 0.13 3.97 6.42 86.36 0.55 4.52 16 7 C -0.11 -4.02 5.21 30.78 0.16 -3.86 16 8 C -0.07 -2.83 2.10 -10.66 -0.02 -2.86 16 9 C 0.03 1.64 4.45 29.85 0.13 1.77 16 10 C -0.53 -28.89 8.39 25.60 0.21 -28.68 16 11 H 0.07 3.37 7.06 -2.91 -0.02 3.35 16 12 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 13 N -0.94 -56.77 13.28 21.45 0.28 -56.48 16 14 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 C -0.12 -3.87 5.36 30.68 0.16 -3.70 16 19 C 0.12 2.96 6.45 86.37 0.56 3.52 16 20 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.08 2.62 7.00 -2.39 -0.02 2.60 16 25 H 0.08 2.90 6.93 -2.39 -0.02 2.89 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.10 2.23 6.93 -2.39 -0.02 2.21 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -68.14 280.48 4.87 -63.27 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.07 Total: 5.18 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 4.52 Total: -5.78 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.54 Total: -76.57 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.20 Total: -31.86 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.14 4.87 -63.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107432493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.298 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds