Wall clock time and date at job start Mon Mar 30 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46671 * 269.99682 * 3 2 1 5 5 H 1.48494 * 109.47389 * 29.99844 * 3 2 1 6 6 H 1.48500 * 109.46755 * 150.00055 * 3 2 1 7 7 C 1.37875 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00430 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46851 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.46908 * 180.02562 * 11 10 9 13 13 C 1.46382 * 119.32375 * 270.23883 * 12 11 10 14 14 C 1.53241 * 109.25163 * 151.16757 * 13 12 11 15 15 C 1.53249 * 108.56083 * 55.28369 * 14 13 12 16 16 N 1.46378 * 109.15134 * 304.51360 * 15 14 13 17 17 N 1.36600 * 119.32974 * 209.08498 * 16 15 14 18 18 C 1.34133 * 119.33152 * 90.00248 * 12 11 10 19 19 O 1.21593 * 118.69649 * 0.54753 * 18 12 11 20 20 H 0.96996 * 119.99967 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46684 * 60.00357 * 9 7 2 22 22 H 1.08999 * 109.47446 * 300.00419 * 9 7 2 23 23 H 1.09005 * 109.46960 * 60.00784 * 10 9 7 24 24 H 1.08999 * 109.47634 * 300.00562 * 10 9 7 25 25 H 1.08998 * 109.47116 * 60.00777 * 11 10 9 26 26 H 1.09001 * 109.47451 * 300.00053 * 11 10 9 27 27 H 1.08998 * 109.63360 * 31.13905 * 13 12 11 28 28 H 1.08997 * 109.31029 * 271.00127 * 13 12 11 29 29 H 1.08991 * 109.62655 * 295.55559 * 14 13 12 30 30 H 1.09000 * 109.61865 * 175.00119 * 14 13 12 31 31 H 1.09005 * 109.52122 * 184.61604 * 15 14 13 32 32 H 1.08998 * 109.52707 * 64.41958 * 15 14 13 33 33 H 1.00893 * 111.00263 * 179.97438 * 17 16 15 34 34 H 1.00901 * 110.99526 * 303.93593 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4323 -6.1006 0.0024 13 6 2.9022 -6.6426 -1.2737 14 6 4.3108 -7.2175 -1.0905 15 6 4.2737 -8.2466 0.0445 16 7 3.7336 -7.6140 1.2489 17 7 4.1282 -8.0655 2.4763 18 6 2.8593 -6.5996 1.1719 19 8 2.4332 -6.1166 2.2032 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6247 -2.5563 0.8919 23 1 2.8726 -3.6040 0.8910 24 1 2.8714 -3.6047 -0.8890 25 1 0.8533 -5.0450 -0.8878 26 1 0.8539 -5.0447 0.8922 27 1 2.9267 -5.8499 -2.0214 28 1 2.2260 -7.4324 -1.6007 29 1 5.0032 -6.4155 -0.8350 30 1 4.6314 -7.7015 -2.0130 31 1 5.2834 -8.6060 0.2434 32 1 3.6381 -9.0840 -0.2435 33 1 3.6814 -7.5429 3.2146 34 1 3.9486 -9.0537 2.5728 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127708836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:11 Heat of formation + Delta-G solvation = -7.508480 kcal Electronic energy + Delta-G solvation = -16006.222676 eV Core-core repulsion = 13360.787534 eV Total energy + Delta-G solvation = -2645.435142 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76534 -36.67977 -36.41496 -33.93254 -32.35613 -30.76325 -29.12760 -27.12648 -25.16035 -23.42630 -22.50538 -20.17977 -18.99409 -17.84733 -17.28437 -16.25540 -15.87194 -15.47034 -14.74529 -14.34521 -14.13428 -13.84001 -13.74772 -13.68856 -12.36061 -12.24657 -11.87493 -11.57985 -11.51979 -11.17646 -10.86154 -10.73173 -10.67995 -10.54136 -9.96562 -9.62710 -9.43449 -9.10847 -8.45793 -8.29548 -7.84689 -5.94801 -3.96599 2.45622 3.26274 3.35513 3.41574 3.46084 3.57399 4.49965 4.51043 4.60598 4.87862 5.03253 5.15356 5.32030 5.39379 5.40978 5.59202 5.64157 5.87659 6.06167 6.20003 6.27796 6.52561 6.73503 7.00771 7.14211 7.21603 7.56040 7.72496 7.86648 7.95473 8.05275 8.48672 8.78201 9.09940 9.66950 11.16634 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.043468 B = 0.005430 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.997904 B = 5155.119675 C = 5267.771272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.128 3.872 12 N -0.616 5.616 13 C 0.109 3.891 14 C -0.151 4.151 15 C 0.131 3.869 16 N -0.481 5.481 17 N -0.592 5.592 18 C 0.694 3.306 19 O -0.595 6.595 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.018 0.982 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.371 0.629 34 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -18.599 -3.338 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.160 4.160 11 C 0.007 3.993 12 N -0.353 5.353 13 C -0.014 4.014 14 C -0.190 4.190 15 C 0.008 3.992 16 N -0.309 5.309 17 N -0.220 5.220 18 C 0.395 3.605 19 O -0.474 6.474 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.190 0.810 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.565 -17.981 -3.017 19.739 hybrid contribution -0.472 0.608 0.142 0.782 sum 7.093 -17.373 -2.875 18.984 Atomic orbital electron populations 1.69967 1.06026 1.26525 1.51077 1.25018 0.94847 0.99204 0.95400 0.86595 0.79907 0.83512 0.78010 1.20708 1.21212 1.19903 1.21235 0.92998 0.91047 1.50285 0.92804 1.19038 0.93929 0.91151 0.97257 1.21965 0.99649 0.93799 1.00563 1.21716 0.90420 0.84552 1.02661 1.47035 1.47678 1.36964 1.03585 1.21580 0.94180 0.98993 0.86662 1.22206 0.97970 0.99791 0.98997 1.21484 0.99957 0.94995 0.82744 1.45669 1.46022 1.36388 1.02798 1.60533 1.59393 1.07670 0.94381 1.15633 0.79162 0.80975 0.84744 1.90919 1.61275 1.62467 1.32715 0.93052 0.96601 0.96347 0.92943 0.93587 0.90896 0.89977 0.89383 0.91994 0.89932 0.88277 0.89385 0.92204 0.80988 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.67 5.48 -26.73 -0.15 -2.82 16 11 C 0.13 2.37 5.32 -4.04 -0.02 2.35 16 12 N -0.62 -9.81 2.82 -179.77 -0.51 -10.31 16 13 C 0.11 1.21 6.49 -3.98 -0.03 1.18 16 14 C -0.15 -1.32 6.20 -26.48 -0.16 -1.48 16 15 C 0.13 1.20 6.76 -3.98 -0.03 1.17 16 16 N -0.48 -6.50 3.72 -65.52 -0.24 -6.75 16 17 N -0.59 -7.19 10.26 60.35 0.62 -6.57 16 18 C 0.69 12.12 8.04 -88.07 -0.71 11.42 16 19 O -0.60 -12.82 14.92 5.28 0.08 -12.74 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 26 H 0.08 1.68 7.29 -51.93 -0.38 1.30 16 27 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.37 5.12 7.46 -181.37 -1.35 3.76 16 34 H 0.33 2.92 9.17 -181.36 -1.66 1.26 16 LS Contribution 283.06 15.07 4.27 4.27 Total: -1.00 -35.09 283.06 -9.29 -44.38 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.58 Total: -1.03 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.64 Total: -1.66 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.61 Total: -50.47 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.09 -9.29 -44.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127708836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.874 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds