Wall clock time and date at job start Mon Mar 30 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46671 * 269.99682 * 3 2 1 5 5 H 1.48494 * 109.47389 * 29.99844 * 3 2 1 6 6 H 1.48500 * 109.46755 * 150.00055 * 3 2 1 7 7 C 1.37875 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00430 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46851 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.46908 * 180.02562 * 11 10 9 13 13 C 1.46382 * 119.32375 * 270.23883 * 12 11 10 14 14 C 1.53241 * 109.25163 * 151.16757 * 13 12 11 15 15 C 1.53249 * 108.56083 * 55.28369 * 14 13 12 16 16 N 1.46378 * 109.15134 * 304.51360 * 15 14 13 17 17 N 1.36600 * 119.32974 * 209.08498 * 16 15 14 18 18 C 1.34133 * 119.33152 * 90.00248 * 12 11 10 19 19 O 1.21593 * 118.69649 * 0.54753 * 18 12 11 20 20 H 0.96996 * 119.99967 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46684 * 60.00357 * 9 7 2 22 22 H 1.08999 * 109.47446 * 300.00419 * 9 7 2 23 23 H 1.09005 * 109.46960 * 60.00784 * 10 9 7 24 24 H 1.08999 * 109.47634 * 300.00562 * 10 9 7 25 25 H 1.08998 * 109.47116 * 60.00777 * 11 10 9 26 26 H 1.09001 * 109.47451 * 300.00053 * 11 10 9 27 27 H 1.08998 * 109.63360 * 31.13905 * 13 12 11 28 28 H 1.08997 * 109.31029 * 271.00127 * 13 12 11 29 29 H 1.08991 * 109.62655 * 295.55559 * 14 13 12 30 30 H 1.09000 * 109.61865 * 175.00119 * 14 13 12 31 31 H 1.09005 * 109.52122 * 184.61604 * 15 14 13 32 32 H 1.08998 * 109.52707 * 64.41958 * 15 14 13 33 33 H 1.00893 * 111.00263 * 179.97438 * 17 16 15 34 34 H 1.00901 * 110.99526 * 303.93593 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4323 -6.1006 0.0024 13 6 2.9022 -6.6426 -1.2737 14 6 4.3108 -7.2175 -1.0905 15 6 4.2737 -8.2466 0.0445 16 7 3.7336 -7.6140 1.2489 17 7 4.1282 -8.0655 2.4763 18 6 2.8593 -6.5996 1.1719 19 8 2.4332 -6.1166 2.2032 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6247 -2.5563 0.8919 23 1 2.8726 -3.6040 0.8910 24 1 2.8714 -3.6047 -0.8890 25 1 0.8533 -5.0450 -0.8878 26 1 0.8539 -5.0447 0.8922 27 1 2.9267 -5.8499 -2.0214 28 1 2.2260 -7.4324 -1.6007 29 1 5.0032 -6.4155 -0.8350 30 1 4.6314 -7.7015 -2.0130 31 1 5.2834 -8.6060 0.2434 32 1 3.6381 -9.0840 -0.2435 33 1 3.6814 -7.5429 3.2146 34 1 3.9486 -9.0537 2.5728 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127708836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:11 Heat of formation + Delta-G solvation = -32.602178 kcal Electronic energy + Delta-G solvation = -16007.310820 eV Core-core repulsion = 13360.787534 eV Total energy + Delta-G solvation = -2646.523287 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.93039 -37.91612 -37.59000 -35.81548 -34.00633 -32.30016 -30.14550 -28.79740 -26.52678 -24.84895 -23.83585 -22.06328 -19.99965 -18.99458 -18.60924 -18.19787 -17.00190 -16.70202 -16.48785 -15.89092 -15.41517 -15.20479 -14.78466 -14.66958 -14.32815 -13.83934 -13.31740 -12.97267 -12.75901 -12.61340 -12.47959 -12.43967 -12.28020 -11.69803 -11.58413 -11.52823 -11.30266 -11.16189 -10.56630 -9.79586 -8.89346 -8.21209 -6.32835 1.36791 1.38563 1.40529 1.51692 1.98937 2.39778 2.52873 3.11254 3.70304 3.82860 4.00645 4.10218 4.31757 4.35821 4.50836 4.59163 4.62757 4.64562 4.83831 4.90152 4.98057 5.15902 5.19056 5.32012 5.45246 5.60175 5.70420 5.82081 6.15487 6.23553 6.46296 6.80349 6.82411 7.36039 7.56701 8.90466 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.043468 B = 0.005430 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.997904 B = 5155.119675 C = 5267.771272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.101 4.101 11 C 0.140 3.860 12 N -0.617 5.617 13 C 0.098 3.902 14 C -0.143 4.143 15 C 0.123 3.877 16 N -0.477 5.477 17 N -0.594 5.594 18 C 0.679 3.321 19 O -0.651 6.651 20 H 0.265 0.735 21 H 0.007 0.993 22 H -0.015 1.015 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.361 0.639 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.808 -19.709 -5.079 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.140 4.140 11 C 0.017 3.983 12 N -0.353 5.353 13 C -0.023 4.023 14 C -0.182 4.182 15 C 0.002 3.998 16 N -0.303 5.303 17 N -0.222 5.222 18 C 0.379 3.621 19 O -0.533 6.533 20 H 0.074 0.926 21 H 0.025 0.975 22 H 0.003 0.997 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.162 0.838 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.178 0.822 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.171 -19.166 -4.811 21.786 hybrid contribution -0.940 0.875 0.681 1.454 sum 8.231 -18.291 -4.130 20.478 Atomic orbital electron populations 1.70092 1.07720 1.27862 1.51480 1.25976 0.95825 1.03320 0.94559 0.85432 0.78436 0.78319 0.78767 1.19078 1.20545 1.19339 1.21642 0.93301 0.92537 1.50908 0.92789 1.18918 0.94249 0.92656 0.95086 1.21681 0.98413 0.94220 0.99681 1.21341 0.90450 0.83969 1.02556 1.47013 1.47130 1.35995 1.05121 1.21997 0.96167 0.99942 0.84218 1.22248 0.95851 0.99260 1.00816 1.21908 1.01425 0.95521 0.80966 1.45929 1.44488 1.35437 1.04410 1.60529 1.58848 1.08863 0.93911 1.15997 0.79702 0.81973 0.84381 1.90873 1.63319 1.64471 1.34679 0.92641 0.97498 0.99697 0.95808 0.92147 0.88289 0.92767 0.88913 0.89253 0.92038 0.83780 0.87450 0.89406 0.82183 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.55 -32.77 9.11 25.60 0.23 -32.54 16 8 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.10 -4.58 5.48 30.59 0.17 -4.41 16 11 C 0.14 5.27 5.32 86.38 0.46 5.73 16 12 N -0.62 -19.20 2.82 -841.29 -2.37 -21.57 16 13 C 0.10 1.88 6.49 86.48 0.56 2.44 16 14 C -0.14 -1.98 6.20 30.76 0.19 -1.79 16 15 C 0.12 1.79 6.76 86.49 0.58 2.38 16 16 N -0.48 -12.19 3.72 -479.84 -1.78 -13.97 16 17 N -0.59 -13.84 10.26 37.02 0.38 -13.46 16 18 C 0.68 23.76 8.04 179.46 1.44 25.20 16 19 O -0.65 -29.26 14.92 -4.01 -0.06 -29.32 16 20 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 21 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 22 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 23 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.10 3.17 8.06 -2.39 -0.02 3.15 16 26 H 0.05 2.33 7.29 -2.39 -0.02 2.32 16 27 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.36 10.12 7.46 -210.57 -1.57 8.55 16 34 H 0.35 5.60 9.17 -210.55 -1.93 3.67 16 Total: -1.00 -79.15 283.06 0.32 -78.82 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -2.41 Total: 10.34 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 4.25 Total: -0.73 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.49 Total: -106.90 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.06 Total: -29.32 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.15 0.32 -78.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127708836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.223 kcal (2) G-P(sol) polarization free energy of solvation -79.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds