Wall clock time and date at job start Mon Mar 30 2020 03:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.62733 * 35.38793 * 12 11 10 14 14 C 1.54246 * 109.63071 * 275.00159 * 12 11 10 15 15 C 1.45542 * 112.40657 * 160.29980 * 14 12 11 16 16 C 1.54234 * 112.40574 * 61.93899 * 15 14 12 17 17 C 1.50469 * 108.52707 * 280.01542 * 16 15 14 18 18 C 1.54068 * 112.49832 * 94.14876 * 17 16 15 19 19 C 1.50477 * 109.62887 * 155.97715 * 12 11 10 20 20 H 1.09000 * 108.87757 * 93.08557 * 19 12 11 21 21 O 1.42901 * 108.87630 * 334.63738 * 19 12 11 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.00908 * 110.99637 * 56.05081 * 11 10 9 28 28 H 1.09000 * 108.89820 * 281.06057 * 14 12 11 29 29 H 1.09009 * 108.89073 * 39.64380 * 14 12 11 30 30 H 1.09004 * 108.89482 * 182.69301 * 15 14 12 31 31 H 1.09001 * 108.89734 * 301.28096 * 15 14 12 32 32 H 1.09000 * 109.62674 * 39.72346 * 16 15 14 33 33 H 1.08997 * 109.62845 * 160.29875 * 16 15 14 34 34 H 1.08999 * 108.88022 * 214.93113 * 17 16 15 35 35 H 1.09004 * 108.87428 * 333.47201 * 17 16 15 36 36 H 1.08999 * 108.81423 * 79.14914 * 18 17 16 37 37 H 1.09004 * 108.81076 * 197.53845 * 18 17 16 38 38 H 0.96696 * 113.99720 * 180.02562 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.3165 -5.8305 0.6156 14 6 2.8600 -6.4059 -1.4233 15 6 4.0859 -7.1885 -1.4766 16 6 3.9390 -8.5589 -0.7842 17 6 4.0740 -8.3609 0.7013 18 6 2.7117 -8.1833 1.3986 19 6 1.7477 -7.2804 0.6054 20 1 1.3067 -7.8612 -0.2047 21 8 0.7041 -6.8403 1.4767 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.8721 -3.6081 -0.8798 26 1 2.8721 -3.6002 0.9002 27 1 0.8743 -4.9879 -0.7641 28 1 2.0608 -6.9683 -1.9062 29 1 3.0138 -5.4740 -1.9675 30 1 4.3580 -7.3476 -2.5200 31 1 4.8828 -6.6301 -0.9856 32 1 2.9593 -8.9800 -1.0099 33 1 4.7202 -9.2326 -1.1363 34 1 4.5784 -9.2277 1.1283 35 1 4.6809 -7.4743 0.8852 36 1 2.2514 -9.1632 1.5255 37 1 2.8750 -7.7422 2.3819 38 1 0.2109 -7.5596 1.8944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130716608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:44 Heat of formation + Delta-G solvation = -70.954283 kcal Electronic energy + Delta-G solvation = -16346.456128 eV Core-core repulsion = 13801.810113 eV Total energy + Delta-G solvation = -2544.646015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51684 -35.79390 -35.31065 -32.96307 -31.69449 -30.32893 -27.92459 -24.86172 -23.97848 -22.89169 -20.78898 -20.40074 -19.32729 -16.99367 -16.24807 -15.44354 -15.22509 -14.79626 -14.44624 -14.33054 -13.78662 -13.37958 -13.09745 -12.76337 -12.52831 -12.10056 -11.80251 -11.55979 -11.24710 -11.02564 -10.88689 -10.85712 -10.62701 -10.55221 -10.43343 -10.22612 -9.89483 -9.50424 -9.25014 -9.04398 -8.28907 -7.53715 -5.93298 -3.95498 3.34931 3.41977 3.46220 4.37268 4.44894 4.52729 4.62554 4.90417 4.98778 5.05544 5.16969 5.28707 5.29441 5.42467 5.44209 5.62231 5.71443 5.82757 5.96154 6.00379 6.07152 6.09731 6.19264 6.21959 6.30778 6.37291 6.50119 6.54889 7.09435 7.61505 7.82807 7.92283 8.01032 8.16195 8.21352 8.52332 9.12434 9.67802 11.18253 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.005376 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.372319 B = 5206.616103 C = 5539.454784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.664 5.664 12 C 0.097 3.903 13 H 0.078 0.922 14 C -0.151 4.151 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.150 4.150 19 C 0.118 3.882 20 H 0.042 0.958 21 O -0.532 6.532 22 H 0.259 0.741 23 H 0.026 0.974 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.055 0.945 27 H 0.334 0.666 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -18.529 -0.877 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.293 5.293 12 C -0.015 4.015 13 H 0.097 0.903 14 C -0.191 4.191 15 C -0.153 4.153 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.189 4.189 19 C 0.058 3.942 20 H 0.059 0.941 21 O -0.334 6.334 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.291 -17.793 -0.370 18.876 hybrid contribution 0.636 0.353 -0.793 1.076 sum 6.926 -17.439 -1.162 18.800 Atomic orbital electron populations 1.69990 1.06014 1.26361 1.50915 1.25001 0.94820 0.99151 0.95425 0.86551 0.80067 0.83912 0.77537 1.19819 1.21082 1.20995 1.21235 0.92968 0.91104 1.50487 0.92807 1.19060 0.94050 0.90375 0.97712 1.22176 0.96918 0.88829 0.98165 1.60497 1.18404 1.00959 1.49423 1.21327 0.95328 0.91128 0.93688 0.90332 1.21260 0.98370 1.00766 0.98667 1.20454 0.98452 0.95820 1.00573 1.21376 1.01858 0.97129 0.95307 1.21284 0.96904 1.01801 0.95460 1.22692 0.96251 0.99591 1.00339 1.21650 0.87703 0.93842 0.91027 0.94059 1.86948 1.48024 1.34993 1.63440 0.93113 0.95554 0.96935 0.97036 0.92661 0.84837 0.92132 0.91410 0.92446 0.92035 0.91740 0.92032 0.92351 0.91764 0.92368 0.91156 0.79780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 10 C 0.07 1.50 5.39 -3.83 -0.02 1.48 16 11 N -0.66 -12.79 5.29 -107.37 -0.57 -13.36 16 12 C 0.10 1.47 2.04 -68.32 -0.14 1.33 16 13 H 0.08 1.27 6.66 -51.93 -0.35 0.92 16 14 C -0.15 -1.96 4.62 -29.60 -0.14 -2.10 16 15 C -0.11 -1.24 5.26 -29.60 -0.16 -1.40 16 16 C -0.12 -1.11 5.61 -27.35 -0.15 -1.26 16 17 C -0.12 -1.13 5.32 -27.44 -0.15 -1.28 16 18 C -0.15 -1.59 5.44 -25.62 -0.14 -1.73 16 19 C 0.12 1.54 2.86 -27.43 -0.08 1.46 16 20 H 0.04 0.50 6.63 -51.93 -0.34 0.16 16 21 O -0.53 -8.03 12.31 -35.23 -0.43 -8.46 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.01 0.25 7.34 -51.93 -0.38 -0.13 16 26 H 0.05 1.26 8.06 -51.93 -0.42 0.84 16 27 H 0.33 6.33 8.49 -39.29 -0.33 5.99 16 28 H 0.06 0.74 7.47 -51.93 -0.39 0.35 16 29 H 0.07 0.98 7.23 -51.92 -0.38 0.61 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.69 7.46 -51.93 -0.39 0.30 16 32 H 0.06 0.60 6.98 -51.93 -0.36 0.23 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.68 6.63 -51.93 -0.34 0.33 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.36 3.69 9.04 45.56 0.41 4.10 16 LS Contribution 293.13 15.07 4.42 4.42 Total: -1.00 -32.24 293.13 -8.16 -40.41 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.77 Total: 3.69 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.53 Total: -16.90 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.17 Total: -40.31 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.43 Total: -8.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.24 -8.16 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130716608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.546 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds