Wall clock time and date at job start Mon Mar 30 2020 03:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.62733 * 35.38793 * 12 11 10 14 14 C 1.54246 * 109.63071 * 275.00159 * 12 11 10 15 15 C 1.45542 * 112.40657 * 160.29980 * 14 12 11 16 16 C 1.54234 * 112.40574 * 61.93899 * 15 14 12 17 17 C 1.50469 * 108.52707 * 280.01542 * 16 15 14 18 18 C 1.54068 * 112.49832 * 94.14876 * 17 16 15 19 19 C 1.50477 * 109.62887 * 155.97715 * 12 11 10 20 20 H 1.09000 * 108.87757 * 93.08557 * 19 12 11 21 21 O 1.42901 * 108.87630 * 334.63738 * 19 12 11 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.00908 * 110.99637 * 56.05081 * 11 10 9 28 28 H 1.09000 * 108.89820 * 281.06057 * 14 12 11 29 29 H 1.09009 * 108.89073 * 39.64380 * 14 12 11 30 30 H 1.09004 * 108.89482 * 182.69301 * 15 14 12 31 31 H 1.09001 * 108.89734 * 301.28096 * 15 14 12 32 32 H 1.09000 * 109.62674 * 39.72346 * 16 15 14 33 33 H 1.08997 * 109.62845 * 160.29875 * 16 15 14 34 34 H 1.08999 * 108.88022 * 214.93113 * 17 16 15 35 35 H 1.09004 * 108.87428 * 333.47201 * 17 16 15 36 36 H 1.08999 * 108.81423 * 79.14914 * 18 17 16 37 37 H 1.09004 * 108.81076 * 197.53845 * 18 17 16 38 38 H 0.96696 * 113.99720 * 180.02562 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.3165 -5.8305 0.6156 14 6 2.8600 -6.4059 -1.4233 15 6 4.0859 -7.1885 -1.4766 16 6 3.9390 -8.5589 -0.7842 17 6 4.0740 -8.3609 0.7013 18 6 2.7117 -8.1833 1.3986 19 6 1.7477 -7.2804 0.6054 20 1 1.3067 -7.8612 -0.2047 21 8 0.7041 -6.8403 1.4767 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.8721 -3.6081 -0.8798 26 1 2.8721 -3.6002 0.9002 27 1 0.8743 -4.9879 -0.7641 28 1 2.0608 -6.9683 -1.9062 29 1 3.0138 -5.4740 -1.9675 30 1 4.3580 -7.3476 -2.5200 31 1 4.8828 -6.6301 -0.9856 32 1 2.9593 -8.9800 -1.0099 33 1 4.7202 -9.2326 -1.1363 34 1 4.5784 -9.2277 1.1283 35 1 4.6809 -7.4743 0.8852 36 1 2.2514 -9.1632 1.5255 37 1 2.8750 -7.7422 2.3819 38 1 0.2109 -7.5596 1.8944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130716608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:44 Heat of formation + Delta-G solvation = -94.425233 kcal Electronic energy + Delta-G solvation = -16347.473905 eV Core-core repulsion = 13801.810113 eV Total energy + Delta-G solvation = -2545.663792 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57691 -36.97383 -36.73486 -34.96606 -32.85346 -31.82738 -29.52443 -26.42293 -25.16811 -24.22762 -22.47236 -21.63508 -20.36390 -18.56302 -17.99077 -16.71608 -16.33467 -16.31730 -16.16811 -15.34671 -14.88825 -14.75805 -14.60553 -14.05882 -13.90282 -13.57341 -13.20313 -12.99898 -12.79362 -12.56094 -12.51204 -12.19384 -11.99733 -11.70233 -11.60014 -11.44723 -11.37507 -11.24376 -10.96830 -10.57805 -10.50473 -9.07906 -8.20611 -6.32796 1.39253 1.40507 1.53845 2.40123 3.12342 3.22829 3.44296 3.70384 3.91993 4.11083 4.12619 4.24788 4.26101 4.36059 4.45368 4.52003 4.61792 4.74871 4.85953 4.94673 5.00316 5.06195 5.11551 5.19833 5.26688 5.32133 5.32190 5.42664 5.44474 5.51934 5.67848 5.79332 6.16399 6.32792 6.60781 6.84735 7.16416 7.36561 8.92068 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.005376 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.372319 B = 5206.616103 C = 5539.454784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.034 3.966 10 C 0.088 3.912 11 N -0.674 5.674 12 C 0.093 3.907 13 H 0.066 0.934 14 C -0.141 4.141 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.143 4.143 19 C 0.118 3.882 20 H 0.056 0.944 21 O -0.565 6.565 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.017 0.983 26 H 0.048 0.952 27 H 0.334 0.666 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 -19.639 -1.227 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.041 4.041 11 N -0.304 5.304 12 C -0.018 4.018 13 H 0.085 0.915 14 C -0.180 4.180 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.181 4.181 19 C 0.058 3.942 20 H 0.073 0.927 21 O -0.370 6.370 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.693 -18.941 -0.716 20.456 hybrid contribution 0.146 0.652 -0.670 0.946 sum 7.839 -18.289 -1.385 19.946 Atomic orbital electron populations 1.70127 1.07908 1.27781 1.51435 1.26011 0.95788 1.03476 0.94522 0.85332 0.78958 0.78417 0.77904 1.18579 1.20097 1.20253 1.21634 0.93461 0.92262 1.50955 0.92250 1.18898 0.94262 0.92414 0.94792 1.21755 0.95476 0.88840 0.98007 1.60418 1.19271 1.00953 1.49712 1.21473 0.94418 0.90512 0.95380 0.91543 1.21150 0.99931 1.00393 0.96564 1.20451 0.96824 0.96460 1.01641 1.21358 1.02900 0.96242 0.94640 1.21302 0.96146 1.02070 0.95929 1.22616 0.96396 0.99932 0.99202 1.21688 0.87903 0.93017 0.91560 0.92651 1.86882 1.48959 1.37102 1.64045 0.92696 0.99174 0.99147 0.96475 0.93344 0.84846 0.91079 0.93402 0.91126 0.92745 0.91188 0.90134 0.90405 0.93111 0.89944 0.92425 0.77533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.88 13.29 21.45 0.28 -58.60 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.54 -32.59 9.11 25.60 0.23 -32.35 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.93 5.23 29.85 0.16 2.08 16 10 C 0.09 4.05 5.39 86.31 0.47 4.51 16 11 N -0.67 -26.58 5.29 -493.62 -2.61 -29.20 16 12 C 0.09 2.80 2.04 44.52 0.09 2.89 16 13 H 0.07 2.16 6.66 -2.39 -0.02 2.14 16 14 C -0.14 -3.53 4.62 28.74 0.13 -3.39 16 15 C -0.12 -2.27 5.26 28.73 0.15 -2.12 16 16 C -0.11 -1.77 5.61 30.19 0.17 -1.60 16 17 C -0.12 -1.97 5.32 30.14 0.16 -1.81 16 18 C -0.14 -2.73 5.44 31.32 0.17 -2.56 16 19 C 0.12 2.93 2.86 30.14 0.09 3.01 16 20 H 0.06 1.22 6.63 -2.39 -0.02 1.21 16 21 O -0.56 -16.73 12.31 -148.98 -1.83 -18.56 16 22 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 24 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 25 H 0.02 0.76 7.34 -2.39 -0.02 0.74 16 26 H 0.05 2.26 8.06 -2.38 -0.02 2.24 16 27 H 0.33 13.00 8.49 -89.69 -0.76 12.23 16 28 H 0.07 1.62 7.47 -2.39 -0.02 1.60 16 29 H 0.05 1.38 7.23 -2.38 -0.02 1.36 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 31 H 0.05 1.15 7.46 -2.39 -0.02 1.13 16 32 H 0.07 1.04 6.98 -2.39 -0.02 1.03 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.00 6.63 -2.39 -0.02 0.98 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.38 7.38 9.04 -74.06 -0.67 6.71 16 Total: -1.00 -70.28 293.13 -0.25 -70.53 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.39 Total: 19.12 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 2.28 Total: -30.89 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -2.33 Total: -87.79 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.83 Total: -18.56 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.28 -0.25 -70.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130716608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.895 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds