Wall clock time and date at job start Mon Mar 30 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48499 * 109.46980 * 239.99910 * 3 2 1 5 5 H 1.48499 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47259 * 120.00116 * 3 2 1 7 7 C 1.37883 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46939 * 180.02562 * 9 7 2 11 11 N 1.46891 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.46908 * 111.00076 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.62446 * 324.61277 * 12 11 10 14 14 C 1.54238 * 109.62495 * 84.99996 * 12 11 10 15 15 C 1.45542 * 112.40586 * 199.70383 * 14 12 11 16 16 C 1.54245 * 112.32700 * 298.11292 * 15 14 12 17 17 C 1.50329 * 108.60021 * 80.05734 * 16 15 14 18 18 C 1.54069 * 112.43493 * 265.76744 * 17 16 15 19 19 C 1.50474 * 109.62831 * 204.02623 * 12 11 10 20 20 H 1.09000 * 108.88144 * 266.91701 * 19 12 11 21 21 O 1.42901 * 108.87806 * 25.46465 * 19 12 11 22 22 H 0.97001 * 120.00034 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47095 * 60.00038 * 9 7 2 24 24 H 1.08997 * 109.46933 * 299.99484 * 9 7 2 25 25 H 1.08994 * 109.47538 * 59.99358 * 10 9 7 26 26 H 1.09005 * 109.46477 * 299.99621 * 10 9 7 27 27 H 1.00903 * 111.00554 * 56.04289 * 11 10 9 28 28 H 1.09006 * 108.89546 * 78.95298 * 14 12 11 29 29 H 1.09001 * 108.89925 * 320.45880 * 14 12 11 30 30 H 1.09002 * 108.89596 * 58.81954 * 15 14 12 31 31 H 1.09003 * 108.89788 * 177.40988 * 15 14 12 32 32 H 1.09001 * 109.62898 * 199.64496 * 16 15 14 33 33 H 1.08999 * 109.62907 * 320.22109 * 16 15 14 34 34 H 1.09001 * 108.92903 * 144.98984 * 17 16 15 35 35 H 1.08999 * 108.80853 * 26.45821 * 17 16 15 36 36 H 1.08997 * 108.81151 * 280.83031 * 18 17 16 37 37 H 1.08996 * 108.72480 * 162.49001 * 18 17 16 38 38 H 0.96703 * 114.00372 * 180.02562 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5108 -4.9342 -0.0020 12 6 2.4353 -6.0759 -0.0024 13 1 3.3162 -5.8334 -0.5968 14 6 2.8596 -6.3994 1.4448 15 6 4.0856 -7.1817 1.5017 16 6 3.9371 -8.5544 0.8140 17 6 4.0737 -8.3640 -0.6709 18 6 2.7114 -8.1896 -1.3691 19 6 1.7474 -7.2831 -0.5799 20 1 1.3063 -7.8603 0.2328 21 8 0.7053 -6.8470 -1.4551 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8880 25 1 2.8713 -3.6047 0.8889 26 1 2.8725 -3.6039 -0.8910 27 1 0.8746 -4.9842 -0.7836 28 1 2.0605 -6.9597 1.9301 29 1 3.0117 -5.4651 1.9853 30 1 4.8830 -6.6247 1.0097 31 1 4.3568 -7.3376 2.5459 32 1 4.7182 -9.2275 1.1677 33 1 2.9574 -8.9741 1.0419 34 1 4.5781 -9.2328 -1.0939 35 1 4.6814 -7.4785 -0.8573 36 1 2.2511 -9.1700 -1.4915 37 1 2.8764 -7.7538 -2.3544 38 1 0.2117 -7.5682 -1.8690 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130716820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:46 Heat of formation + Delta-G solvation = -96.491480 kcal Electronic energy + Delta-G solvation = -16355.686775 eV Core-core repulsion = 13809.933383 eV Total energy + Delta-G solvation = -2545.753391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63748 -37.00414 -36.83529 -34.92788 -32.87296 -31.87858 -29.62213 -26.48505 -25.13158 -24.30990 -22.39327 -21.41803 -20.43760 -18.57387 -18.03622 -17.27408 -16.47563 -16.30284 -15.66042 -15.38037 -14.91358 -14.83754 -14.73568 -14.06000 -13.98971 -13.62110 -13.31909 -13.03805 -12.79532 -12.57564 -12.32805 -12.23631 -12.03550 -11.70104 -11.51822 -11.42109 -11.33783 -11.22929 -11.01452 -10.67631 -10.56689 -9.20814 -8.20551 -6.33128 1.39169 1.43450 1.51483 2.40198 3.10059 3.12185 3.41213 3.69484 3.98682 4.02475 4.12410 4.25782 4.26079 4.41181 4.48727 4.51681 4.61401 4.74549 4.83215 4.94836 5.01571 5.05032 5.14962 5.22271 5.30871 5.33251 5.36877 5.43841 5.45999 5.53428 5.66074 5.78579 6.16496 6.31915 6.59165 6.83390 7.04136 7.36046 8.91737 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041597 B = 0.005381 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.956745 B = 5202.487656 C = 5543.073593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.034 3.966 10 C 0.087 3.913 11 N -0.688 5.688 12 C 0.091 3.909 13 H 0.035 0.965 14 C -0.104 4.104 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.142 4.142 19 C 0.110 3.890 20 H 0.064 0.936 21 O -0.586 6.586 22 H 0.265 0.735 23 H -0.013 1.013 24 H -0.007 1.007 25 H 0.056 0.944 26 H 0.008 0.992 27 H 0.348 0.652 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 -19.823 -0.655 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.042 4.042 11 N -0.324 5.324 12 C -0.019 4.019 13 H 0.052 0.948 14 C -0.142 4.142 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.181 4.181 19 C 0.051 3.949 20 H 0.082 0.918 21 O -0.394 6.394 22 H 0.073 0.927 23 H 0.005 0.995 24 H 0.012 0.988 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.170 0.830 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.539 -19.154 0.188 20.585 hybrid contribution 0.142 0.695 -1.109 1.316 sum 7.681 -18.459 -0.920 20.014 Atomic orbital electron populations 1.70116 1.07921 1.27945 1.51192 1.26022 0.95804 1.03489 0.94430 0.85426 0.78223 0.77690 0.79230 1.19133 1.20544 1.19021 1.21573 0.93468 0.92238 1.51341 0.92226 1.18890 0.94248 0.92412 0.94784 1.21782 0.95519 0.88947 0.97976 1.60489 1.19967 1.01062 1.50833 1.21376 0.93727 0.90261 0.96493 0.94752 1.20437 0.98773 0.99976 0.95045 1.20515 0.96878 0.96406 1.01754 1.21347 1.02948 0.96276 0.94653 1.21286 0.96090 1.02113 0.95994 1.22606 0.96346 1.00047 0.99064 1.21783 0.87834 0.93625 0.91631 0.91779 1.86387 1.49699 1.39002 1.64357 0.92658 0.99512 0.98814 0.92594 0.97334 0.83005 0.91620 0.93581 0.92819 0.90893 0.90076 0.91148 0.90221 0.93219 0.89551 0.92236 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.00 13.29 21.45 0.28 -58.72 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -32.99 9.11 25.60 0.23 -32.76 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.97 5.23 29.85 0.16 2.13 16 10 C 0.09 4.08 5.39 86.31 0.47 4.54 16 11 N -0.69 -27.99 6.27 -493.63 -3.09 -31.08 16 12 C 0.09 2.85 2.10 44.52 0.09 2.95 16 13 H 0.03 1.14 6.67 -2.39 -0.02 1.12 16 14 C -0.10 -2.87 4.87 28.74 0.14 -2.73 16 15 C -0.12 -2.45 5.27 28.74 0.15 -2.30 16 16 C -0.11 -1.83 5.59 30.15 0.17 -1.66 16 17 C -0.12 -1.95 5.32 30.09 0.16 -1.79 16 18 C -0.14 -2.57 5.43 31.32 0.17 -2.40 16 19 C 0.11 2.67 2.86 30.14 0.09 2.75 16 20 H 0.06 1.44 6.63 -2.39 -0.02 1.42 16 21 O -0.59 -15.41 11.11 -148.98 -1.66 -17.07 16 22 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 23 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H 0.06 2.59 7.33 -2.39 -0.02 2.57 16 26 H 0.01 0.40 8.06 -2.38 -0.02 0.38 16 27 H 0.35 14.71 6.53 -89.69 -0.59 14.12 16 28 H 0.07 1.72 7.47 -2.38 -0.02 1.71 16 29 H 0.05 1.49 7.22 -2.39 -0.02 1.47 16 30 H 0.05 1.19 7.47 -2.39 -0.02 1.17 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.08 6.97 -2.39 -0.02 1.06 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 0.98 6.63 -2.39 -0.02 0.96 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.39 6.29 9.04 -74.06 -0.67 5.62 16 Total: -1.00 -69.96 291.22 -0.37 -70.33 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.22 Total: 19.66 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 2.29 Total: -30.77 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -2.81 Total: -89.80 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -1.66 Total: -17.07 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.96 -0.37 -70.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130716820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.162 kcal (2) G-P(sol) polarization free energy of solvation -69.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds