Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34783 * 119.99903 * 2 1 4 4 O 1.21686 * 120.00038 * 180.02562 * 3 2 1 5 5 C 1.46375 * 119.99837 * 0.02562 * 3 2 1 6 6 H 1.07997 * 120.00539 * 359.97438 * 5 3 2 7 7 C 1.40050 * 119.99728 * 180.02562 * 5 3 2 8 8 N 1.30667 * 120.00141 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99675 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47134 * 119.99896 * 9 7 5 12 12 H 1.48507 * 109.46935 * 239.99055 * 9 7 5 13 13 C 1.46499 * 120.00271 * 180.02562 * 2 1 3 14 14 H 1.08992 * 109.47397 * 179.97438 * 13 2 1 15 15 C 1.53000 * 109.46840 * 59.99524 * 13 2 1 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 13 2 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46915 * 59.99882 * 19 18 17 22 22 H 1.09006 * 109.47018 * 270.00128 * 1 2 3 23 23 H 1.08996 * 109.47313 * 29.99543 * 1 2 3 24 24 H 1.08993 * 109.47464 * 150.00440 * 1 2 3 25 25 H 0.96995 * 120.00177 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47398 * 300.00326 * 15 13 2 27 27 H 1.09001 * 109.47194 * 60.00507 * 15 13 2 28 28 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 29 29 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 32 32 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 33 33 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 34 34 H 0.96696 * 114.00040 * 60.00337 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3557 1.1673 -0.0005 5 6 1.4070 2.4349 0.0006 6 1 0.3270 2.4349 0.0006 7 6 2.1072 3.6477 0.0000 8 7 3.4139 3.6478 -0.0005 9 14 1.1731 5.2654 0.0015 10 1 -0.2868 4.9941 0.0025 11 1 1.5332 6.0439 1.2138 12 1 1.5306 6.0445 -1.2112 13 6 2.1975 -1.2687 -0.0006 14 1 3.2691 -1.0695 -0.0009 15 6 1.8278 -2.0704 -1.2501 16 6 2.5924 -3.3957 -1.2505 17 6 2.2223 -4.1983 -0.0015 18 6 2.5919 -3.3965 1.2481 19 6 1.8274 -2.0712 1.2484 20 1 2.0904 -1.5003 2.1388 21 8 0.4223 -2.3319 1.2480 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5137 25 1 3.8989 4.4878 -0.0012 26 1 0.7562 -2.2696 -1.2502 27 1 2.0911 -1.4985 -2.1399 28 1 2.3294 -3.9668 -2.1408 29 1 3.6641 -3.1969 -1.2502 30 1 2.7674 -5.1423 -0.0015 31 1 1.1506 -4.3971 -0.0018 32 1 3.6637 -3.1977 1.2483 33 1 2.3279 -3.9681 2.1378 34 1 0.1160 -2.8382 2.0128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131607960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -99.031882 kcal Electronic energy + Delta-G solvation = -16733.518351 eV Core-core repulsion = 14051.821705 eV Total energy + Delta-G solvation = -2681.696646 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.26869 -36.86616 -34.70422 -33.51697 -32.38936 -29.82596 -29.08745 -26.00165 -25.20551 -22.27023 -22.03318 -19.63055 -18.74000 -16.58038 -16.22816 -15.67519 -15.35337 -14.52861 -14.42471 -14.01458 -13.52389 -13.29932 -12.53570 -12.29507 -12.17475 -11.84181 -11.54496 -11.35985 -11.16634 -11.09224 -10.94369 -10.69471 -10.60878 -10.20737 -10.18863 -10.04970 -9.75096 -9.37235 -8.82204 -7.51513 -7.06297 -6.15030 -4.59241 3.14955 3.23222 3.27937 4.12227 4.52488 4.59191 4.73683 4.99895 5.12629 5.21277 5.50858 5.56069 5.71851 5.80234 5.85591 5.94401 5.97809 6.13091 6.22339 6.29649 6.41987 6.45867 6.48953 6.63818 6.78068 6.87412 6.91521 7.49864 7.76401 7.98493 8.23438 8.46951 9.07147 9.52294 10.62584 10.81833 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.048431 B = 0.007404 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.997417 B = 3780.959319 C = 3965.815926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.638 5.638 3 C 0.555 3.445 4 O -0.583 6.583 5 C -0.541 4.541 6 H 0.073 0.927 7 C 0.086 3.914 8 N -0.769 5.769 9 Si 0.906 3.094 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.159 3.841 14 H 0.100 0.900 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.150 4.150 19 C 0.098 3.902 20 H 0.052 0.948 21 O -0.553 6.553 22 H 0.030 0.970 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.267 0.733 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 -11.792 1.234 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.375 5.375 3 C 0.361 3.639 4 O -0.466 6.466 5 C -0.578 4.578 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.398 5.398 9 Si 0.730 3.270 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.202 1.202 13 C 0.054 3.946 14 H 0.118 0.882 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.188 4.188 19 C 0.038 3.962 20 H 0.070 0.930 21 O -0.357 6.357 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.959 -11.314 0.665 12.005 hybrid contribution -0.517 0.446 0.627 0.926 sum -4.476 -10.869 1.291 11.825 Atomic orbital electron populations 1.21253 0.81713 1.00142 0.99612 1.47871 1.05520 1.04505 1.79604 1.18300 0.86950 0.82459 0.76166 1.90571 1.14130 1.86351 1.55589 1.21065 0.93798 0.89230 1.53701 0.90895 1.25751 0.94598 1.00310 0.92630 1.70037 1.07062 1.27046 1.35628 0.86348 0.80582 0.81862 0.78167 1.18733 1.20204 1.20194 1.20619 0.98473 0.84232 0.91310 0.88225 1.21825 1.00679 0.95153 0.98583 1.21500 1.00300 0.96328 0.97276 1.21417 1.01475 0.97482 0.94503 1.22237 1.01298 0.97154 0.98112 1.22272 0.80689 0.93818 0.99463 0.93004 1.86635 1.23177 1.77299 1.48636 0.95114 0.92275 0.93449 0.92263 0.91384 0.92169 0.92421 0.92208 0.92767 0.91579 0.91121 0.92246 0.79256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.39 8.35 59.85 0.50 2.89 16 2 N -0.64 -15.18 2.76 -175.60 -0.48 -15.66 16 3 C 0.56 16.26 7.61 -12.98 -0.10 16.16 16 4 O -0.58 -19.14 14.35 5.20 0.07 -19.07 16 5 C -0.54 -15.63 8.74 -35.63 -0.31 -15.94 16 6 H 0.07 1.95 6.00 -52.49 -0.31 1.64 16 7 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 8 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 9 Si 0.91 20.47 29.56 -169.99 -5.02 15.44 16 10 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 13 C 0.16 3.23 2.44 -67.93 -0.17 3.06 16 14 H 0.10 2.30 6.90 -51.93 -0.36 1.94 16 15 C -0.12 -2.14 5.04 -26.73 -0.13 -2.28 16 16 C -0.12 -1.62 5.92 -26.73 -0.16 -1.77 16 17 C -0.11 -1.37 5.78 -26.73 -0.15 -1.52 16 18 C -0.15 -1.96 5.64 -26.73 -0.15 -2.11 16 19 C 0.10 1.61 3.38 -26.73 -0.09 1.52 16 20 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 21 O -0.55 -8.19 9.30 -35.23 -0.33 -8.51 16 22 H 0.03 0.61 7.78 -51.93 -0.40 0.21 16 23 H 0.06 1.24 6.09 -51.93 -0.32 0.93 16 24 H 0.05 0.87 5.87 -51.93 -0.30 0.57 16 25 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 26 H 0.07 1.16 6.20 -51.93 -0.32 0.84 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.36 3.77 9.08 45.56 0.41 4.19 16 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -34.30 268.39 -6.02 -40.31 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.10 Total: 3.79 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.86 Total: 2.36 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.17 Total: -38.37 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.25 Total: -27.58 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.30 -6.02 -40.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131607960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.717 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds