Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34783 * 119.99903 * 2 1 4 4 O 1.21686 * 120.00038 * 180.02562 * 3 2 1 5 5 C 1.46375 * 119.99837 * 0.02562 * 3 2 1 6 6 H 1.07997 * 120.00539 * 359.97438 * 5 3 2 7 7 C 1.40050 * 119.99728 * 180.02562 * 5 3 2 8 8 N 1.30667 * 120.00141 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99675 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47134 * 119.99896 * 9 7 5 12 12 H 1.48507 * 109.46935 * 239.99055 * 9 7 5 13 13 C 1.46499 * 120.00271 * 180.02562 * 2 1 3 14 14 H 1.08992 * 109.47397 * 179.97438 * 13 2 1 15 15 C 1.53000 * 109.46840 * 59.99524 * 13 2 1 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 13 2 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46915 * 59.99882 * 19 18 17 22 22 H 1.09006 * 109.47018 * 270.00128 * 1 2 3 23 23 H 1.08996 * 109.47313 * 29.99543 * 1 2 3 24 24 H 1.08993 * 109.47464 * 150.00440 * 1 2 3 25 25 H 0.96995 * 120.00177 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47398 * 300.00326 * 15 13 2 27 27 H 1.09001 * 109.47194 * 60.00507 * 15 13 2 28 28 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 29 29 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 32 32 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 33 33 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 34 34 H 0.96696 * 114.00040 * 60.00337 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3557 1.1673 -0.0005 5 6 1.4070 2.4349 0.0006 6 1 0.3270 2.4349 0.0006 7 6 2.1072 3.6477 0.0000 8 7 3.4139 3.6478 -0.0005 9 14 1.1731 5.2654 0.0015 10 1 -0.2868 4.9941 0.0025 11 1 1.5332 6.0439 1.2138 12 1 1.5306 6.0445 -1.2112 13 6 2.1975 -1.2687 -0.0006 14 1 3.2691 -1.0695 -0.0009 15 6 1.8278 -2.0704 -1.2501 16 6 2.5924 -3.3957 -1.2505 17 6 2.2223 -4.1983 -0.0015 18 6 2.5919 -3.3965 1.2481 19 6 1.8274 -2.0712 1.2484 20 1 2.0904 -1.5003 2.1388 21 8 0.4223 -2.3319 1.2480 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5137 25 1 3.8989 4.4878 -0.0012 26 1 0.7562 -2.2696 -1.2502 27 1 2.0911 -1.4985 -2.1399 28 1 2.3294 -3.9668 -2.1408 29 1 3.6641 -3.1969 -1.2502 30 1 2.7674 -5.1423 -0.0015 31 1 1.1506 -4.3971 -0.0018 32 1 3.6637 -3.1977 1.2483 33 1 2.3279 -3.9681 2.1378 34 1 0.1160 -2.8382 2.0128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131607960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -124.895170 kcal Electronic energy + Delta-G solvation = -16734.639867 eV Core-core repulsion = 14051.821705 eV Total energy + Delta-G solvation = -2682.818162 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77447 -38.77309 -35.96932 -35.35720 -34.60145 -31.14935 -30.53190 -28.10480 -26.96671 -23.63766 -23.44752 -21.22526 -20.36198 -18.39599 -17.81655 -17.54265 -16.94115 -16.10522 -15.90967 -15.69316 -15.07447 -14.80273 -14.09706 -13.83403 -13.68740 -13.26997 -13.19993 -13.09488 -12.95918 -12.76909 -12.62915 -12.14575 -12.02639 -11.90533 -11.88044 -11.43337 -11.11073 -10.94510 -10.63610 -9.76402 -8.99734 -8.29301 -6.84800 1.38345 1.38544 1.56770 2.23454 2.44594 2.86563 3.41699 3.62457 3.80463 3.92305 4.02600 4.24969 4.30039 4.45963 4.56447 4.61109 4.72933 4.85400 4.90012 4.97623 5.08023 5.12420 5.23143 5.24000 5.27296 5.37665 5.43980 5.54221 5.80280 6.15371 6.48319 6.86978 7.00561 7.44530 8.46949 8.67166 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.048431 B = 0.007404 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.997417 B = 3780.959319 C = 3965.815926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.641 5.641 3 C 0.535 3.465 4 O -0.635 6.635 5 C -0.569 4.569 6 H 0.090 0.910 7 C 0.027 3.973 8 N -0.823 5.823 9 Si 0.997 3.003 10 H -0.247 1.247 11 H -0.267 1.267 12 H -0.268 1.268 13 C 0.148 3.852 14 H 0.058 0.942 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.104 4.104 18 C -0.143 4.143 19 C 0.110 3.890 20 H 0.026 0.974 21 O -0.558 6.558 22 H 0.038 0.962 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.274 0.726 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 -12.960 1.527 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.376 5.376 3 C 0.341 3.659 4 O -0.523 6.523 5 C -0.606 4.606 6 H 0.108 0.892 7 C -0.188 4.188 8 N -0.452 5.452 9 Si 0.816 3.184 10 H -0.170 1.170 11 H -0.192 1.192 12 H -0.192 1.192 13 C 0.044 3.956 14 H 0.076 0.924 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.181 4.181 19 C 0.050 3.950 20 H 0.044 0.956 21 O -0.365 6.365 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.173 -12.552 0.970 14.021 hybrid contribution 0.142 0.729 0.541 0.919 sum -6.030 -11.823 1.511 13.358 Atomic orbital electron populations 1.21310 0.79538 1.00931 1.00274 1.47793 1.06952 1.04525 1.78337 1.18723 0.86656 0.84451 0.76041 1.90516 1.16249 1.87596 1.57962 1.21566 0.94804 0.89950 1.54234 0.89206 1.27030 0.95537 1.05009 0.91199 1.70205 1.09561 1.28799 1.36665 0.84986 0.79401 0.75392 0.78605 1.16953 1.19230 1.19247 1.20821 0.95982 0.83756 0.95083 0.92389 1.21724 1.01563 0.96246 0.95690 1.21517 0.99248 0.94776 0.99653 1.21402 1.02423 0.97846 0.92460 1.22195 1.00142 0.95462 1.00332 1.21871 0.82313 0.94910 0.95907 0.95586 1.86545 1.21747 1.78017 1.50203 0.94353 0.93104 0.90957 0.91638 0.90515 0.94782 0.90122 0.93082 0.90033 0.90613 0.92076 0.89015 0.76469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.93 8.35 127.77 1.07 6.00 16 2 N -0.64 -31.35 2.76 -827.69 -2.29 -33.63 16 3 C 0.54 32.77 7.61 86.36 0.66 33.43 16 4 O -0.64 -44.36 14.35 -4.30 -0.06 -44.42 16 5 C -0.57 -33.61 8.74 24.83 0.22 -33.40 16 6 H 0.09 4.81 6.00 -2.91 -0.02 4.79 16 7 C 0.03 1.55 5.50 85.31 0.47 2.02 16 8 N -0.82 -51.81 11.83 21.84 0.26 -51.55 16 9 Si 1.00 42.14 29.56 68.60 2.03 44.17 16 10 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 13 C 0.15 6.17 2.44 44.99 0.11 6.28 16 14 H 0.06 2.88 6.90 -2.39 -0.02 2.87 16 15 C -0.11 -3.91 5.04 30.59 0.15 -3.76 16 16 C -0.11 -2.98 5.92 30.59 0.18 -2.79 16 17 C -0.10 -2.19 5.78 30.60 0.18 -2.01 16 18 C -0.14 -3.42 5.64 30.60 0.17 -3.25 16 19 C 0.11 3.56 3.38 30.59 0.10 3.66 16 20 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 21 O -0.56 -15.05 9.30 -148.98 -1.38 -16.43 16 22 H 0.04 1.48 7.78 -2.38 -0.02 1.46 16 23 H 0.05 2.11 6.09 -2.39 -0.01 2.10 16 24 H 0.07 2.53 5.87 -2.39 -0.01 2.52 16 25 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 26 H 0.08 2.49 6.20 -2.39 -0.01 2.47 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.51 7.68 -2.39 -0.02 1.49 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.39 6.64 9.08 -74.06 -0.67 5.96 16 Total: -1.00 -78.82 268.39 2.29 -76.53 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.43 Total: 19.16 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 3.31 Total: 6.18 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.03 Total: -85.19 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -1.45 Total: -60.85 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -78.82 2.29 -76.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131607960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.364 kcal (2) G-P(sol) polarization free energy of solvation -78.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds