Wall clock time and date at job start Mon Mar 30 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 120.00580 * 2 1 4 4 O 1.21683 * 120.00444 * 179.97438 * 3 2 1 5 5 C 1.46382 * 119.99501 * 359.97438 * 3 2 1 6 6 H 1.08002 * 119.99760 * 359.97438 * 5 3 2 7 7 C 1.40047 * 119.99800 * 180.27774 * 5 3 2 8 8 N 1.30674 * 120.00002 * 359.72267 * 7 5 3 9 9 Si 1.86801 * 119.99850 * 179.72342 * 7 5 3 10 10 H 1.48501 * 109.46896 * 89.99928 * 9 7 5 11 11 H 1.48499 * 109.47039 * 210.00088 * 9 7 5 12 12 H 1.48501 * 109.47275 * 329.99888 * 9 7 5 13 13 C 1.46507 * 119.99734 * 179.97438 * 2 1 3 14 14 H 1.09008 * 109.46964 * 180.02562 * 13 2 1 15 15 C 1.52994 * 109.47284 * 300.00009 * 13 2 1 16 16 C 1.52992 * 109.47418 * 180.02562 * 15 13 2 17 17 C 1.53000 * 109.47194 * 300.00319 * 16 15 13 18 18 C 1.52994 * 109.47199 * 59.99546 * 17 16 15 19 19 C 1.52995 * 109.47136 * 60.00555 * 13 2 1 20 20 H 1.08992 * 109.47420 * 59.99942 * 19 13 2 21 21 O 1.42908 * 109.47028 * 299.99542 * 19 13 2 22 22 H 1.09001 * 109.47017 * 90.00174 * 1 2 3 23 23 H 1.08996 * 109.47203 * 209.99896 * 1 2 3 24 24 H 1.08997 * 109.47346 * 330.00486 * 1 2 3 25 25 H 0.97004 * 119.99542 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47168 * 300.00528 * 15 13 2 27 27 H 1.09008 * 109.47290 * 59.99986 * 15 13 2 28 28 H 1.09005 * 109.47374 * 180.02562 * 16 15 13 29 29 H 1.08996 * 109.47456 * 60.00223 * 16 15 13 30 30 H 1.09008 * 109.47040 * 299.99898 * 17 16 15 31 31 H 1.09005 * 109.47154 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47168 * 179.97438 * 18 17 16 33 33 H 1.09008 * 109.46837 * 60.00228 * 18 17 16 34 34 H 0.96700 * 113.99773 * 180.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3558 1.1671 0.0005 5 6 1.4071 2.4348 -0.0006 6 1 0.3270 2.4348 -0.0014 7 6 2.1073 3.6476 -0.0064 8 7 3.4141 3.6476 -0.0059 9 14 1.1734 5.2654 -0.0150 10 1 0.9254 5.7011 1.3828 11 1 1.9762 6.2967 -0.7200 12 1 -0.1239 5.0843 -0.7146 13 6 2.1974 -1.2688 0.0006 14 1 3.2692 -1.0697 0.0009 15 6 1.8278 -2.0705 1.2501 16 6 2.5932 -3.3953 1.2511 17 6 2.2242 -4.1984 0.0021 18 6 2.5938 -3.3966 -1.2474 19 6 1.8279 -2.0716 -1.2483 20 1 2.0913 -1.5005 -2.1385 21 8 0.4229 -2.3327 -1.2483 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 3.8991 4.4877 -0.0104 26 1 2.0911 -1.4986 2.1399 27 1 0.7561 -2.2697 1.2502 28 1 2.3295 -3.9667 2.1411 29 1 3.6647 -3.1958 1.2512 30 1 1.1525 -4.3979 0.0020 31 1 2.7692 -5.1424 0.0031 32 1 2.3313 -3.9690 -2.1371 33 1 3.6655 -3.1971 -1.2472 34 1 0.1170 -2.8395 -2.0130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131608607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:53 Heat of formation + Delta-G solvation = -99.045059 kcal Electronic energy + Delta-G solvation = -16733.020138 eV Core-core repulsion = 14051.322921 eV Total energy + Delta-G solvation = -2681.697217 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.26651 -36.86555 -34.70459 -33.51646 -32.38758 -29.82494 -29.08720 -25.99987 -25.20601 -22.27084 -22.03144 -19.63012 -18.73890 -16.58021 -16.22630 -15.67346 -15.35045 -14.52809 -14.42405 -14.02052 -13.52405 -13.29852 -12.53415 -12.29431 -12.17052 -11.84169 -11.54447 -11.35708 -11.17846 -11.09218 -10.91888 -10.70332 -10.61071 -10.21229 -10.19239 -10.06006 -9.75113 -9.37239 -8.81262 -7.51702 -7.06327 -6.14805 -4.59182 3.16317 3.23061 3.26688 4.12292 4.52517 4.59291 4.73673 4.99893 5.12663 5.21191 5.50856 5.56091 5.71809 5.80225 5.85619 5.94439 5.97801 6.13074 6.22346 6.29611 6.41929 6.45820 6.48897 6.63782 6.78025 6.87318 6.91525 7.49811 7.76371 7.98444 8.23189 8.46833 9.07112 9.52358 10.62723 10.81922 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.048419 B = 0.007404 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.151002 B = 3780.812322 C = 3965.736248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.638 5.638 3 C 0.555 3.445 4 O -0.583 6.583 5 C -0.542 4.542 6 H 0.072 0.928 7 C 0.087 3.913 8 N -0.769 5.769 9 Si 0.906 3.094 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.159 3.841 14 H 0.100 0.900 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.150 4.150 19 C 0.098 3.902 20 H 0.052 0.948 21 O -0.553 6.553 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.267 0.733 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -11.786 -1.238 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.375 5.375 3 C 0.361 3.639 4 O -0.466 6.466 5 C -0.578 4.578 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.398 5.398 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.054 3.946 14 H 0.118 0.882 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.188 4.188 19 C 0.038 3.962 20 H 0.070 0.930 21 O -0.357 6.357 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.943 -11.306 -0.672 11.992 hybrid contribution -0.529 0.442 -0.627 0.932 sum -4.472 -10.863 -1.299 11.819 Atomic orbital electron populations 1.21252 0.81719 1.00139 0.99610 1.47869 1.05518 1.04505 1.79606 1.18289 0.86946 0.82449 0.76168 1.90570 1.14126 1.86347 1.55600 1.21029 0.93764 0.89247 1.53794 0.90948 1.25748 0.94601 1.00294 0.92632 1.70034 1.07056 1.27143 1.35549 0.86401 0.80211 0.81504 0.78818 1.19748 1.20501 1.18887 1.20621 0.98477 0.84230 0.91314 0.88226 1.21823 1.00672 0.95160 0.98582 1.21501 1.00298 0.96326 0.97276 1.21417 1.01479 0.97479 0.94509 1.22242 1.01293 0.97153 0.98108 1.22279 0.80687 0.93813 0.99464 0.93001 1.86636 1.23182 1.77258 1.48662 0.95116 0.93448 0.92279 0.92212 0.92174 0.91382 0.92421 0.92199 0.91587 0.92768 0.92247 0.91122 0.79255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.39 8.35 59.84 0.50 2.89 16 2 N -0.64 -15.18 2.76 -175.60 -0.48 -15.67 16 3 C 0.56 16.27 7.61 -12.99 -0.10 16.17 16 4 O -0.58 -19.14 14.35 5.20 0.07 -19.07 16 5 C -0.54 -15.64 8.74 -35.63 -0.31 -15.95 16 6 H 0.07 1.93 6.00 -52.49 -0.31 1.62 16 7 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 8 N -0.77 -23.38 11.83 55.55 0.66 -22.72 16 9 Si 0.91 20.47 29.56 -169.99 -5.02 15.45 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 13 C 0.16 3.22 2.43 -67.93 -0.17 3.06 16 14 H 0.10 2.30 6.90 -51.92 -0.36 1.94 16 15 C -0.12 -2.14 5.04 -26.74 -0.13 -2.28 16 16 C -0.12 -1.62 5.92 -26.74 -0.16 -1.77 16 17 C -0.11 -1.37 5.78 -26.73 -0.15 -1.53 16 18 C -0.15 -1.96 5.64 -26.71 -0.15 -2.11 16 19 C 0.10 1.61 3.38 -26.71 -0.09 1.52 16 20 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 21 O -0.55 -8.19 9.30 -35.23 -0.33 -8.52 16 22 H 0.03 0.61 7.78 -51.93 -0.40 0.21 16 23 H 0.05 0.87 5.87 -51.93 -0.30 0.56 16 24 H 0.06 1.24 6.09 -51.93 -0.32 0.92 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.17 6.20 -51.92 -0.32 0.84 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.81 7.68 -51.92 -0.40 0.41 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.36 3.77 9.08 45.56 0.41 4.19 16 LS Contribution 268.41 15.07 4.04 4.04 Total: -1.00 -34.28 268.41 -6.02 -40.30 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.10 Total: 3.82 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.86 Total: 2.36 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.17 Total: -38.39 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.25 Total: -27.58 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.28 -6.02 -40.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131608607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.744 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds