Wall clock time and date at job start Mon Mar 30 2020 03:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47606 * 180.02562 * 11 10 9 13 13 C 1.42904 * 114.00490 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47279 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47174 * 179.97438 * 14 13 12 16 16 H 1.09001 * 110.28146 * 52.87199 * 15 14 13 17 17 C 1.54254 * 110.32467 * 175.00053 * 15 14 13 18 18 C 1.54376 * 105.06253 * 118.89942 * 17 15 14 19 19 N 1.48555 * 104.59437 * 23.84993 * 18 17 15 20 20 C 1.48562 * 104.22594 * 320.51848 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 27 27 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 28 28 H 1.09006 * 109.46528 * 299.99702 * 13 12 11 29 29 H 1.08995 * 109.47478 * 59.99722 * 13 12 11 30 30 H 1.08996 * 109.47060 * 299.99358 * 14 13 12 31 31 H 1.09007 * 109.46967 * 59.99763 * 14 13 12 32 32 H 1.09002 * 110.32264 * 237.79432 * 17 15 14 33 33 H 1.08996 * 110.32489 * 359.89907 * 17 15 14 34 34 H 1.08996 * 110.41334 * 142.63014 * 18 17 15 35 35 H 1.08998 * 110.41108 * 265.07753 * 18 17 15 36 36 H 1.00903 * 111.00780 * 200.96267 * 19 18 17 37 37 H 1.09001 * 110.41295 * 280.70982 * 20 19 18 38 38 H 1.08999 * 110.41527 * 158.25582 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4086 -6.0733 0.0018 13 6 1.7941 -7.3634 0.0018 14 6 2.8770 -8.4442 0.0031 15 6 2.2190 -9.8255 0.0038 16 1 1.4998 -9.9018 -0.8116 17 6 3.2896 -10.9290 -0.1209 18 6 3.1545 -11.7667 1.1688 19 7 1.7595 -11.5324 1.6228 20 6 1.5270 -10.0891 1.3585 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 0.8537 -5.0445 0.8914 27 1 0.8532 -5.0451 -0.8886 28 1 1.1736 -7.4702 0.8917 29 1 1.1742 -7.4707 -0.8883 30 1 3.4978 -8.3376 -0.8864 31 1 3.4965 -8.3368 0.8936 32 1 3.0948 -11.5482 -0.9966 33 1 4.2837 -10.4866 -0.1844 34 1 3.3119 -12.8236 0.9539 35 1 3.8624 -11.4214 1.9222 36 1 1.6590 -11.7409 2.6050 37 1 1.9805 -9.4814 2.1415 38 1 0.4592 -9.8830 1.2863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159469464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:42 Heat of formation + Delta-G solvation = -96.481352 kcal Electronic energy + Delta-G solvation = -15212.308526 eV Core-core repulsion = 12666.555574 eV Total energy + Delta-G solvation = -2545.752952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91525 -38.80578 -35.96055 -34.21234 -33.14435 -30.44555 -28.99699 -27.74447 -24.82516 -23.90053 -22.37308 -21.97033 -20.78441 -18.59161 -17.63712 -17.34272 -16.93483 -16.69823 -16.41245 -15.64843 -15.29985 -14.74741 -14.31107 -14.05193 -13.66321 -13.50721 -13.17403 -13.00704 -12.86851 -12.77509 -12.47507 -12.41499 -12.04114 -11.88293 -11.71986 -11.57290 -11.47523 -11.37234 -11.16715 -10.58054 -10.52959 -9.57713 -8.22466 -6.33568 1.40261 1.40467 1.54392 2.39313 2.69184 3.10959 3.36156 3.65681 3.77177 4.04830 4.12193 4.17776 4.21021 4.32615 4.43365 4.47282 4.52836 4.58596 4.68792 4.76353 4.85675 4.90954 4.91446 4.99102 5.06724 5.10835 5.16328 5.22712 5.32636 5.48164 5.68195 5.76485 5.81212 6.17904 6.32786 6.37167 6.82345 7.35735 8.89890 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.082929 B = 0.003261 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.557924 B = 8583.377605 C = 8722.256065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.097 4.097 11 C 0.073 3.927 12 O -0.409 6.409 13 C 0.053 3.947 14 C -0.101 4.101 15 C -0.087 4.087 16 H 0.081 0.919 17 C -0.121 4.121 18 C 0.033 3.967 19 N -0.678 5.678 20 C 0.035 3.965 21 H 0.265 0.735 22 H -0.003 1.003 23 H -0.003 1.003 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.344 0.656 37 H 0.043 0.957 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 -22.157 1.693 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.135 4.135 11 C -0.003 4.003 12 O -0.329 6.329 13 C -0.023 4.023 14 C -0.139 4.139 15 C -0.106 4.106 16 H 0.100 0.900 17 C -0.159 4.159 18 C -0.096 4.096 19 N -0.308 5.308 20 C -0.094 4.094 21 H 0.074 0.926 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.160 0.840 37 H 0.061 0.939 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.789 -22.323 1.109 22.858 hybrid contribution 0.260 1.468 0.741 1.665 sum 5.049 -20.855 1.850 21.537 Atomic orbital electron populations 1.70094 1.07766 1.27859 1.51554 1.25995 0.95838 1.03426 0.94579 0.85355 0.78995 0.78522 0.77910 1.18693 1.20189 1.20179 1.21687 0.93581 0.92271 1.50775 0.92260 1.18932 0.94239 0.92525 0.95319 1.21401 0.98627 0.92227 1.01237 1.22473 0.91682 0.86136 1.00002 1.87826 1.34842 1.14702 1.95548 1.22709 0.96362 0.82543 1.00668 1.21574 0.97311 0.91913 1.03126 1.21808 0.97663 0.93201 0.97939 0.90020 1.22385 0.98844 0.96289 0.98344 1.22974 0.89230 1.01027 0.96414 1.63708 1.24314 1.18253 1.24491 1.23057 1.01029 0.89023 0.96323 0.92629 0.98458 0.98460 0.92767 0.92803 0.93364 0.93324 0.92946 0.92874 0.90882 0.91543 0.90462 0.90456 0.89378 0.93711 0.84033 0.93909 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.10 -4.28 5.52 30.59 0.17 -4.12 16 11 C 0.07 2.70 5.94 71.98 0.43 3.13 16 12 O -0.41 -13.84 10.34 -148.98 -1.54 -15.38 16 13 C 0.05 1.34 5.81 71.98 0.42 1.76 16 14 C -0.10 -2.06 4.76 30.59 0.15 -1.91 16 15 C -0.09 -1.47 3.06 -9.90 -0.03 -1.50 16 16 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.12 -1.74 6.65 31.49 0.21 -1.53 16 18 C 0.03 0.45 7.47 86.45 0.65 1.09 16 19 N -0.68 -10.71 7.62 -500.86 -3.82 -14.53 16 20 C 0.04 0.59 6.28 86.45 0.54 1.13 16 21 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 22 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 23 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.23 7.58 -2.38 -0.02 1.21 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.39 7.98 -2.38 -0.02 1.37 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.04 7.71 -2.39 -0.02 1.02 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.34 4.41 8.92 -89.69 -0.80 3.61 16 37 H 0.04 0.74 7.75 -2.39 -0.02 0.72 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.89 308.98 0.52 -64.36 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.20 Total: 7.09 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.37 Total: -31.47 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -3.53 Total: -71.33 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -1.54 Total: -15.38 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.89 0.52 -64.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159469464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.119 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds