Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99783 * 3 2 1 5 5 H 1.48504 * 109.46971 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99760 * 3 2 1 7 7 C 1.38945 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 9 14 14 N 1.45404 * 111.00079 * 179.97438 * 13 12 10 15 15 C 1.46836 * 110.99953 * 244.20723 * 14 13 12 16 16 C 1.53036 * 109.52481 * 174.16095 * 15 14 13 17 17 C 1.53118 * 109.27820 * 59.18024 * 16 15 14 18 18 C 1.53121 * 109.15838 * 302.34746 * 17 16 15 19 19 C 1.46845 * 110.99689 * 119.99594 * 14 13 12 20 20 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 22 22 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 23 23 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 24 24 H 1.00893 * 111.00195 * 56.04123 * 13 12 10 25 25 H 1.09008 * 109.46359 * 294.17774 * 15 14 13 26 26 H 1.09002 * 109.46553 * 54.14096 * 15 14 13 27 27 H 1.08997 * 109.50533 * 299.23819 * 16 15 14 28 28 H 1.08999 * 109.53698 * 179.13515 * 16 15 14 29 29 H 1.09001 * 109.52264 * 182.44507 * 17 16 15 30 30 H 1.09001 * 109.52568 * 62.24582 * 17 16 15 31 31 H 1.09006 * 109.50558 * 297.71166 * 18 17 16 32 32 H 1.09007 * 109.50235 * 177.59765 * 18 17 16 33 33 H 1.08998 * 109.46632 * 305.85594 * 19 14 13 34 34 H 1.09001 * 109.46368 * 65.82564 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0123 14 7 1.5050 -7.2576 0.0190 15 6 1.7788 -7.9982 1.2570 16 6 0.9226 -9.2661 1.2945 17 6 1.2501 -10.1334 0.0759 18 6 1.0026 -9.3225 -1.1992 19 6 1.8564 -8.0530 -1.1644 20 1 -0.4850 0.8401 -0.0004 21 1 0.3533 -2.3906 -0.0002 22 1 0.6169 -4.9164 0.8970 23 1 0.6171 -4.9250 -0.8829 24 1 2.8330 -5.9087 0.7933 25 1 2.8336 -8.2711 1.2913 26 1 1.5379 -7.3717 2.1158 27 1 -0.1325 -8.9935 1.2742 28 1 1.1369 -9.8238 2.2061 29 1 0.6116 -11.0169 0.0754 30 1 2.2957 -10.4385 0.1162 31 1 -0.0514 -9.0507 -1.2588 32 1 1.2745 -9.9203 -2.0692 33 1 1.6718 -7.4663 -2.0643 34 1 2.9108 -8.3256 -1.1187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214805600.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = -16.166362 kcal Electronic energy + Delta-G solvation = -15627.054808 eV Core-core repulsion = 12981.244232 eV Total energy + Delta-G solvation = -2645.810576 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.79813 -37.96876 -34.53136 -33.74913 -31.25348 -30.86792 -30.33971 -26.14760 -24.14316 -23.10141 -22.44354 -19.80549 -19.14398 -17.85075 -16.85317 -15.42743 -15.32350 -14.72290 -14.58133 -14.32133 -14.13179 -13.73662 -13.47326 -13.26938 -12.85216 -12.32584 -12.07556 -11.66257 -11.51639 -11.26728 -11.01784 -10.87785 -10.55915 -10.52936 -10.42343 -10.19243 -9.48649 -9.11336 -8.32089 -7.95601 -7.84275 -6.39526 -3.80559 3.21834 3.26878 3.28732 3.37625 3.93944 4.21957 4.62874 4.76923 4.83488 5.12156 5.16012 5.22426 5.29491 5.33115 5.48100 5.57414 5.68839 5.80235 5.86497 5.90146 6.00571 6.02815 6.11938 6.21207 6.26325 6.36237 6.96698 7.26006 7.56948 7.91038 8.07656 8.63078 9.19328 9.56122 10.07441 10.78104 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.070697 B = 0.004603 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.960631 B = 6081.290822 C = 6139.422821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.588 6.588 12 C 0.063 3.937 13 N -0.508 5.508 14 N -0.384 5.384 15 C 0.029 3.971 16 C -0.112 4.112 17 C -0.122 4.122 18 C -0.117 4.117 19 C 0.070 3.930 20 H 0.272 0.728 21 H 0.393 0.607 22 H 0.048 0.952 23 H 0.090 0.910 24 H 0.340 0.660 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 -16.264 0.953 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.226 3.774 11 O -0.473 6.473 12 C -0.070 4.070 13 N -0.230 5.230 14 N -0.199 5.199 15 C -0.100 4.100 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.059 4.059 20 H 0.082 0.918 21 H 0.227 0.773 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.159 0.841 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.200 -15.974 0.250 16.021 hybrid contribution 0.332 0.702 1.035 1.294 sum -0.869 -15.272 1.285 15.351 Atomic orbital electron populations 1.69613 1.05935 1.28268 1.50421 1.25263 0.95631 0.99704 0.97271 0.85911 0.78753 0.80437 0.79067 1.19870 1.20964 1.19933 1.19661 0.93352 0.82220 1.47781 0.87970 1.41822 1.09271 1.04463 1.64184 1.19796 0.88296 0.84753 0.84512 1.90521 1.13832 1.87202 1.55733 1.21582 0.94450 0.89002 1.01939 1.63577 1.14803 0.95357 1.49259 1.65003 1.52844 1.00147 1.01922 1.22557 0.98342 0.95835 0.93279 1.21548 1.00684 0.94893 0.97974 1.21601 1.01297 0.98063 0.95043 1.21635 1.01058 0.95436 0.97431 1.21983 0.97182 0.93135 0.93567 0.91804 0.77321 0.93425 0.89146 0.84145 0.94353 0.90910 0.91008 0.91564 0.91865 0.92283 0.91086 0.91353 0.90160 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C 0.44 10.76 7.82 -10.98 -0.09 10.68 16 11 O -0.59 -16.35 15.78 5.55 0.09 -16.26 16 12 C 0.06 1.21 6.62 -4.97 -0.03 1.18 16 13 N -0.51 -9.09 6.37 -11.40 -0.07 -9.16 16 14 N -0.38 -5.62 4.78 -113.82 -0.54 -6.16 16 15 C 0.03 0.36 5.41 -3.84 -0.02 0.34 16 16 C -0.11 -1.10 6.09 -26.65 -0.16 -1.26 16 17 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 18 C -0.12 -1.17 6.09 -26.65 -0.16 -1.34 16 19 C 0.07 0.91 5.90 -3.84 -0.02 0.89 16 20 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 21 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 22 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 23 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 24 H 0.34 6.19 7.84 -174.66 -1.37 4.82 16 25 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 284.17 15.07 4.28 4.28 Total: -1.00 -30.74 284.17 -7.77 -38.51 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.28 Total: 10.15 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.89 Total: 1.08 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.05 Total: -53.98 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.09 Total: -16.26 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.74 -7.77 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214805600.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.344 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds