Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 11 11 O 1.42903 * 109.46702 * 299.99135 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47335 * 184.99796 * 12 9 7 14 14 C 1.46897 * 111.00094 * 179.97438 * 13 12 9 15 15 C 1.54243 * 108.89559 * 276.39056 * 14 13 12 16 16 C 1.50555 * 108.48145 * 159.17612 * 15 14 13 17 17 C 1.54069 * 112.41265 * 94.27229 * 16 15 14 18 18 C 1.54070 * 112.81330 * 318.27989 * 17 16 15 19 19 C 1.50471 * 112.49774 * 318.28204 * 18 17 16 20 20 C 1.45544 * 108.89683 * 153.60441 * 14 13 12 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 0.96692 * 114.00899 * 300.00407 * 11 9 7 23 23 H 1.09006 * 109.46551 * 304.99729 * 12 9 7 24 24 H 1.09000 * 109.47511 * 64.99378 * 12 9 7 25 25 H 1.00905 * 110.99647 * 303.95333 * 13 12 9 26 26 H 1.08997 * 108.87450 * 34.99902 * 14 13 12 27 27 H 1.08995 * 109.63200 * 278.97660 * 15 14 13 28 28 H 1.09002 * 109.62676 * 39.55578 * 15 14 13 29 29 H 1.08997 * 108.92755 * 333.51717 * 16 15 14 30 30 H 1.09003 * 108.83946 * 214.96552 * 16 15 14 31 31 H 1.09000 * 108.81572 * 197.42036 * 17 16 15 32 32 H 1.09006 * 108.73111 * 79.07445 * 17 16 15 33 33 H 1.09003 * 108.87570 * 197.50606 * 18 17 16 34 34 H 1.08995 * 108.88108 * 79.06790 * 18 17 16 35 35 H 1.09006 * 109.62578 * 334.44713 * 19 18 17 36 36 H 1.08999 * 109.63388 * 213.87057 * 19 18 17 37 37 H 1.09008 * 108.89153 * 303.44471 * 20 14 13 38 38 H 1.09000 * 108.89384 * 62.02628 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5564 -0.8919 11 8 0.4292 -2.5756 1.1649 12 6 2.2453 -3.6621 -0.0015 13 7 1.5149 -4.9308 -0.1232 14 6 2.4395 -6.0723 -0.1271 15 6 2.9763 -6.2755 -1.5587 16 6 4.2581 -7.0614 -1.4808 17 6 4.0311 -8.5747 -1.6600 18 6 2.7884 -9.0858 -0.9063 19 6 2.6588 -8.4824 0.4661 20 6 1.7405 -7.2467 0.3732 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9209 -2.5308 1.9962 23 1 2.9300 -3.5548 -0.8428 24 1 2.8109 -3.6565 0.9303 25 1 0.8276 -5.0241 0.6097 26 1 3.2761 -5.8506 0.5355 27 1 2.2436 -6.8246 -2.1500 28 1 3.1695 -5.3062 -2.0183 29 1 4.7213 -6.8869 -0.5097 30 1 4.9336 -6.7112 -2.2613 31 1 4.9085 -9.1076 -1.2935 32 1 3.9099 -8.7870 -2.7223 33 1 2.8553 -10.1695 -0.8101 34 1 1.8985 -8.8394 -1.4854 35 1 3.6420 -8.1815 0.8281 36 1 2.2224 -9.2126 1.1475 37 1 1.3443 -7.0261 1.3644 38 1 0.9105 -7.4750 -0.2955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219557498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -82.658344 kcal Electronic energy + Delta-G solvation = -16364.511651 eV Core-core repulsion = 13819.358110 eV Total energy + Delta-G solvation = -2545.153541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23694 -36.52437 -34.41852 -32.16028 -32.08163 -30.52797 -27.37366 -24.88128 -24.20717 -22.81879 -20.81835 -20.22487 -19.22900 -17.25378 -16.02029 -15.42806 -15.13508 -14.70408 -14.33694 -13.81574 -13.74267 -13.42753 -12.96905 -12.63577 -12.54137 -12.22449 -12.07160 -11.80987 -11.30613 -10.95236 -10.76152 -10.62816 -10.55482 -10.39112 -10.27512 -10.17088 -10.09650 -10.05446 -9.19156 -8.44270 -8.04153 -7.82877 -6.32700 -4.15767 3.43247 3.44792 3.64074 4.39675 4.55551 4.70600 4.78916 4.96512 5.14691 5.23609 5.30120 5.33372 5.37273 5.46053 5.68605 5.71646 5.88726 5.96686 5.97747 6.06362 6.10988 6.14674 6.16234 6.19997 6.28851 6.30470 6.40222 6.47861 6.57861 6.80467 7.44966 7.69246 7.91979 8.12027 8.38318 8.88931 9.12842 9.70293 11.07599 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050613 B = 0.005358 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.084074 B = 5225.017268 C = 5574.307221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.034 3.966 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.650 4.650 8 H 0.047 0.953 9 C 0.213 3.787 10 H 0.058 0.942 11 O -0.584 6.584 12 C 0.046 3.954 13 N -0.689 5.689 14 C 0.089 3.911 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.120 4.120 21 H 0.285 0.715 22 H 0.349 0.651 23 H 0.066 0.934 24 H 0.015 0.985 25 H 0.340 0.660 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -16.008 -0.352 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.174 4.174 3 Si 0.895 3.105 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.688 4.688 8 H 0.066 0.934 9 C 0.156 3.844 10 H 0.075 0.925 11 O -0.388 6.388 12 C -0.083 4.083 13 N -0.320 5.320 14 C -0.020 4.020 15 C -0.142 4.142 16 C -0.157 4.157 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.158 4.158 21 H 0.096 0.904 22 H 0.194 0.806 23 H 0.084 0.916 24 H 0.034 0.966 25 H 0.159 0.841 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.196 -14.382 -1.503 15.732 hybrid contribution 1.111 -1.631 1.287 2.356 sum 7.307 -16.013 -0.216 17.603 Atomic orbital electron populations 1.70628 1.06910 1.32318 1.42815 1.25781 0.96510 1.02419 0.92738 0.83606 0.74940 0.75495 0.76469 1.20723 1.21511 1.21443 1.22424 0.94307 0.92624 1.59485 0.93424 1.19612 0.88678 0.90716 0.85355 0.92471 1.86493 1.39626 1.96495 1.16137 1.22708 0.97222 0.89679 0.98720 1.60606 1.16385 1.01457 1.53600 1.20397 0.94491 0.91086 0.96064 1.21322 0.96206 1.00064 0.96599 1.21358 0.98167 0.94544 1.01664 1.21909 0.97623 0.95816 0.99913 1.21341 0.98676 0.99310 0.96273 1.21266 0.99992 0.96893 0.96970 1.20686 0.99048 0.95010 1.01082 0.90356 0.80610 0.91586 0.96639 0.84080 0.95027 0.91605 0.91462 0.92403 0.92446 0.92709 0.92485 0.92721 0.91866 0.91801 0.92078 0.92583 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.53 55.43 0.75 -26.88 16 2 C 0.03 1.00 5.40 -17.82 -0.10 0.90 16 3 Si 1.07 25.25 29.90 -169.99 -5.08 20.17 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.65 -18.39 8.76 -34.44 -0.30 -18.70 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.21 5.49 2.67 -27.88 -0.07 5.41 16 10 H 0.06 1.63 8.01 -51.93 -0.42 1.22 16 11 O -0.58 -14.72 11.53 -35.23 -0.41 -15.12 16 12 C 0.05 0.97 5.04 -3.83 -0.02 0.95 16 13 N -0.69 -12.60 6.27 -109.80 -0.69 -13.29 16 14 C 0.09 1.33 2.02 -70.58 -0.14 1.19 16 15 C -0.10 -1.46 5.16 -27.30 -0.14 -1.60 16 16 C -0.12 -1.39 5.32 -27.40 -0.15 -1.53 16 17 C -0.11 -1.14 5.85 -25.61 -0.15 -1.29 16 18 C -0.12 -1.16 5.31 -27.44 -0.15 -1.31 16 19 C -0.11 -1.18 5.61 -27.35 -0.15 -1.33 16 20 C -0.12 -1.52 4.49 -29.60 -0.13 -1.65 16 21 H 0.28 8.99 6.47 -40.82 -0.26 8.73 16 22 H 0.35 7.92 9.04 45.56 0.41 8.33 16 23 H 0.07 1.43 7.21 -51.93 -0.37 1.06 16 24 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 25 H 0.34 6.24 7.71 -39.29 -0.30 5.94 16 26 H 0.03 0.50 7.08 -51.93 -0.37 0.13 16 27 H 0.07 0.91 6.97 -51.93 -0.36 0.55 16 28 H 0.07 1.07 7.11 -51.93 -0.37 0.71 16 29 H 0.06 0.69 6.63 -51.93 -0.34 0.34 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.66 6.62 -51.93 -0.34 0.32 16 35 H 0.06 0.68 6.98 -51.93 -0.36 0.32 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.70 7.93 -51.92 -0.41 0.29 16 38 H 0.07 0.90 7.46 -51.93 -0.39 0.51 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -30.18 289.89 -8.19 -38.37 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.63 Total: 11.34 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -1.50 Total: -18.96 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.06 Total: -40.17 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.41 Total: -15.12 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.18 -8.19 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219557498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.285 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds