Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 11 11 O 1.42903 * 109.46702 * 299.99135 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47335 * 184.99796 * 12 9 7 14 14 C 1.46897 * 111.00094 * 179.97438 * 13 12 9 15 15 C 1.54243 * 108.89559 * 276.39056 * 14 13 12 16 16 C 1.50555 * 108.48145 * 159.17612 * 15 14 13 17 17 C 1.54069 * 112.41265 * 94.27229 * 16 15 14 18 18 C 1.54070 * 112.81330 * 318.27989 * 17 16 15 19 19 C 1.50471 * 112.49774 * 318.28204 * 18 17 16 20 20 C 1.45544 * 108.89683 * 153.60441 * 14 13 12 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 0.96692 * 114.00899 * 300.00407 * 11 9 7 23 23 H 1.09006 * 109.46551 * 304.99729 * 12 9 7 24 24 H 1.09000 * 109.47511 * 64.99378 * 12 9 7 25 25 H 1.00905 * 110.99647 * 303.95333 * 13 12 9 26 26 H 1.08997 * 108.87450 * 34.99902 * 14 13 12 27 27 H 1.08995 * 109.63200 * 278.97660 * 15 14 13 28 28 H 1.09002 * 109.62676 * 39.55578 * 15 14 13 29 29 H 1.08997 * 108.92755 * 333.51717 * 16 15 14 30 30 H 1.09003 * 108.83946 * 214.96552 * 16 15 14 31 31 H 1.09000 * 108.81572 * 197.42036 * 17 16 15 32 32 H 1.09006 * 108.73111 * 79.07445 * 17 16 15 33 33 H 1.09003 * 108.87570 * 197.50606 * 18 17 16 34 34 H 1.08995 * 108.88108 * 79.06790 * 18 17 16 35 35 H 1.09006 * 109.62578 * 334.44713 * 19 18 17 36 36 H 1.08999 * 109.63388 * 213.87057 * 19 18 17 37 37 H 1.09008 * 108.89153 * 303.44471 * 20 14 13 38 38 H 1.09000 * 108.89384 * 62.02628 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5564 -0.8919 11 8 0.4292 -2.5756 1.1649 12 6 2.2453 -3.6621 -0.0015 13 7 1.5149 -4.9308 -0.1232 14 6 2.4395 -6.0723 -0.1271 15 6 2.9763 -6.2755 -1.5587 16 6 4.2581 -7.0614 -1.4808 17 6 4.0311 -8.5747 -1.6600 18 6 2.7884 -9.0858 -0.9063 19 6 2.6588 -8.4824 0.4661 20 6 1.7405 -7.2467 0.3732 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9209 -2.5308 1.9962 23 1 2.9300 -3.5548 -0.8428 24 1 2.8109 -3.6565 0.9303 25 1 0.8276 -5.0241 0.6097 26 1 3.2761 -5.8506 0.5355 27 1 2.2436 -6.8246 -2.1500 28 1 3.1695 -5.3062 -2.0183 29 1 4.7213 -6.8869 -0.5097 30 1 4.9336 -6.7112 -2.2613 31 1 4.9085 -9.1076 -1.2935 32 1 3.9099 -8.7870 -2.7223 33 1 2.8553 -10.1695 -0.8101 34 1 1.8985 -8.8394 -1.4854 35 1 3.6420 -8.1815 0.8281 36 1 2.2224 -9.2126 1.1475 37 1 1.3443 -7.0261 1.3644 38 1 0.9105 -7.4750 -0.2955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219557498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -104.118233 kcal Electronic energy + Delta-G solvation = -16365.442222 eV Core-core repulsion = 13819.358110 eV Total energy + Delta-G solvation = -2546.084112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36717 -38.37963 -35.82758 -34.28656 -33.12735 -31.90625 -29.14070 -26.23921 -25.51743 -24.27198 -22.65975 -21.39768 -20.12516 -19.38924 -17.42604 -16.82940 -16.63189 -16.07962 -15.74091 -15.51955 -15.19544 -14.82448 -14.34366 -14.09116 -13.93521 -13.61181 -13.45939 -13.02251 -12.88288 -12.58490 -12.24120 -12.03489 -11.93725 -11.71408 -11.41773 -11.40862 -11.26972 -11.20898 -11.07396 -10.64519 -10.12689 -9.34891 -8.63494 -6.48405 1.52706 1.60566 1.80352 2.55387 3.13282 3.16912 3.70836 3.82668 3.96431 4.07021 4.21196 4.23811 4.32884 4.35901 4.37988 4.45232 4.49402 4.62017 4.86511 4.90099 4.99238 5.01349 5.13524 5.20672 5.26041 5.31081 5.32567 5.36485 5.43245 5.49700 5.57219 5.79833 6.07911 6.20401 6.47674 6.56844 7.13890 7.48560 8.74463 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050613 B = 0.005358 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.084074 B = 5225.017268 C = 5574.307221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.017 4.017 3 Si 1.117 2.883 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.662 4.662 8 H 0.050 0.950 9 C 0.215 3.785 10 H 0.021 0.979 11 O -0.590 6.590 12 C 0.066 3.934 13 N -0.695 5.695 14 C 0.093 3.907 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.107 4.107 20 C -0.119 4.119 21 H 0.267 0.733 22 H 0.361 0.639 23 H 0.059 0.941 24 H 0.020 0.980 25 H 0.340 0.660 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 -17.140 -0.001 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.938 3.062 4 H -0.210 1.210 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.700 4.700 8 H 0.068 0.932 9 C 0.158 3.842 10 H 0.039 0.961 11 O -0.395 6.395 12 C -0.063 4.063 13 N -0.327 5.327 14 C -0.016 4.016 15 C -0.139 4.139 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.145 4.145 20 C -0.156 4.156 21 H 0.078 0.922 22 H 0.207 0.793 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.159 0.841 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.753 -15.551 -1.148 17.414 hybrid contribution 0.610 -1.338 1.176 1.883 sum 8.363 -16.888 0.028 18.845 Atomic orbital electron populations 1.70778 1.08050 1.31210 1.45499 1.27351 0.96480 1.06533 0.91553 0.82960 0.74112 0.71152 0.77964 1.20997 1.19313 1.19583 1.22822 0.94643 0.93899 1.58602 0.93181 1.19423 0.88548 0.91955 0.84313 0.96130 1.86433 1.39952 1.96558 1.16594 1.22288 0.95827 0.89634 0.98578 1.60574 1.16987 1.01445 1.53694 1.20510 0.93828 0.90602 0.96688 1.21286 0.97621 0.99227 0.95730 1.21318 0.96630 0.95723 1.01775 1.21895 0.98350 0.94250 1.00485 1.21349 0.98237 1.00434 0.95621 1.21241 0.99436 0.95958 0.97850 1.20659 0.99220 0.95055 1.00713 0.92249 0.79273 0.92245 0.96200 0.84122 0.95405 0.91527 0.93975 0.92532 0.92020 0.91230 0.91907 0.90857 0.92678 0.91739 0.90464 0.92610 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.93 13.53 21.45 0.29 -57.64 16 2 C -0.02 -1.00 5.40 84.66 0.46 -0.54 16 3 Si 1.12 50.21 29.90 68.60 2.05 52.26 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.66 -37.64 8.76 25.60 0.22 -37.42 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.21 11.29 2.67 29.85 0.08 11.37 16 10 H 0.02 1.24 8.01 -2.39 -0.02 1.22 16 11 O -0.59 -30.25 11.53 -148.98 -1.72 -31.97 16 12 C 0.07 2.84 5.04 86.30 0.44 3.27 16 13 N -0.69 -25.54 6.27 -501.28 -3.14 -28.68 16 14 C 0.09 2.70 2.02 43.06 0.09 2.78 16 15 C -0.10 -2.76 5.16 30.22 0.16 -2.61 16 16 C -0.12 -2.52 5.32 30.16 0.16 -2.36 16 17 C -0.11 -1.92 5.85 31.32 0.18 -1.74 16 18 C -0.12 -2.01 5.31 30.14 0.16 -1.85 16 19 C -0.11 -1.95 5.61 30.19 0.17 -1.79 16 20 C -0.12 -2.83 4.49 28.73 0.13 -2.70 16 21 H 0.27 17.41 6.47 -92.71 -0.60 16.81 16 22 H 0.36 16.43 9.04 -74.06 -0.67 15.76 16 23 H 0.06 2.61 7.21 -2.38 -0.02 2.59 16 24 H 0.02 0.83 8.04 -2.39 -0.02 0.81 16 25 H 0.34 12.49 7.71 -89.69 -0.69 11.80 16 26 H 0.03 0.85 7.08 -2.39 -0.02 0.83 16 27 H 0.07 1.80 6.97 -2.39 -0.02 1.78 16 28 H 0.04 1.36 7.11 -2.39 -0.02 1.34 16 29 H 0.06 1.24 6.63 -2.39 -0.02 1.22 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.03 6.62 -2.39 -0.02 1.02 16 35 H 0.06 1.20 6.98 -2.38 -0.02 1.18 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.33 7.93 -2.38 -0.02 1.31 16 38 H 0.06 1.62 7.46 -2.39 -0.02 1.60 16 Total: -1.00 -64.88 289.89 -0.43 -65.31 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.15 Total: 34.29 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 2.24 Total: -33.58 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.85 Total: -86.32 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.72 Total: -31.97 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -64.88 -0.43 -65.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219557498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.809 kcal (2) G-P(sol) polarization free energy of solvation -64.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds