Wall clock time and date at job start Mon Mar 30 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48503 * 109.46932 * 239.99949 * 3 2 1 5 5 H 1.48498 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47224 * 119.99827 * 3 2 1 7 7 C 1.37871 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47012 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00368 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47358 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46968 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.47903 * 55.00262 * 14 13 12 16 16 C 1.53092 * 109.47697 * 175.02588 * 14 13 12 17 17 C 1.53207 * 109.14859 * 177.59587 * 16 14 13 18 18 C 1.53178 * 109.03992 * 303.02293 * 17 16 14 19 19 C 1.53097 * 109.16320 * 56.98185 * 18 17 16 20 20 O 1.42898 * 109.41490 * 302.39102 * 19 18 17 21 21 H 0.97000 * 120.00327 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46976 * 60.00517 * 9 7 2 23 23 H 1.08994 * 109.47269 * 300.00306 * 9 7 2 24 24 H 1.09002 * 109.47364 * 60.00444 * 10 9 7 25 25 H 1.08999 * 109.47780 * 300.00063 * 10 9 7 26 26 H 1.00895 * 111.00223 * 56.04910 * 11 10 9 27 27 H 1.09001 * 109.46928 * 59.99742 * 12 11 10 28 28 H 1.08998 * 109.46913 * 299.99923 * 12 11 10 29 29 H 1.09001 * 109.47101 * 60.00106 * 13 12 11 30 30 H 1.08998 * 109.47256 * 299.99971 * 13 12 11 31 31 H 1.08999 * 109.52366 * 297.50656 * 16 14 13 32 32 H 1.08992 * 109.52532 * 57.70335 * 16 14 13 33 33 H 1.09004 * 109.54239 * 183.15817 * 17 16 14 34 34 H 1.09000 * 109.61720 * 62.93376 * 17 16 14 35 35 H 1.09003 * 109.52669 * 297.07816 * 18 17 16 36 36 H 1.09005 * 109.57705 * 176.91879 * 18 17 16 37 37 H 1.08995 * 109.47859 * 182.40411 * 19 18 17 38 38 H 1.09000 * 109.48591 * 62.37596 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5109 -4.9342 0.0033 12 6 2.4354 -6.0759 0.0049 13 6 1.6354 -7.3800 0.0060 14 6 2.5983 -8.5690 0.0071 15 1 3.2851 -8.4798 0.8488 16 6 1.8022 -9.8705 0.1333 17 6 2.7680 -11.0583 0.0732 18 6 3.5651 -10.9885 -1.2330 19 6 4.2929 -9.6436 -1.3065 20 8 3.3404 -8.5824 -1.2141 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 2.8720 -3.6035 0.8927 25 1 2.8721 -3.6051 -0.8872 26 1 0.8748 -4.9849 -0.7783 27 1 3.0628 -6.0341 0.8953 28 1 3.0640 -6.0356 -0.8847 29 1 1.0077 -7.4220 -0.8842 30 1 1.0071 -7.4201 0.8958 31 1 1.2701 -9.8813 1.0846 32 1 1.0869 -9.9410 -0.6860 33 1 2.2029 -11.9898 0.1061 34 1 3.4523 -11.0168 0.9205 35 1 2.8853 -11.0815 -2.0801 36 1 4.2936 -11.7989 -1.2601 37 1 4.8275 -9.5709 -2.2535 38 1 5.0019 -9.5684 -0.4820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223972024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:09 Heat of formation + Delta-G solvation = -79.183588 kcal Electronic energy + Delta-G solvation = -15506.545197 eV Core-core repulsion = 12961.542332 eV Total energy + Delta-G solvation = -2545.002865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59214 -36.19610 -33.80519 -33.53623 -32.36505 -29.92025 -27.73950 -25.00354 -23.99732 -22.71617 -21.20284 -20.40017 -20.28764 -16.60344 -16.33209 -16.09031 -15.22725 -14.85000 -14.76142 -14.43542 -13.98640 -13.72867 -13.11837 -12.91218 -12.83573 -12.34370 -11.91685 -11.64274 -11.45659 -11.26328 -11.08951 -10.88686 -10.84955 -10.71562 -10.54570 -10.35570 -9.90199 -9.56751 -9.27468 -9.10154 -8.30614 -7.71568 -5.95383 -3.97847 3.36640 3.40520 3.43248 3.67734 4.39523 4.50864 4.56401 4.63664 4.73541 4.93268 5.00609 5.21922 5.27886 5.36056 5.40261 5.49363 5.53876 5.60834 5.61409 5.75685 5.78011 5.84624 5.98939 6.05865 6.27324 6.34406 6.43521 6.53334 7.04980 7.16256 7.56211 7.79424 7.89219 8.04452 8.14750 8.49085 9.09355 9.65560 11.16119 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.072859 B = 0.003635 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.210504 B = 7702.027314 C = 7946.152439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.695 5.695 12 C 0.061 3.939 13 C -0.109 4.109 14 C 0.091 3.909 15 H 0.057 0.943 16 C -0.150 4.150 17 C -0.123 4.123 18 C -0.157 4.157 19 C 0.060 3.940 20 O -0.376 6.376 21 H 0.261 0.739 22 H 0.014 0.986 23 H 0.025 0.975 24 H 0.057 0.943 25 H 0.015 0.985 26 H 0.335 0.665 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 -22.075 -0.835 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.325 5.325 12 C -0.069 4.069 13 C -0.147 4.147 14 C 0.033 3.967 15 H 0.075 0.925 16 C -0.188 4.188 17 C -0.160 4.160 18 C -0.194 4.194 19 C -0.017 4.017 20 O -0.295 6.295 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.152 0.848 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.662 -21.813 -0.289 22.538 hybrid contribution 0.862 0.682 -0.722 1.315 sum 6.524 -21.131 -1.011 22.138 Atomic orbital electron populations 1.69968 1.06028 1.26660 1.50695 1.25006 0.94851 0.99199 0.95340 0.86639 0.79551 0.83100 0.78587 1.20294 1.21280 1.20228 1.21164 0.92973 0.91089 1.50841 0.92815 1.19068 0.94044 0.90447 0.97680 1.22141 0.96949 0.88569 0.98571 1.60601 1.20014 1.02270 1.49639 1.21859 0.94691 0.90041 1.00312 1.21612 0.97335 0.92477 1.03230 1.22143 0.92995 0.94596 0.86932 0.92459 1.22215 0.98720 0.94856 1.02997 1.21595 0.98380 0.98522 0.97544 1.22198 1.00241 0.98312 0.98693 1.22531 0.90831 0.86419 1.01920 1.87988 1.53100 1.49661 1.38732 0.92961 0.96807 0.95682 0.92489 0.96711 0.84785 0.91882 0.95122 0.91327 0.89766 0.90756 0.90993 0.91624 0.91909 0.91110 0.91155 0.89086 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.47 5.62 -3.83 -0.02 1.45 16 11 N -0.69 -13.20 6.50 -113.78 -0.74 -13.94 16 12 C 0.06 0.96 5.58 -3.82 -0.02 0.94 16 13 C -0.11 -1.39 5.18 -26.73 -0.14 -1.53 16 14 C 0.09 1.03 2.64 -26.68 -0.07 0.96 16 15 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 16 C -0.15 -1.38 5.42 -26.58 -0.14 -1.53 16 17 C -0.12 -0.96 6.03 -26.53 -0.16 -1.12 16 18 C -0.16 -1.23 6.14 -26.59 -0.16 -1.39 16 19 C 0.06 0.56 6.84 37.21 0.25 0.82 16 20 O -0.38 -4.72 9.94 -35.23 -0.35 -5.07 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.34 6.16 8.73 -39.29 -0.34 5.82 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.51 7.82 -51.93 -0.41 0.10 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -31.20 306.73 -8.83 -40.03 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.06 Total: -1.06 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.02 Total: -14.88 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.00 Total: -40.72 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.35 Total: -5.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.20 -8.83 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223972024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.153 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds