Wall clock time and date at job start Mon Mar 30 2020 03:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48503 * 109.46932 * 239.99949 * 3 2 1 5 5 H 1.48498 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47224 * 119.99827 * 3 2 1 7 7 C 1.37871 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47012 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00368 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47358 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46968 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.47903 * 55.00262 * 14 13 12 16 16 C 1.53092 * 109.47697 * 175.02588 * 14 13 12 17 17 C 1.53207 * 109.14859 * 177.59587 * 16 14 13 18 18 C 1.53178 * 109.03992 * 303.02293 * 17 16 14 19 19 C 1.53097 * 109.16320 * 56.98185 * 18 17 16 20 20 O 1.42898 * 109.41490 * 302.39102 * 19 18 17 21 21 H 0.97000 * 120.00327 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46976 * 60.00517 * 9 7 2 23 23 H 1.08994 * 109.47269 * 300.00306 * 9 7 2 24 24 H 1.09002 * 109.47364 * 60.00444 * 10 9 7 25 25 H 1.08999 * 109.47780 * 300.00063 * 10 9 7 26 26 H 1.00895 * 111.00223 * 56.04910 * 11 10 9 27 27 H 1.09001 * 109.46928 * 59.99742 * 12 11 10 28 28 H 1.08998 * 109.46913 * 299.99923 * 12 11 10 29 29 H 1.09001 * 109.47101 * 60.00106 * 13 12 11 30 30 H 1.08998 * 109.47256 * 299.99971 * 13 12 11 31 31 H 1.08999 * 109.52366 * 297.50656 * 16 14 13 32 32 H 1.08992 * 109.52532 * 57.70335 * 16 14 13 33 33 H 1.09004 * 109.54239 * 183.15817 * 17 16 14 34 34 H 1.09000 * 109.61720 * 62.93376 * 17 16 14 35 35 H 1.09003 * 109.52669 * 297.07816 * 18 17 16 36 36 H 1.09005 * 109.57705 * 176.91879 * 18 17 16 37 37 H 1.08995 * 109.47859 * 182.40411 * 19 18 17 38 38 H 1.09000 * 109.48591 * 62.37596 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5109 -4.9342 0.0033 12 6 2.4354 -6.0759 0.0049 13 6 1.6354 -7.3800 0.0060 14 6 2.5983 -8.5690 0.0071 15 1 3.2851 -8.4798 0.8488 16 6 1.8022 -9.8705 0.1333 17 6 2.7680 -11.0583 0.0732 18 6 3.5651 -10.9885 -1.2330 19 6 4.2929 -9.6436 -1.3065 20 8 3.3404 -8.5824 -1.2141 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 2.8720 -3.6035 0.8927 25 1 2.8721 -3.6051 -0.8872 26 1 0.8748 -4.9849 -0.7783 27 1 3.0628 -6.0341 0.8953 28 1 3.0640 -6.0356 -0.8847 29 1 1.0077 -7.4220 -0.8842 30 1 1.0071 -7.4201 0.8958 31 1 1.2701 -9.8813 1.0846 32 1 1.0869 -9.9410 -0.6860 33 1 2.2029 -11.9898 0.1061 34 1 3.4523 -11.0168 0.9205 35 1 2.8853 -11.0815 -2.0801 36 1 4.2936 -11.7989 -1.2601 37 1 4.8275 -9.5709 -2.2535 38 1 5.0019 -9.5684 -0.4820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223972024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:08 Heat of formation + Delta-G solvation = -99.645779 kcal Electronic energy + Delta-G solvation = -15507.432504 eV Core-core repulsion = 12961.542332 eV Total energy + Delta-G solvation = -2545.890172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40598 -37.73458 -35.34633 -34.52483 -33.87009 -31.49183 -29.12574 -26.40407 -25.24469 -23.87271 -22.63511 -21.94739 -21.10079 -18.51133 -17.53606 -16.96558 -16.73406 -16.43696 -15.72845 -15.57537 -15.07909 -15.01461 -14.65476 -14.23977 -14.11839 -13.56966 -13.19139 -13.02168 -12.95070 -12.67290 -12.41873 -12.30603 -12.04189 -11.94505 -11.74371 -11.61622 -11.41316 -11.30406 -11.06979 -10.56337 -10.31877 -9.30610 -8.20512 -6.32614 1.40269 1.44106 1.52092 2.40742 2.87376 3.12470 3.28353 3.84320 3.91902 3.96916 4.03639 4.18244 4.34133 4.38397 4.41531 4.57010 4.57750 4.60936 4.72031 4.80219 4.88359 4.94465 5.02110 5.05876 5.11738 5.14458 5.19093 5.29005 5.41582 5.43534 5.66241 5.77629 6.12781 6.26601 6.35978 6.53147 6.84129 7.36606 8.91618 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.072859 B = 0.003635 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.210504 B = 7702.027314 C = 7946.152439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.698 5.698 12 C 0.065 3.935 13 C -0.101 4.101 14 C 0.092 3.908 15 H 0.061 0.939 16 C -0.147 4.147 17 C -0.122 4.122 18 C -0.153 4.153 19 C 0.052 3.948 20 O -0.403 6.403 21 H 0.265 0.735 22 H -0.009 1.009 23 H -0.004 1.004 24 H 0.058 0.942 25 H 0.015 0.985 26 H 0.338 0.662 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 -22.841 -0.609 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.329 5.329 12 C -0.064 4.064 13 C -0.139 4.139 14 C 0.034 3.966 15 H 0.079 0.921 16 C -0.185 4.185 17 C -0.160 4.160 18 C -0.191 4.191 19 C -0.025 4.025 20 O -0.323 6.323 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.014 0.986 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.155 0.845 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.878 -22.608 -0.064 23.631 hybrid contribution 0.470 0.876 -0.805 1.279 sum 7.348 -21.732 -0.869 22.957 Atomic orbital electron populations 1.70105 1.07852 1.27956 1.51256 1.26007 0.95818 1.03464 0.94501 0.85440 0.78229 0.77773 0.79226 1.19146 1.20636 1.19063 1.21599 0.93556 0.92316 1.51240 0.92182 1.18922 0.94282 0.92247 0.95110 1.21785 0.95656 0.88605 0.98573 1.60542 1.20461 1.01950 1.49909 1.21899 0.94456 0.90074 0.99997 1.21545 0.97398 0.91604 1.03371 1.22123 0.92903 0.94780 0.86769 0.92120 1.22184 0.98721 0.94320 1.03295 1.21618 0.98300 0.98339 0.97716 1.22176 1.00452 0.97957 0.98505 1.22740 0.90628 0.86471 1.02617 1.87942 1.53934 1.51193 1.39260 0.92653 0.99043 0.98571 0.92388 0.96685 0.84476 0.91626 0.95880 0.91700 0.89102 0.89747 0.91602 0.90310 0.91284 0.91731 0.89229 0.88408 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.40 9.11 25.60 0.23 -32.17 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.77 5.23 29.85 0.16 1.93 16 10 C 0.08 3.73 5.62 86.30 0.49 4.21 16 11 N -0.70 -26.58 6.50 -513.89 -3.34 -29.92 16 12 C 0.06 2.01 5.58 86.30 0.48 2.49 16 13 C -0.10 -2.51 5.18 30.59 0.16 -2.36 16 14 C 0.09 1.96 2.64 30.62 0.08 2.04 16 15 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 16 C -0.15 -2.46 5.42 30.69 0.17 -2.29 16 17 C -0.12 -1.63 6.03 30.72 0.19 -1.45 16 18 C -0.15 -2.09 6.14 30.69 0.19 -1.90 16 19 C 0.05 0.89 6.84 72.01 0.49 1.38 16 20 O -0.40 -9.76 9.94 -148.98 -1.48 -11.24 16 21 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 22 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.34 12.55 8.73 -89.70 -0.78 11.77 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.02 0.76 7.82 -2.39 -0.02 0.74 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.53 306.73 0.79 -65.73 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.21 Total: 13.74 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.09 Total: -27.63 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -3.06 Total: -87.71 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.48 Total: -11.24 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.53 0.79 -65.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223972024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.913 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds