Wall clock time and date at job start Mon Mar 30 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48500 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47148 * 299.99582 * 3 2 1 6 6 H 1.48500 * 109.47212 * 59.99757 * 3 2 1 7 7 C 1.37871 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47071 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00029 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.43481 * 54.29291 * 14 13 12 16 16 C 1.54891 * 110.48794 * 291.75818 * 14 13 12 17 17 C 1.54885 * 102.75217 * 203.37860 * 16 14 13 18 18 C 1.54272 * 104.19432 * 37.93954 * 17 16 14 19 19 H 1.08999 * 110.03030 * 95.67615 * 18 17 16 20 20 O 1.42902 * 110.03180 * 217.05684 * 18 17 16 21 21 C 1.54081 * 106.62202 * 336.27906 * 18 17 16 22 22 H 0.97005 * 119.99618 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47339 * 60.00089 * 9 7 2 24 24 H 1.09003 * 109.46887 * 299.99757 * 9 7 2 25 25 H 1.09005 * 109.47127 * 59.99583 * 10 9 7 26 26 H 1.09004 * 109.47149 * 300.00087 * 10 9 7 27 27 H 1.08995 * 109.47319 * 59.99998 * 11 10 9 28 28 H 1.09003 * 109.47435 * 299.99322 * 11 10 9 29 29 H 1.00908 * 110.99583 * 303.94989 * 12 11 10 30 30 H 1.09002 * 109.47043 * 299.99792 * 13 12 11 31 31 H 1.09001 * 109.47354 * 59.99854 * 13 12 11 32 32 H 1.09000 * 110.75625 * 321.69278 * 16 14 13 33 33 H 1.09007 * 110.75598 * 85.06063 * 16 14 13 34 34 H 1.08997 * 110.48962 * 156.61729 * 17 16 14 35 35 H 1.09005 * 110.48602 * 279.13552 * 17 16 14 36 36 H 0.96697 * 114.00439 * 298.55173 * 20 18 17 37 37 H 1.08998 * 110.16610 * 240.87818 * 21 18 17 38 38 H 1.09003 * 110.00484 * 119.37925 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 7 2.4348 -6.1036 0.0043 13 6 1.7345 -7.3950 0.0044 14 6 2.7594 -8.5309 0.0057 15 1 3.4563 -8.4138 0.8356 16 6 3.5229 -8.5738 -1.3413 17 6 4.0144 -10.0410 -1.4091 18 6 2.8475 -10.8586 -0.8177 19 1 2.2115 -11.2349 -1.6189 20 8 3.3553 -11.9475 -0.0440 21 6 2.0497 -9.8984 0.0855 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5566 0.8903 25 1 2.8713 -3.6039 0.8923 26 1 2.8726 -3.6047 -0.8877 27 1 0.8539 -5.0454 -0.8877 28 1 0.8532 -5.0442 0.8923 29 1 3.0703 -6.0373 -0.7767 30 1 1.1086 -7.4688 0.8937 31 1 1.1106 -7.4700 -0.8863 32 1 2.8532 -8.3520 -2.1722 33 1 4.3668 -7.8839 -1.3291 34 1 4.2001 -10.3338 -2.4425 35 1 4.9154 -10.1697 -0.8093 36 1 3.8855 -12.5771 -0.5515 37 1 2.0517 -10.2607 1.1135 38 1 1.0258 -9.8093 -0.2775 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227684804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:27 Heat of formation + Delta-G solvation = -87.045129 kcal Electronic energy + Delta-G solvation = -15336.480403 eV Core-core repulsion = 12791.136636 eV Total energy + Delta-G solvation = -2545.343767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21735 -36.68274 -35.07064 -33.29492 -31.32606 -29.34152 -28.15392 -25.94720 -23.64358 -22.16550 -20.78782 -20.33044 -19.66124 -17.83747 -16.30580 -15.81428 -15.65795 -14.74790 -14.46321 -14.24847 -13.97836 -13.73933 -13.25013 -12.87960 -12.47963 -12.12582 -11.86547 -11.57044 -11.36248 -11.15345 -10.89986 -10.86698 -10.73862 -10.65775 -10.54500 -10.40422 -10.12200 -9.66484 -9.30292 -9.01187 -8.32331 -8.13098 -5.97310 -3.99227 3.32972 3.40204 3.44952 3.92012 4.28368 4.36101 4.47640 4.55624 4.77702 4.99786 5.21515 5.24964 5.36479 5.38545 5.40941 5.52323 5.64431 5.70706 5.78273 5.82380 5.88740 5.94792 5.96696 6.12035 6.30518 6.35698 6.75277 6.80597 7.17017 7.36978 7.39532 7.67352 7.71972 7.86918 8.03525 8.46948 9.08339 9.64719 11.14229 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.081391 B = 0.003431 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.936136 B = 8159.109552 C = 8353.653255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.691 5.691 13 C 0.065 3.935 14 C -0.088 4.088 15 H 0.086 0.914 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.099 3.901 19 H 0.056 0.944 20 O -0.568 6.568 21 C -0.115 4.115 22 H 0.259 0.741 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.336 0.664 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.375 0.625 37 H 0.078 0.922 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 -21.380 -3.351 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.322 5.322 13 C -0.065 4.065 14 C -0.107 4.107 15 H 0.104 0.896 16 C -0.159 4.159 17 C -0.195 4.195 18 C 0.040 3.960 19 H 0.074 0.926 20 O -0.373 6.373 21 C -0.153 4.153 22 H 0.069 0.931 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.222 0.778 37 H 0.097 0.903 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.163 -20.934 -2.184 21.672 hybrid contribution 0.316 0.659 -1.453 1.627 sum 5.479 -20.275 -3.637 21.315 Atomic orbital electron populations 1.69985 1.06065 1.26418 1.51195 1.25039 0.94857 0.99289 0.95425 0.86536 0.80149 0.83793 0.77533 1.19714 1.21068 1.21019 1.21306 0.93106 0.91065 1.50110 0.92610 1.19075 0.94038 0.91414 0.97104 1.21625 0.99169 0.93026 1.00686 1.22130 0.94149 0.90878 0.99854 1.60563 1.20403 1.01448 1.49786 1.21984 0.95160 0.89001 1.00342 1.22009 0.97342 0.93074 0.98295 0.89602 1.22524 1.00180 0.95790 0.97414 1.23103 0.99014 0.96456 1.00935 1.22556 0.93982 0.86720 0.92737 0.92580 1.86565 1.72393 1.38241 1.40134 1.22195 0.98557 0.93607 1.00900 0.93113 0.96829 0.96572 0.92555 0.93718 0.95864 0.91513 0.84638 0.91132 0.95545 0.91471 0.90813 0.91617 0.90540 0.77847 0.90348 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 11 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 12 N -0.69 -10.34 6.50 -113.78 -0.74 -11.08 16 13 C 0.06 0.80 5.03 -3.83 -0.02 0.79 16 14 C -0.09 -0.94 3.10 -88.96 -0.28 -1.21 16 15 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.12 -1.14 5.62 -24.74 -0.14 -1.28 16 17 C -0.16 -1.27 6.55 -25.07 -0.16 -1.43 16 18 C 0.10 0.85 4.27 -25.50 -0.11 0.75 16 19 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 20 O -0.57 -5.15 13.23 -35.23 -0.47 -5.62 16 21 C -0.11 -1.12 6.20 -25.50 -0.16 -1.27 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.34 4.70 7.92 -39.29 -0.31 4.38 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.32 8.06 -51.93 -0.42 -0.10 16 32 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 33 H 0.07 0.70 8.02 -51.92 -0.42 0.29 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.37 1.77 9.10 45.56 0.41 2.19 16 37 H 0.08 0.83 7.96 -51.93 -0.41 0.41 16 38 H 0.07 0.66 7.84 -51.93 -0.41 0.26 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -31.56 307.71 -8.59 -40.15 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.15 Total: 0.09 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.58 Total: -18.46 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.00 Total: -37.76 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.47 Total: -5.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.56 -8.59 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227684804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.899 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds