Wall clock time and date at job start Mon Mar 30 2020 03:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46736 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46935 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99983 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47125 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.43604 * 56.08346 * 14 13 12 16 16 C 1.54267 * 110.48965 * 293.54298 * 14 13 12 17 17 C 1.53870 * 106.60273 * 217.71600 * 16 14 13 18 18 C 1.54262 * 106.59645 * 359.97438 * 17 16 14 19 19 H 1.09001 * 110.49355 * 264.93471 * 18 17 16 20 20 O 1.42909 * 110.48339 * 142.29337 * 18 17 16 21 21 C 1.54888 * 104.19642 * 23.61746 * 18 17 16 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 26 26 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 27 27 H 1.09007 * 109.47383 * 299.99697 * 11 10 9 28 28 H 1.09001 * 109.47155 * 60.00044 * 11 10 9 29 29 H 1.00897 * 110.99723 * 303.95020 * 12 11 10 30 30 H 1.09002 * 109.46999 * 299.99580 * 13 12 11 31 31 H 1.09000 * 109.47564 * 59.99446 * 13 12 11 32 32 H 1.09006 * 110.02774 * 336.99981 * 16 14 13 33 33 H 1.08999 * 110.03350 * 98.37274 * 16 14 13 34 34 H 1.08990 * 110.03896 * 119.28396 * 17 16 14 35 35 H 1.09011 * 110.02787 * 240.71379 * 17 16 14 36 36 H 0.96692 * 113.99798 * 61.45570 * 20 18 17 37 37 H 1.09001 * 110.75348 * 203.74462 * 21 18 17 38 38 H 1.08994 * 110.76033 * 80.36768 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 6 1.4803 -4.9871 -0.0116 12 7 2.4349 -6.1036 -0.0183 13 6 1.7346 -7.3950 -0.0185 14 6 2.7595 -8.5309 -0.0262 15 1 3.4414 -8.4339 0.8187 16 6 3.5439 -8.5416 -1.3545 17 6 3.7643 -10.0192 -1.7230 18 6 3.1068 -10.8549 -0.6054 19 1 3.8451 -11.1355 0.1458 20 8 2.4813 -12.0175 -1.1525 21 6 2.0463 -9.9053 0.0050 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 2.8685 -3.6024 -0.9044 26 1 2.8753 -3.6063 0.8755 27 1 0.8573 -5.0466 0.8809 28 1 0.8501 -5.0431 -0.8992 29 1 3.0662 -6.0348 -0.8023 30 1 1.1135 -7.4716 0.8739 31 1 1.1060 -7.4673 -0.9061 32 1 2.9655 -8.0448 -2.1336 33 1 4.5034 -8.0409 -1.2256 34 1 3.2931 -10.2396 -2.6808 35 1 4.8314 -10.2364 -1.7727 36 1 3.0923 -12.6195 -1.5990 37 1 1.8117 -10.1956 1.0291 38 1 1.1456 -9.8867 -0.6084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227684814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:30 Heat of formation + Delta-G solvation = -90.831270 kcal Electronic energy + Delta-G solvation = -15362.340837 eV Core-core repulsion = 12816.832891 eV Total energy + Delta-G solvation = -2545.507946 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.25373 -36.77352 -35.22225 -33.58817 -31.30466 -29.32097 -28.13391 -25.63034 -23.58545 -22.24242 -20.88446 -20.48714 -19.92557 -17.39379 -16.68905 -16.43267 -15.76229 -14.83805 -14.38474 -13.93662 -13.83745 -13.69535 -13.43748 -12.92902 -12.64076 -12.41757 -11.92990 -11.60385 -11.47404 -11.28141 -10.94892 -10.83590 -10.69815 -10.61617 -10.49558 -10.22067 -10.10386 -9.81070 -9.68769 -8.49933 -8.29296 -8.21867 -6.32704 -4.01169 3.46005 3.48409 3.67052 3.79336 4.29481 4.34306 4.45276 4.59119 4.71376 5.05019 5.06677 5.16384 5.31845 5.38198 5.44552 5.45963 5.57617 5.66582 5.74182 5.76183 5.80085 5.86497 5.92795 6.05383 6.22180 6.24391 6.60728 6.65304 7.00201 7.26976 7.33248 7.46386 7.55357 7.62728 8.27015 8.50630 8.92692 9.71215 11.08057 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.080898 B = 0.003440 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.032815 B = 8136.706062 C = 8324.871713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.600 4.600 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.100 4.100 11 C 0.058 3.942 12 N -0.691 5.691 13 C 0.066 3.934 14 C -0.089 4.089 15 H 0.086 0.914 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.097 3.903 19 H 0.062 0.938 20 O -0.567 6.567 21 C -0.111 4.111 22 H 0.268 0.732 23 H 0.007 0.993 24 H 0.004 0.996 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.337 0.663 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.376 0.624 37 H 0.072 0.928 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -21.556 -2.313 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.639 4.639 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.322 5.322 13 C -0.064 4.064 14 C -0.108 4.108 15 H 0.104 0.896 16 C -0.158 4.158 17 C -0.195 4.195 18 C 0.038 3.962 19 H 0.080 0.920 20 O -0.372 6.372 21 C -0.149 4.149 22 H 0.078 0.922 23 H 0.025 0.975 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.154 0.846 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.223 0.777 37 H 0.091 0.909 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.343 -19.605 -1.376 20.651 hybrid contribution 0.418 -1.973 -1.206 2.349 sum 6.761 -21.578 -2.581 22.759 Atomic orbital electron populations 1.70781 1.06892 1.30550 1.46921 1.25874 0.96579 1.02777 0.93852 0.83541 0.74869 0.75317 0.76504 1.20788 1.21426 1.21478 1.22070 0.94311 0.92067 1.55432 0.93327 1.19197 0.94670 0.93214 0.95815 1.21486 0.98895 0.92498 1.00921 1.22137 0.94174 0.90947 0.99827 1.60547 1.20604 1.01413 1.49598 1.21958 0.95099 0.88833 1.00508 1.21971 0.97187 0.93252 0.98348 0.89553 1.22142 1.00788 0.95602 0.97272 1.22872 1.00789 0.96254 0.99593 1.22732 0.94488 0.85018 0.93989 0.92000 1.86529 1.39242 1.34739 1.76682 1.22482 0.98209 0.93082 1.01105 0.92159 0.97485 0.97735 0.93533 0.92374 0.91532 0.95908 0.84558 0.91047 0.95441 0.91709 0.91185 0.90954 0.91663 0.77728 0.90898 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.76 13.65 55.43 0.76 -28.00 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.84 29.90 -169.99 -5.08 20.75 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -17.68 9.11 -34.44 -0.31 -18.00 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 10 C -0.10 -2.15 5.41 -26.73 -0.14 -2.29 16 11 C 0.06 1.03 5.68 -3.82 -0.02 1.01 16 12 N -0.69 -10.28 6.50 -113.78 -0.74 -11.02 16 13 C 0.07 0.81 5.06 -3.83 -0.02 0.79 16 14 C -0.09 -0.91 3.12 -88.97 -0.28 -1.18 16 15 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.12 -1.13 5.54 -25.61 -0.14 -1.27 16 17 C -0.16 -1.27 6.55 -25.62 -0.17 -1.44 16 18 C 0.10 0.83 4.24 -25.07 -0.11 0.72 16 19 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 20 O -0.57 -5.08 13.38 -35.23 -0.47 -5.55 16 21 C -0.11 -1.07 6.04 -24.75 -0.15 -1.22 16 22 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 23 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 24 H 0.00 0.12 8.00 -51.93 -0.42 -0.29 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.34 4.71 7.93 -39.29 -0.31 4.40 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.35 8.05 -51.93 -0.42 -0.07 16 32 H 0.06 0.65 7.77 -51.93 -0.40 0.25 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.38 1.73 9.11 45.56 0.41 2.14 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -32.40 306.63 -8.59 -40.99 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.11 Total: 0.71 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.56 Total: -22.50 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.02 Total: -39.02 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.47 Total: -5.55 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.40 -8.59 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227684814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.845 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds