Wall clock time and date at job start Mon Mar 30 2020 03:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46736 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46935 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99983 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47125 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.43604 * 56.08346 * 14 13 12 16 16 C 1.54267 * 110.48965 * 293.54298 * 14 13 12 17 17 C 1.53870 * 106.60273 * 217.71600 * 16 14 13 18 18 C 1.54262 * 106.59645 * 359.97438 * 17 16 14 19 19 H 1.09001 * 110.49355 * 264.93471 * 18 17 16 20 20 O 1.42909 * 110.48339 * 142.29337 * 18 17 16 21 21 C 1.54888 * 104.19642 * 23.61746 * 18 17 16 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 26 26 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 27 27 H 1.09007 * 109.47383 * 299.99697 * 11 10 9 28 28 H 1.09001 * 109.47155 * 60.00044 * 11 10 9 29 29 H 1.00897 * 110.99723 * 303.95020 * 12 11 10 30 30 H 1.09002 * 109.46999 * 299.99580 * 13 12 11 31 31 H 1.09000 * 109.47564 * 59.99446 * 13 12 11 32 32 H 1.09006 * 110.02774 * 336.99981 * 16 14 13 33 33 H 1.08999 * 110.03350 * 98.37274 * 16 14 13 34 34 H 1.08990 * 110.03896 * 119.28396 * 17 16 14 35 35 H 1.09011 * 110.02787 * 240.71379 * 17 16 14 36 36 H 0.96692 * 113.99798 * 61.45570 * 20 18 17 37 37 H 1.09001 * 110.75348 * 203.74462 * 21 18 17 38 38 H 1.08994 * 110.76033 * 80.36768 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 6 1.4803 -4.9871 -0.0116 12 7 2.4349 -6.1036 -0.0183 13 6 1.7346 -7.3950 -0.0185 14 6 2.7595 -8.5309 -0.0262 15 1 3.4414 -8.4339 0.8187 16 6 3.5439 -8.5416 -1.3545 17 6 3.7643 -10.0192 -1.7230 18 6 3.1068 -10.8549 -0.6054 19 1 3.8451 -11.1355 0.1458 20 8 2.4813 -12.0175 -1.1525 21 6 2.0463 -9.9053 0.0050 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 2.8685 -3.6024 -0.9044 26 1 2.8753 -3.6063 0.8755 27 1 0.8573 -5.0466 0.8809 28 1 0.8501 -5.0431 -0.8992 29 1 3.0662 -6.0348 -0.8023 30 1 1.1135 -7.4716 0.8739 31 1 1.1060 -7.4673 -0.9061 32 1 2.9655 -8.0448 -2.1336 33 1 4.5034 -8.0409 -1.2256 34 1 3.2931 -10.2396 -2.6808 35 1 4.8314 -10.2364 -1.7727 36 1 3.0923 -12.6195 -1.5990 37 1 1.8117 -10.1956 1.0291 38 1 1.1456 -9.8867 -0.6084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227684814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:30 Heat of formation + Delta-G solvation = -114.112851 kcal Electronic energy + Delta-G solvation = -15363.350402 eV Core-core repulsion = 12816.832891 eV Total energy + Delta-G solvation = -2546.517511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02122 -37.92836 -36.47054 -35.33759 -32.99351 -30.32114 -29.12940 -27.28878 -25.01442 -23.82482 -22.29583 -21.48156 -20.82726 -18.91868 -18.08407 -17.38945 -16.72700 -16.01872 -15.73933 -15.51631 -15.27338 -15.04187 -14.54808 -14.14264 -13.99695 -13.62720 -13.25504 -13.03537 -12.68577 -12.55423 -12.42180 -12.05133 -11.94907 -11.78731 -11.74066 -11.56789 -11.52523 -11.31183 -10.85512 -10.66727 -10.55642 -9.46270 -8.70972 -6.41389 1.52179 1.61208 1.80725 2.56500 2.98487 3.14231 3.46258 3.58954 3.60247 4.02686 4.06817 4.17380 4.31156 4.32368 4.45010 4.51736 4.54931 4.60561 4.69571 4.75182 4.83637 4.88653 4.92370 4.98768 5.03793 5.08909 5.17795 5.33556 5.39405 5.43469 5.50931 5.93305 6.04156 6.16874 6.41008 6.56318 6.89790 7.41221 8.70029 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.080898 B = 0.003440 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.032815 B = 8136.706062 C = 8324.871713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.042 4.042 3 Si 1.120 2.880 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.621 4.621 8 H 0.052 0.948 9 C 0.008 3.992 10 C -0.086 4.086 11 C 0.070 3.930 12 N -0.690 5.690 13 C 0.066 3.934 14 C -0.081 4.081 15 H 0.087 0.913 16 C -0.121 4.121 17 C -0.151 4.151 18 C 0.098 3.902 19 H 0.075 0.925 20 O -0.585 6.585 21 C -0.112 4.112 22 H 0.255 0.745 23 H -0.012 1.012 24 H -0.013 1.013 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.344 0.656 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.076 0.924 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.689 -22.289 -2.481 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.940 3.060 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.659 4.659 8 H 0.070 0.930 9 C -0.029 4.029 10 C -0.124 4.124 11 C -0.059 4.059 12 N -0.321 5.321 13 C -0.063 4.063 14 C -0.100 4.100 15 H 0.105 0.895 16 C -0.159 4.159 17 C -0.189 4.189 18 C 0.040 3.960 19 H 0.093 0.907 20 O -0.393 6.393 21 C -0.151 4.151 22 H 0.064 0.936 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.162 0.838 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.244 0.756 37 H 0.095 0.905 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.060 -20.390 -1.555 21.980 hybrid contribution -0.136 -1.815 -1.158 2.157 sum 7.924 -22.204 -2.713 23.731 Atomic orbital electron populations 1.70921 1.07993 1.29814 1.48906 1.27539 0.96631 1.07067 0.92632 0.82915 0.74110 0.70824 0.78137 1.20807 1.19298 1.19241 1.22529 0.94793 0.93497 1.55064 0.93016 1.19153 0.95145 0.94617 0.94007 1.21262 0.97773 0.92554 1.00843 1.21844 0.94070 0.90367 0.99608 1.60479 1.20087 1.01462 1.50056 1.22013 0.95683 0.88282 1.00324 1.21871 0.96615 0.92578 0.98929 0.89477 1.22147 1.00630 0.96689 0.96429 1.22826 1.01794 0.95018 0.99239 1.22715 0.94081 0.84877 0.94363 0.90664 1.86481 1.40571 1.35212 1.77051 1.22470 0.98141 0.93144 1.01306 0.93610 0.99357 0.99435 0.93081 0.92799 0.91981 0.96052 0.83782 0.91327 0.95540 0.92564 0.90775 0.91232 0.89994 0.75592 0.90535 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.85 13.65 21.45 0.29 -59.56 16 2 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 3 Si 1.12 51.12 29.90 68.60 2.05 53.18 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.62 -36.72 9.11 25.60 0.23 -36.48 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.01 0.45 4.28 29.85 0.13 0.58 16 10 C -0.09 -3.69 5.41 30.59 0.17 -3.52 16 11 C 0.07 2.48 5.68 86.30 0.49 2.97 16 12 N -0.69 -19.74 6.50 -513.88 -3.34 -23.08 16 13 C 0.07 1.58 5.06 86.30 0.44 2.01 16 14 C -0.08 -1.54 3.12 -9.73 -0.03 -1.57 16 15 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 16 C -0.12 -2.07 5.54 31.32 0.17 -1.90 16 17 C -0.15 -2.11 6.55 31.32 0.21 -1.90 16 18 C 0.10 1.48 4.24 31.67 0.13 1.61 16 19 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 20 O -0.58 -9.37 13.38 -148.98 -1.99 -11.36 16 21 C -0.11 -2.01 6.04 31.88 0.19 -1.82 16 22 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 23 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 24 H -0.01 -0.72 8.00 -2.39 -0.02 -0.74 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.34 9.11 7.93 -89.70 -0.71 8.40 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 0.65 8.05 -2.39 -0.02 0.63 16 32 H 0.06 1.06 7.77 -2.38 -0.02 1.04 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.39 2.77 9.11 -74.06 -0.67 2.10 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 Total: -1.00 -68.81 306.63 -0.67 -69.48 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.27 Total: 13.39 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 2.59 Total: -42.04 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.05 Total: -82.64 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.99 Total: -11.36 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.18 kcal Total: -68.81 -0.67 -69.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227684814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.636 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds