Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47092 * 270.00348 * 3 2 1 5 5 H 1.48504 * 109.47272 * 29.99892 * 3 2 1 6 6 H 1.48498 * 109.47459 * 150.00309 * 3 2 1 7 7 C 1.37874 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47157 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47279 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00241 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.01664 * 34.94013 * 13 12 11 15 15 C 1.53877 * 110.03166 * 273.54623 * 13 12 11 16 16 C 1.54265 * 106.59605 * 240.66545 * 15 13 12 17 17 C 1.54887 * 104.20056 * 336.39127 * 16 15 13 18 18 C 1.54463 * 110.16261 * 156.19733 * 13 12 11 19 19 H 1.09003 * 110.40626 * 24.16025 * 18 13 12 20 20 C 1.53008 * 110.65944 * 261.46040 * 18 13 12 21 21 O 1.42900 * 109.47050 * 178.78530 * 20 18 13 22 22 H 0.97002 * 120.00206 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47473 * 60.00223 * 9 7 2 24 24 H 1.08999 * 109.47152 * 300.00029 * 9 7 2 25 25 H 1.09004 * 109.46989 * 59.99630 * 10 9 7 26 26 H 1.08999 * 109.46871 * 299.99905 * 10 9 7 27 27 H 1.09004 * 109.47455 * 59.99938 * 11 10 9 28 28 H 1.08999 * 109.47170 * 299.99744 * 11 10 9 29 29 H 1.00900 * 111.00136 * 303.96006 * 12 11 10 30 30 H 1.08995 * 110.02951 * 121.38500 * 15 13 12 31 31 H 1.08998 * 110.07557 * 359.97002 * 15 13 12 32 32 H 1.09004 * 110.48891 * 217.71100 * 16 15 13 33 33 H 1.09006 * 110.48556 * 95.06998 * 16 15 13 34 34 H 1.09002 * 110.75856 * 156.25785 * 17 16 15 35 35 H 1.09006 * 110.75640 * 279.44771 * 17 16 15 36 36 H 1.09001 * 109.46977 * 298.78378 * 20 18 13 37 37 H 1.08997 * 109.47352 * 58.78497 * 20 18 13 38 38 H 0.96701 * 113.99778 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 0.0001 12 7 2.4350 -6.1036 -0.0005 13 6 1.7347 -7.3949 0.0007 14 1 0.8182 -7.3229 -0.5849 15 6 1.4064 -7.8151 1.4441 16 6 2.1321 -9.1542 1.6891 17 6 2.3264 -9.7461 0.2710 18 6 2.6465 -8.4956 -0.5851 19 1 3.6950 -8.2177 -0.4774 20 6 2.3074 -8.7518 -2.0550 21 8 3.1831 -9.7524 -2.5784 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5570 0.8897 25 1 2.8721 -3.6042 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.8534 -5.0451 -0.8896 28 1 0.8541 -5.0445 0.8903 29 1 3.0694 -6.0366 -0.7823 30 1 0.3306 -7.9471 1.5590 31 1 1.7668 -7.0616 2.1443 32 1 1.5161 -9.8163 2.2977 33 1 3.0970 -8.9834 2.1666 34 1 3.1601 -10.4481 0.2563 35 1 1.4117 -10.2274 -0.0753 36 1 1.2756 -9.0938 -2.1355 37 1 2.4297 -7.8291 -2.6222 38 1 3.0249 -9.9662 -3.5081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231305620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = -83.446957 kcal Electronic energy + Delta-G solvation = -15680.142588 eV Core-core repulsion = 13134.954849 eV Total energy + Delta-G solvation = -2545.187738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.14003 -36.59406 -35.15768 -33.10777 -30.98178 -30.13734 -27.49949 -25.65739 -24.01713 -22.38703 -20.64808 -20.00086 -19.54694 -17.45891 -16.26156 -16.19360 -15.30373 -15.06598 -14.56633 -14.40296 -14.02562 -13.49901 -13.42162 -12.50183 -12.31801 -12.20818 -11.56629 -11.27535 -11.22787 -11.04113 -10.98256 -10.82477 -10.68439 -10.53338 -10.48417 -10.42757 -10.12268 -9.67359 -9.30545 -9.02902 -8.32550 -8.15330 -5.97716 -3.99723 3.33585 3.39647 3.43731 3.91668 4.36731 4.49256 4.53986 4.73251 4.83399 5.15463 5.21688 5.35475 5.38117 5.39969 5.48741 5.59405 5.71815 5.78520 5.87260 5.92217 5.96745 6.04563 6.14311 6.31036 6.32841 6.37895 6.74508 6.82241 7.16154 7.39647 7.41193 7.66323 7.70954 7.85956 8.02865 8.46338 9.07567 9.64237 11.13776 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044848 B = 0.004225 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.174348 B = 6625.519657 C = 6929.279085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.685 5.685 13 C 0.089 3.911 14 H 0.044 0.956 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.096 4.096 19 H 0.090 0.910 20 C 0.081 3.919 21 O -0.572 6.572 22 H 0.260 0.740 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -19.190 -2.119 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.316 5.316 13 C -0.021 4.021 14 H 0.062 0.938 15 C -0.154 4.154 16 C -0.160 4.160 17 C -0.148 4.148 18 C -0.115 4.115 19 H 0.108 0.892 20 C 0.003 3.997 21 O -0.377 6.377 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.993 -19.026 -0.815 19.278 hybrid contribution -0.249 1.020 -1.574 1.892 sum 2.744 -18.007 -2.389 18.371 Atomic orbital electron populations 1.69969 1.06071 1.26536 1.51098 1.25029 0.94842 0.99256 0.95390 0.86596 0.79892 0.83473 0.78058 1.20718 1.21237 1.19836 1.21263 0.93066 0.91071 1.50269 0.92672 1.19068 0.94025 0.91411 0.97079 1.21626 0.99166 0.93014 1.00705 1.22171 0.94131 0.90846 0.99810 1.60731 1.20203 1.01060 1.49584 1.22143 0.94987 0.88895 0.96078 0.93831 1.22187 0.99472 0.97276 0.96452 1.22339 1.00634 0.96360 0.96680 1.22405 1.01231 0.96436 0.94679 1.22204 1.01237 0.95667 0.92346 0.89156 1.22269 0.92450 0.90460 0.94495 1.86477 1.60352 1.60120 1.30765 0.93057 0.96870 0.96581 0.92541 0.93719 0.95921 0.91460 0.84536 0.92258 0.90212 0.91974 0.91486 0.91411 0.91841 0.93680 0.93755 0.77643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 11 C 0.06 1.04 5.51 -3.83 -0.02 1.01 16 12 N -0.68 -10.17 6.16 -105.44 -0.65 -10.82 16 13 C 0.09 1.13 2.82 -66.49 -0.19 0.94 16 14 H 0.04 0.56 7.53 -51.93 -0.39 0.17 16 15 C -0.12 -1.40 6.48 -25.61 -0.17 -1.57 16 16 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 17 C -0.11 -1.13 6.17 -24.74 -0.15 -1.28 16 18 C -0.10 -1.08 2.59 -88.85 -0.23 -1.31 16 19 H 0.09 1.12 7.98 -51.93 -0.41 0.71 16 20 C 0.08 0.81 6.33 37.16 0.24 1.05 16 21 O -0.57 -5.68 13.50 -35.23 -0.48 -6.16 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 28 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.34 4.76 8.36 -39.29 -0.33 4.43 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 36 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.38 2.05 9.12 45.56 0.42 2.46 16 LS Contribution 308.01 15.07 4.64 4.64 Total: -1.00 -31.28 308.01 -8.31 -39.59 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.15 Total: 0.76 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.39 Total: -18.33 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.09 Total: -37.42 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.48 Total: -6.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.28 -8.31 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231305620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.860 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds