Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47092 * 270.00348 * 3 2 1 5 5 H 1.48504 * 109.47272 * 29.99892 * 3 2 1 6 6 H 1.48498 * 109.47459 * 150.00309 * 3 2 1 7 7 C 1.37874 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47157 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47279 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00241 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.01664 * 34.94013 * 13 12 11 15 15 C 1.53877 * 110.03166 * 273.54623 * 13 12 11 16 16 C 1.54265 * 106.59605 * 240.66545 * 15 13 12 17 17 C 1.54887 * 104.20056 * 336.39127 * 16 15 13 18 18 C 1.54463 * 110.16261 * 156.19733 * 13 12 11 19 19 H 1.09003 * 110.40626 * 24.16025 * 18 13 12 20 20 C 1.53008 * 110.65944 * 261.46040 * 18 13 12 21 21 O 1.42900 * 109.47050 * 178.78530 * 20 18 13 22 22 H 0.97002 * 120.00206 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47473 * 60.00223 * 9 7 2 24 24 H 1.08999 * 109.47152 * 300.00029 * 9 7 2 25 25 H 1.09004 * 109.46989 * 59.99630 * 10 9 7 26 26 H 1.08999 * 109.46871 * 299.99905 * 10 9 7 27 27 H 1.09004 * 109.47455 * 59.99938 * 11 10 9 28 28 H 1.08999 * 109.47170 * 299.99744 * 11 10 9 29 29 H 1.00900 * 111.00136 * 303.96006 * 12 11 10 30 30 H 1.08995 * 110.02951 * 121.38500 * 15 13 12 31 31 H 1.08998 * 110.07557 * 359.97002 * 15 13 12 32 32 H 1.09004 * 110.48891 * 217.71100 * 16 15 13 33 33 H 1.09006 * 110.48556 * 95.06998 * 16 15 13 34 34 H 1.09002 * 110.75856 * 156.25785 * 17 16 15 35 35 H 1.09006 * 110.75640 * 279.44771 * 17 16 15 36 36 H 1.09001 * 109.46977 * 298.78378 * 20 18 13 37 37 H 1.08997 * 109.47352 * 58.78497 * 20 18 13 38 38 H 0.96701 * 113.99778 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 0.0001 12 7 2.4350 -6.1036 -0.0005 13 6 1.7347 -7.3949 0.0007 14 1 0.8182 -7.3229 -0.5849 15 6 1.4064 -7.8151 1.4441 16 6 2.1321 -9.1542 1.6891 17 6 2.3264 -9.7461 0.2710 18 6 2.6465 -8.4956 -0.5851 19 1 3.6950 -8.2177 -0.4774 20 6 2.3074 -8.7518 -2.0550 21 8 3.1831 -9.7524 -2.5784 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5570 0.8897 25 1 2.8721 -3.6042 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.8534 -5.0451 -0.8896 28 1 0.8541 -5.0445 0.8903 29 1 3.0694 -6.0366 -0.7823 30 1 0.3306 -7.9471 1.5590 31 1 1.7668 -7.0616 2.1443 32 1 1.5161 -9.8163 2.2977 33 1 3.0970 -8.9834 2.1666 34 1 3.1601 -10.4481 0.2563 35 1 1.4117 -10.2274 -0.0753 36 1 1.2756 -9.0938 -2.1355 37 1 2.4297 -7.8291 -2.6222 38 1 3.0249 -9.9662 -3.5081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231305620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = -105.674435 kcal Electronic energy + Delta-G solvation = -15681.106443 eV Core-core repulsion = 13134.954849 eV Total energy + Delta-G solvation = -2546.151594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09468 -37.50902 -36.58175 -34.99490 -32.72413 -31.03725 -28.93130 -27.15327 -25.15237 -23.96728 -22.15531 -21.11694 -20.61645 -18.47219 -18.26961 -17.22260 -16.55731 -16.21555 -16.15131 -15.63082 -15.33455 -14.68072 -14.38365 -14.27167 -13.87794 -13.42995 -13.18766 -12.83127 -12.65210 -12.51672 -12.23433 -12.10786 -11.93255 -11.80740 -11.58594 -11.50383 -11.38583 -11.36851 -11.06122 -10.86047 -10.55778 -9.38099 -8.20616 -6.31784 1.39927 1.41444 1.52901 2.40881 3.07590 3.12514 3.31361 3.64099 3.86873 3.97324 4.22346 4.32379 4.35427 4.42735 4.49128 4.51654 4.64008 4.70396 4.74308 4.85911 4.93659 4.96261 5.06872 5.12650 5.22634 5.22908 5.25256 5.36782 5.48940 5.52001 5.74209 5.85156 6.12138 6.27507 6.48461 6.85050 6.87897 7.37597 8.91384 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044848 B = 0.004225 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.174348 B = 6625.519657 C = 6929.279085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.074 3.926 12 N -0.685 5.685 13 C 0.088 3.912 14 H 0.045 0.955 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.104 4.104 18 C -0.093 4.093 19 H 0.078 0.922 20 C 0.084 3.916 21 O -0.586 6.586 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.060 0.940 29 H 0.342 0.658 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -19.861 -2.470 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.055 4.055 12 N -0.317 5.317 13 C -0.021 4.021 14 H 0.063 0.937 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.142 4.142 18 C -0.112 4.112 19 H 0.096 0.904 20 C 0.006 3.994 21 O -0.395 6.395 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.813 -19.723 -1.183 20.123 hybrid contribution -0.519 1.188 -1.477 1.965 sum 3.295 -18.534 -2.660 19.012 Atomic orbital electron populations 1.70098 1.07814 1.27793 1.51735 1.25990 0.95783 1.03395 0.94667 0.85435 0.78650 0.78344 0.78547 1.19659 1.20644 1.18809 1.21699 0.93532 0.92437 1.50525 0.92296 1.18973 0.94419 0.93120 0.94746 1.21380 0.98017 0.92994 1.00667 1.21855 0.93954 0.90205 0.99528 1.60660 1.19792 1.01233 1.50001 1.22212 0.95170 0.88061 0.96702 0.93729 1.22201 1.00115 0.97751 0.95565 1.22312 1.00488 0.95589 0.97114 1.22380 1.01727 0.95928 0.94181 1.22138 1.00031 0.95478 0.93552 0.90404 1.22196 0.93009 0.90648 0.93569 1.86424 1.60510 1.59931 1.32598 0.92745 0.99043 0.99063 0.93019 0.93124 0.95900 0.92132 0.83940 0.91564 0.92098 0.90395 0.91876 0.91213 0.90900 0.92569 0.93893 0.75416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.93 5.41 30.60 0.17 -3.77 16 11 C 0.07 2.59 5.51 86.30 0.48 3.06 16 12 N -0.69 -19.89 6.16 -487.49 -3.00 -22.90 16 13 C 0.09 2.13 2.82 45.71 0.13 2.26 16 14 H 0.04 1.09 7.53 -2.39 -0.02 1.07 16 15 C -0.12 -2.74 6.48 31.32 0.20 -2.54 16 16 C -0.12 -2.24 6.83 31.67 0.22 -2.02 16 17 C -0.10 -1.94 6.17 31.88 0.20 -1.74 16 18 C -0.09 -1.95 2.59 -9.65 -0.03 -1.98 16 19 H 0.08 1.84 7.98 -2.39 -0.02 1.82 16 20 C 0.08 1.52 6.33 71.98 0.46 1.98 16 21 O -0.59 -10.44 13.50 -148.98 -2.01 -12.45 16 22 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.02 0.80 8.07 -2.39 -0.02 0.78 16 28 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 29 H 0.34 9.34 8.36 -89.69 -0.75 8.59 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.65 7.92 -2.39 -0.02 1.63 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.23 8.02 -2.38 -0.02 1.21 16 36 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.40 3.45 9.12 -74.06 -0.68 2.78 16 Total: -1.00 -66.34 308.01 -0.45 -66.79 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -0.41 Total: 13.34 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 2.66 Total: -34.30 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.72 Total: -80.24 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -2.01 Total: -12.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.34 -0.45 -66.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231305620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.887 kcal (2) G-P(sol) polarization free energy of solvation -66.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds